2009-05-12 18:32:05,289 DEBUG root about to write control file parameters to --yearbase 2009 --pingtype bb --cfgbase MV0907 --cruisename MV0907 --instclass os --instname os75 --dbname a_mv --datatype uhdas --datadir /home/data/MV0907/raw/os75 --cfgpath /home/data/MV0907/proc/os75bb/config --ens_len 300 --ping_headcorr --hcorr_inst ashtech --use_topo4edit ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --acc_heading_cutoff 0.020000 2009-05-12 18:32:05,291 DEBUG quick_adcp progdir = /home/currents/programs 2009-05-12 18:32:05,291 DEBUG quick_adcp binos = lnx 2009-05-12 18:32:05,291 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2009-05-12 18:32:05,291 DEBUG quick_setup yearbase is 2009, proc_yearbase is 2009 2009-05-12 18:32:05,292 DEBUG quick_setup processing data logged with uhdas: 2009-05-12 18:32:05,292 DEBUG quick_setup datatype is uhdas 2009-05-12 18:32:05,292 DEBUG quick_setup pingtype is bb 2009-05-12 18:32:05,292 DEBUG quick_setup instclass is os 2009-05-12 18:32:05,292 DEBUG quick_setup no post-processing heading correction will be used 2009-05-12 18:32:05,292 DEBUG quick_setup transducer depth set in *_cfg.m file 2009-05-12 18:32:05,292 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'bb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'MV0907',... 'cfgpath' , '/home/data/MV0907/proc/os75bb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2009-05-12 18:32:05,292 DEBUG quick_setup ------- starting Matlab engine ------- 2009-05-12 18:32:05,292 DEBUG quick_setup ['/home/currents/programs/matlab'] 2009-05-12 18:32:05,294 DEBUG call_matlab starting to wait for initial prompt 2009-05-12 18:32:05,994 DEBUG call_matlab received initial prompt 2009-05-12 18:32:06,146 DEBUG quick_adcp cwd is /home/data/MV0907/proc/os75bb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-05-12 18:32:06,147 DEBUG quick_adcp original fix file is a_mv.gps 2009-05-12 18:32:06,147 DEBUG quick_adcp smoothed nav file is refsm.sm 2009-05-12 18:32:06,147 DEBUG quick_asect extracting matlab files for os75, bb pings 2009-05-12 18:32:06,299 DEBUG quick_subs found 65 files using wildcard expansion from "/home/data/MV0907/raw/os75/*.raw" 2009-05-12 18:32:06,299 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/MV0907/raw/os75/mv2009_126_39717.raw /home/data/MV0907/raw/os75/mv2009_126_43200.raw /home/data/MV0907/raw/os75/mv2009_126_50400.raw /home/data/MV0907/raw/os75/mv2009_126_57600.raw /home/data/MV0907/raw/os75/mv2009_126_64800.raw /home/data/MV0907/raw/os75/mv2009_126_72000.raw /home/data/MV0907/raw/os75/mv2009_126_79200.raw /home/data/MV0907/raw/os75/mv2009_127_00000.raw /home/data/MV0907/raw/os75/mv2009_127_07200.raw /home/data/MV0907/raw/os75/mv2009_127_14400.raw /home/data/MV0907/raw/os75/mv2009_127_21600.raw /home/data/MV0907/raw/os75/mv2009_127_28800.raw /home/data/MV0907/raw/os75/mv2009_127_36000.raw /home/data/MV0907/raw/os75/mv2009_127_43200.raw /home/data/MV0907/raw/os75/mv2009_127_50400.raw /home/data/MV0907/raw/os75/mv2009_127_57600.raw /home/data/MV0907/raw/os75/mv2009_127_64800.raw /home/data/MV0907/raw/os75/mv2009_127_72000.raw /home/data/MV0907/raw/os75/mv2009_127_79200.raw /home/data/MV0907/raw/os75/mv2009_128_00000.raw /home/data/MV0907/raw/os75/mv2009_128_07200.raw /home/data/MV0907/raw/os75/mv2009_128_14400.raw /home/data/MV0907/raw/os75/mv2009_128_21600.raw /home/data/MV0907/raw/os75/mv2009_128_28800.raw /home/data/MV0907/raw/os75/mv2009_128_36000.raw /home/data/MV0907/raw/os75/mv2009_128_43200.raw /home/data/MV0907/raw/os75/mv2009_128_50400.raw /home/data/MV0907/raw/os75/mv2009_128_57600.raw /home/data/MV0907/raw/os75/mv2009_128_64800.raw /home/data/MV0907/raw/os75/mv2009_128_72000.raw /home/data/MV0907/raw/os75/mv2009_128_79200.raw /home/data/MV0907/raw/os75/mv2009_129_00000.raw /home/data/MV0907/raw/os75/mv2009_129_07200.raw /home/data/MV0907/raw/os75/mv2009_129_14400.raw /home/data/MV0907/raw/os75/mv2009_129_21600.raw /home/data/MV0907/raw/os75/mv2009_129_28800.raw /home/data/MV0907/raw/os75/mv2009_129_36000.raw /home/data/MV0907/raw/os75/mv2009_129_43200.raw /home/data/MV0907/raw/os75/mv2009_129_50400.raw /home/data/MV0907/raw/os75/mv2009_129_57600.raw /home/data/MV0907/raw/os75/mv2009_129_64800.raw /home/data/MV0907/raw/os75/mv2009_129_72000.raw /home/data/MV0907/raw/os75/mv2009_129_79200.raw /home/data/MV0907/raw/os75/mv2009_130_00000.raw /home/data/MV0907/raw/os75/mv2009_130_07200.raw /home/data/MV0907/raw/os75/mv2009_130_14400.raw /home/data/MV0907/raw/os75/mv2009_130_21600.raw /home/data/MV0907/raw/os75/mv2009_130_28800.raw /home/data/MV0907/raw/os75/mv2009_130_36000.raw /home/data/MV0907/raw/os75/mv2009_130_43200.raw /home/data/MV0907/raw/os75/mv2009_130_50400.raw /home/data/MV0907/raw/os75/mv2009_130_57600.raw /home/data/MV0907/raw/os75/mv2009_130_64800.raw /home/data/MV0907/raw/os75/mv2009_130_72000.raw /home/data/MV0907/raw/os75/mv2009_130_79200.raw /home/data/MV0907/raw/os75/mv2009_131_00000.raw /home/data/MV0907/raw/os75/mv2009_131_07200.raw /home/data/MV0907/raw/os75/mv2009_131_14400.raw /home/data/MV0907/raw/os75/mv2009_131_21600.raw /home/data/MV0907/raw/os75/mv2009_131_28800.raw /home/data/MV0907/raw/os75/mv2009_131_36000.raw /home/data/MV0907/raw/os75/mv2009_131_43200.raw /home/data/MV0907/raw/os75/mv2009_131_50400.raw /home/data/MV0907/raw/os75/mv2009_131_57600.raw /home/data/MV0907/raw/os75/mv2009_131_64800.raw 2009-05-12 18:32:06,299 DEBUG quick_adcp LASTFILES invoked. using only 65 files from end of filelist 2009-05-12 18:32:06,299 DEBUG quick_adcp using delblks = 1 2009-05-12 18:32:06,299 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/MV0907/raw/os75/mv2009_126_39717.raw /home/data/MV0907/raw/os75/mv2009_126_43200.raw /home/data/MV0907/raw/os75/mv2009_126_50400.raw /home/data/MV0907/raw/os75/mv2009_126_57600.raw /home/data/MV0907/raw/os75/mv2009_126_64800.raw /home/data/MV0907/raw/os75/mv2009_126_72000.raw /home/data/MV0907/raw/os75/mv2009_126_79200.raw /home/data/MV0907/raw/os75/mv2009_127_00000.raw /home/data/MV0907/raw/os75/mv2009_127_07200.raw /home/data/MV0907/raw/os75/mv2009_127_14400.raw /home/data/MV0907/raw/os75/mv2009_127_21600.raw /home/data/MV0907/raw/os75/mv2009_127_28800.raw /home/data/MV0907/raw/os75/mv2009_127_36000.raw /home/data/MV0907/raw/os75/mv2009_127_43200.raw /home/data/MV0907/raw/os75/mv2009_127_50400.raw /home/data/MV0907/raw/os75/mv2009_127_57600.raw /home/data/MV0907/raw/os75/mv2009_127_64800.raw /home/data/MV0907/raw/os75/mv2009_127_72000.raw /home/data/MV0907/raw/os75/mv2009_127_79200.raw /home/data/MV0907/raw/os75/mv2009_128_00000.raw /home/data/MV0907/raw/os75/mv2009_128_07200.raw /home/data/MV0907/raw/os75/mv2009_128_14400.raw /home/data/MV0907/raw/os75/mv2009_128_21600.raw /home/data/MV0907/raw/os75/mv2009_128_28800.raw /home/data/MV0907/raw/os75/mv2009_128_36000.raw /home/data/MV0907/raw/os75/mv2009_128_43200.raw /home/data/MV0907/raw/os75/mv2009_128_50400.raw /home/data/MV0907/raw/os75/mv2009_128_57600.raw /home/data/MV0907/raw/os75/mv2009_128_64800.raw /home/data/MV0907/raw/os75/mv2009_128_72000.raw /home/data/MV0907/raw/os75/mv2009_128_79200.raw /home/data/MV0907/raw/os75/mv2009_129_00000.raw /home/data/MV0907/raw/os75/mv2009_129_07200.raw /home/data/MV0907/raw/os75/mv2009_129_14400.raw /home/data/MV0907/raw/os75/mv2009_129_21600.raw /home/data/MV0907/raw/os75/mv2009_129_28800.raw /home/data/MV0907/raw/os75/mv2009_129_36000.raw /home/data/MV0907/raw/os75/mv2009_129_43200.raw /home/data/MV0907/raw/os75/mv2009_129_50400.raw /home/data/MV0907/raw/os75/mv2009_129_57600.raw /home/data/MV0907/raw/os75/mv2009_129_64800.raw /home/data/MV0907/raw/os75/mv2009_129_72000.raw /home/data/MV0907/raw/os75/mv2009_129_79200.raw /home/data/MV0907/raw/os75/mv2009_130_00000.raw /home/data/MV0907/raw/os75/mv2009_130_07200.raw /home/data/MV0907/raw/os75/mv2009_130_14400.raw /home/data/MV0907/raw/os75/mv2009_130_21600.raw /home/data/MV0907/raw/os75/mv2009_130_28800.raw /home/data/MV0907/raw/os75/mv2009_130_36000.raw /home/data/MV0907/raw/os75/mv2009_130_43200.raw /home/data/MV0907/raw/os75/mv2009_130_50400.raw /home/data/MV0907/raw/os75/mv2009_130_57600.raw /home/data/MV0907/raw/os75/mv2009_130_64800.raw /home/data/MV0907/raw/os75/mv2009_130_72000.raw /home/data/MV0907/raw/os75/mv2009_130_79200.raw /home/data/MV0907/raw/os75/mv2009_131_00000.raw /home/data/MV0907/raw/os75/mv2009_131_07200.raw /home/data/MV0907/raw/os75/mv2009_131_14400.raw /home/data/MV0907/raw/os75/mv2009_131_21600.raw /home/data/MV0907/raw/os75/mv2009_131_28800.raw /home/data/MV0907/raw/os75/mv2009_131_36000.raw /home/data/MV0907/raw/os75/mv2009_131_43200.raw /home/data/MV0907/raw/os75/mv2009_131_50400.raw /home/data/MV0907/raw/os75/mv2009_131_57600.raw /home/data/MV0907/raw/os75/mv2009_131_64800.raw 2009-05-12 18:32:06,300 DEBUG quick_adcp Tue May 12 18:32:06 2009 running quick_adcp.py as follows: --cntfile /home/data/MV0907/proc/os75bb/os75bb_qpy.cnt ----- adcpsect variables ------ afilebase a_mv cbasename contour dbname a_mv dbpath ../adcpdb deeper_boundaries [75, 125, 175, 250, 300, 350, 400, 450, 500, 550, 600, 650, 700] firstdepth 22 gridnum 80 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2009 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.02 adjust_time 1 afilebase a_mv allow_reload True auto True bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase MV0907 cfgpath /home/data/MV0907/proc/os75bb/config cntfile /home/data/MV0907/proc/os75bb/os75bb_qpy.cnt commands None cruisename MV0907 data_def vmadcp.def datadir /home/data/MV0907/raw/os75 datafile_glob *.raw datatype uhdas dbname a_mv dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False filelist ['/home/data/MV0907/raw/os75/mv2009_126_39717.raw', '/home/data/MV0907/raw/os75/mv2009_126_43200.raw', '/home/data/MV0907/raw/os75/mv2009_126_50400.raw', '/home/data/MV0907/raw/os75/mv2009_126_57600.raw', '/home/data/MV0907/raw/os75/mv2009_126_64800.raw', '/home/data/MV0907/raw/os75/mv2009_126_72000.raw', '/home/data/MV0907/raw/os75/mv2009_126_79200.raw', '/home/data/MV0907/raw/os75/mv2009_127_00000.raw', '/home/data/MV0907/raw/os75/mv2009_127_07200.raw', '/home/data/MV0907/raw/os75/mv2009_127_14400.raw', '/home/data/MV0907/raw/os75/mv2009_127_21600.raw', '/home/data/MV0907/raw/os75/mv2009_127_28800.raw', '/home/data/MV0907/raw/os75/mv2009_127_36000.raw', '/home/data/MV0907/raw/os75/mv2009_127_43200.raw', '/home/data/MV0907/raw/os75/mv2009_127_50400.raw', '/home/data/MV0907/raw/os75/mv2009_127_57600.raw', '/home/data/MV0907/raw/os75/mv2009_127_64800.raw', '/home/data/MV0907/raw/os75/mv2009_127_72000.raw', '/home/data/MV0907/raw/os75/mv2009_127_79200.raw', '/home/data/MV0907/raw/os75/mv2009_128_00000.raw', '/home/data/MV0907/raw/os75/mv2009_128_07200.raw', '/home/data/MV0907/raw/os75/mv2009_128_14400.raw', '/home/data/MV0907/raw/os75/mv2009_128_21600.raw', '/home/data/MV0907/raw/os75/mv2009_128_28800.raw', '/home/data/MV0907/raw/os75/mv2009_128_36000.raw', '/home/data/MV0907/raw/os75/mv2009_128_43200.raw', '/home/data/MV0907/raw/os75/mv2009_128_50400.raw', '/home/data/MV0907/raw/os75/mv2009_128_57600.raw', '/home/data/MV0907/raw/os75/mv2009_128_64800.raw', '/home/data/MV0907/raw/os75/mv2009_128_72000.raw', '/home/data/MV0907/raw/os75/mv2009_128_79200.raw', '/home/data/MV0907/raw/os75/mv2009_129_00000.raw', '/home/data/MV0907/raw/os75/mv2009_129_07200.raw', '/home/data/MV0907/raw/os75/mv2009_129_14400.raw', '/home/data/MV0907/raw/os75/mv2009_129_21600.raw', '/home/data/MV0907/raw/os75/mv2009_129_28800.raw', '/home/data/MV0907/raw/os75/mv2009_129_36000.raw', '/home/data/MV0907/raw/os75/mv2009_129_43200.raw', '/home/data/MV0907/raw/os75/mv2009_129_50400.raw', '/home/data/MV0907/raw/os75/mv2009_129_57600.raw', '/home/data/MV0907/raw/os75/mv2009_129_64800.raw', '/home/data/MV0907/raw/os75/mv2009_129_72000.raw', '/home/data/MV0907/raw/os75/mv2009_129_79200.raw', '/home/data/MV0907/raw/os75/mv2009_130_00000.raw', '/home/data/MV0907/raw/os75/mv2009_130_07200.raw', '/home/data/MV0907/raw/os75/mv2009_130_14400.raw', '/home/data/MV0907/raw/os75/mv2009_130_21600.raw', '/home/data/MV0907/raw/os75/mv2009_130_28800.raw', '/home/data/MV0907/raw/os75/mv2009_130_36000.raw', '/home/data/MV0907/raw/os75/mv2009_130_43200.raw', '/home/data/MV0907/raw/os75/mv2009_130_50400.raw', '/home/data/MV0907/raw/os75/mv2009_130_57600.raw', '/home/data/MV0907/raw/os75/mv2009_130_64800.raw', '/home/data/MV0907/raw/os75/mv2009_130_72000.raw', '/home/data/MV0907/raw/os75/mv2009_130_79200.raw', '/home/data/MV0907/raw/os75/mv2009_131_00000.raw', '/home/data/MV0907/raw/os75/mv2009_131_07200.raw', '/home/data/MV0907/raw/os75/mv2009_131_14400.raw', '/home/data/MV0907/raw/os75/mv2009_131_21600.raw', '/home/data/MV0907/raw/os75/mv2009_131_28800.raw', '/home/data/MV0907/raw/os75/mv2009_131_36000.raw', '/home/data/MV0907/raw/os75/mv2009_131_43200.raw', '/home/data/MV0907/raw/os75/mv2009_131_50400.raw', '/home/data/MV0907/raw/os75/mv2009_131_57600.raw', '/home/data/MV0907/raw/os75/mv2009_131_64800.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 22 fixfile a_mv.gps hcorr_inst ashtech head_func None help False hidedisplay True howto_lta False howto_ping False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'bb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'MV0907',... 'cfgpath' , '/home/data/MV0907/proc/os75bb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_mv.gps overview False pgmin 50 ping_headcorr True pingtype bb post_headcorr False proc_yearbase 2009 procdir os75bb progdir /home/currents/programs quiet True rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/MV0907/raw/os75/mv2009_126_39717.raw', '/home/data/MV0907/raw/os75/mv2009_126_43200.raw', '/home/data/MV0907/raw/os75/mv2009_126_50400.raw', '/home/data/MV0907/raw/os75/mv2009_126_57600.raw', '/home/data/MV0907/raw/os75/mv2009_126_64800.raw', '/home/data/MV0907/raw/os75/mv2009_126_72000.raw', '/home/data/MV0907/raw/os75/mv2009_126_79200.raw', '/home/data/MV0907/raw/os75/mv2009_127_00000.raw', '/home/data/MV0907/raw/os75/mv2009_127_07200.raw', '/home/data/MV0907/raw/os75/mv2009_127_14400.raw', '/home/data/MV0907/raw/os75/mv2009_127_21600.raw', '/home/data/MV0907/raw/os75/mv2009_127_28800.raw', '/home/data/MV0907/raw/os75/mv2009_127_36000.raw', '/home/data/MV0907/raw/os75/mv2009_127_43200.raw', '/home/data/MV0907/raw/os75/mv2009_127_50400.raw', '/home/data/MV0907/raw/os75/mv2009_127_57600.raw', '/home/data/MV0907/raw/os75/mv2009_127_64800.raw', '/home/data/MV0907/raw/os75/mv2009_127_72000.raw', '/home/data/MV0907/raw/os75/mv2009_127_79200.raw', '/home/data/MV0907/raw/os75/mv2009_128_00000.raw', '/home/data/MV0907/raw/os75/mv2009_128_07200.raw', '/home/data/MV0907/raw/os75/mv2009_128_14400.raw', '/home/data/MV0907/raw/os75/mv2009_128_21600.raw', '/home/data/MV0907/raw/os75/mv2009_128_28800.raw', '/home/data/MV0907/raw/os75/mv2009_128_36000.raw', '/home/data/MV0907/raw/os75/mv2009_128_43200.raw', '/home/data/MV0907/raw/os75/mv2009_128_50400.raw', '/home/data/MV0907/raw/os75/mv2009_128_57600.raw', '/home/data/MV0907/raw/os75/mv2009_128_64800.raw', '/home/data/MV0907/raw/os75/mv2009_128_72000.raw', '/home/data/MV0907/raw/os75/mv2009_128_79200.raw', '/home/data/MV0907/raw/os75/mv2009_129_00000.raw', '/home/data/MV0907/raw/os75/mv2009_129_07200.raw', '/home/data/MV0907/raw/os75/mv2009_129_14400.raw', '/home/data/MV0907/raw/os75/mv2009_129_21600.raw', '/home/data/MV0907/raw/os75/mv2009_129_28800.raw', '/home/data/MV0907/raw/os75/mv2009_129_36000.raw', '/home/data/MV0907/raw/os75/mv2009_129_43200.raw', '/home/data/MV0907/raw/os75/mv2009_129_50400.raw', '/home/data/MV0907/raw/os75/mv2009_129_57600.raw', '/home/data/MV0907/raw/os75/mv2009_129_64800.raw', '/home/data/MV0907/raw/os75/mv2009_129_72000.raw', '/home/data/MV0907/raw/os75/mv2009_129_79200.raw', '/home/data/MV0907/raw/os75/mv2009_130_00000.raw', '/home/data/MV0907/raw/os75/mv2009_130_07200.raw', '/home/data/MV0907/raw/os75/mv2009_130_14400.raw', '/home/data/MV0907/raw/os75/mv2009_130_21600.raw', '/home/data/MV0907/raw/os75/mv2009_130_28800.raw', '/home/data/MV0907/raw/os75/mv2009_130_36000.raw', '/home/data/MV0907/raw/os75/mv2009_130_43200.raw', '/home/data/MV0907/raw/os75/mv2009_130_50400.raw', '/home/data/MV0907/raw/os75/mv2009_130_57600.raw', '/home/data/MV0907/raw/os75/mv2009_130_64800.raw', '/home/data/MV0907/raw/os75/mv2009_130_72000.raw', '/home/data/MV0907/raw/os75/mv2009_130_79200.raw', '/home/data/MV0907/raw/os75/mv2009_131_00000.raw', '/home/data/MV0907/raw/os75/mv2009_131_07200.raw', '/home/data/MV0907/raw/os75/mv2009_131_14400.raw', '/home/data/MV0907/raw/os75/mv2009_131_21600.raw', '/home/data/MV0907/raw/os75/mv2009_131_28800.raw', '/home/data/MV0907/raw/os75/mv2009_131_36000.raw', '/home/data/MV0907/raw/os75/mv2009_131_43200.raw', '/home/data/MV0907/raw/os75/mv2009_131_50400.raw', '/home/data/MV0907/raw/os75/mv2009_131_57600.raw', '/home/data/MV0907/raw/os75/mv2009_131_64800.raw'] setup_info False skip_avg True smfile refsm.sm steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_matplotlib False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2009 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-05-12 18:32:06,301 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2009-05-12 18:32:06,301 DEBUG quick_run scanning files for time ranges... 2009-05-12 18:32:06,301 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb/scan 2009-05-12 18:32:06,301 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/scan 2009-05-12 18:32:06,301 DEBUG quick_setup running python command "method" 2009-05-12 18:32:06,301 DEBUG call_matlab --> clear all 2009-05-12 18:32:06,305 DEBUG call_matlab <-- >> 2009-05-12 18:32:06,305 DEBUG call_matlab --> close all 2009-05-12 18:32:06,344 DEBUG call_matlab <-- >> 2009-05-12 18:32:06,344 DEBUG call_matlab --> cd /home/data/MV0907/proc/os75bb/scan 2009-05-12 18:32:06,346 DEBUG call_matlab <-- >> 2009-05-12 18:32:06,346 DEBUG call_matlab --> scan_tmp 2009-05-12 18:32:06,879 DEBUG call_matlab <-- getting config files from "/home/data/MV0907/proc/os75bb/config" running "MV0907_cfg.m" running "MV0907_proc.m" writing scan info to a_mv.scn >> 2009-05-12 18:32:06,879 DEBUG quick_run writing time range from a_mv.scn to a_mv.tr 2009-05-12 18:32:06,879 DEBUG quick_run getting scan time range 2009-05-12 18:32:06,880 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:06,880 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/scan 2009-05-12 18:32:06,880 DEBUG quick_setup running python command "method" 2009-05-12 18:32:06,880 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:06,881 DEBUG quick_subs extracting time range 2009-05-12 18:32:06,881 DEBUG quick_subs start_end_time 2009/05/07 11:02:03 to 2009/05/12 18:31:59 2009-05-12 18:32:06,882 DEBUG quick_subs dd0: 126.459757 dd1: 131.772211 2009-05-12 18:32:06,882 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/MV0907/proc/os75bb 2009-05-12 18:32:06,882 DEBUG quick_adcp looking for database with adcpdb/a_mv*.blk 2009-05-12 18:32:06,882 DEBUG quick_adcp database found: listing blocks 2009-05-12 18:32:06,883 DEBUG quick_subs removing a_mvdir.blk 2009-05-12 18:32:06,883 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:32:06,883 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:32:06,883 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:32:06,892 DEBUG quick_subs database passes. 2009-05-12 18:32:06,892 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:06,892 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:06,892 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/adcpdb 2009-05-12 18:32:06,892 DEBUG quick_setup running python command "method" 2009-05-12 18:32:06,892 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:06,893 DEBUG quick_subs extracting time range 2009-05-12 18:32:06,893 DEBUG quick_subs start_end_time 2009/05/07 11:07:10 to 2009/05/12 18:01:27 2009-05-12 18:32:06,893 DEBUG quick_subs dd0: 126.463310 dd1: 131.751007 2009-05-12 18:32:06,893 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:06,893 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:06,893 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/adcpdb 2009-05-12 18:32:06,894 DEBUG quick_setup running python command "method" 2009-05-12 18:32:06,894 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:06,894 DEBUG quick_subs extracting time range 2009-05-12 18:32:06,894 DEBUG quick_subs start_end_time 2009/05/07 11:07:10 to 2009/05/12 18:01:27 2009-05-12 18:32:06,894 DEBUG quick_subs dd0: 126.463310 dd1: 131.751007 2009-05-12 18:32:06,894 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2009-05-12 18:32:06,895 DEBUG quick_adcp origdb_time_range is 2009/05/07 11:07:10 to 2009/05/12 18:01:27 2009-05-12 18:32:06,895 DEBUG quick_adcp (126.463310 to 131.751007) 2009-05-12 18:32:06,895 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2009-05-12 18:32:06,895 DEBUG quick_subs getting current (remaining after deletion) database times 2009-05-12 18:32:06,895 DEBUG quick_subs ['adcpdb/a_mv001.blk', 'adcpdb/a_mv006.blk', 'adcpdb/a_mv010.blk', 'adcpdb/a_mv005.blk', 'adcpdb/a_mv009.blk', 'adcpdb/a_mv011.blk', 'adcpdb/a_mvdir.blk', 'adcpdb/a_mv002.blk', 'adcpdb/a_mv004.blk', 'adcpdb/a_mv008.blk', 'adcpdb/a_mv007.blk', 'adcpdb/a_mv003.blk'] 2009-05-12 18:32:06,895 DEBUG quick_subs length is 12 2009-05-12 18:32:06,896 DEBUG quick_subs removing a_mvdir.blk 2009-05-12 18:32:06,896 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:32:06,896 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:32:06,896 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:32:06,904 DEBUG quick_subs database passes. 2009-05-12 18:32:06,904 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:06,904 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:06,904 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/adcpdb 2009-05-12 18:32:06,905 DEBUG quick_setup running python command "method" 2009-05-12 18:32:06,905 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:06,905 DEBUG quick_subs extracting time range 2009-05-12 18:32:06,905 DEBUG quick_subs start_end_time 2009/05/07 11:07:10 to 2009/05/12 18:01:27 2009-05-12 18:32:06,905 DEBUG quick_subs dd0: 126.463310 dd1: 131.751007 2009-05-12 18:32:06,905 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:06,906 DEBUG quick_subs reading time range 2009-05-12 18:32:06,906 DEBUG quick_subs start_end_time 2009/05/07 11:07:10 to 2009/05/12 18:01:27 2009-05-12 18:32:06,906 DEBUG quick_subs dd0: 126.463310 dd1: 131.751007 2009-05-12 18:32:06,906 INFO quick_subs Tue May 12 18:32:06 2009 2009-05-12 18:32:06,906 INFO quick_subs checking database time range by listblk 2009-05-12 18:32:06,906 DEBUG quick_subs removing a_mvdir.blk 2009-05-12 18:32:06,907 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:32:06,907 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:32:06,907 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:32:06,915 DEBUG quick_subs database passes. 2009-05-12 18:32:06,915 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:06,915 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:06,915 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/adcpdb 2009-05-12 18:32:06,916 DEBUG quick_setup running python command "method" 2009-05-12 18:32:06,916 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:06,916 DEBUG quick_subs extracting time range 2009-05-12 18:32:06,916 DEBUG quick_subs start_end_time 2009/05/07 11:07:10 to 2009/05/12 18:01:27 2009-05-12 18:32:06,916 DEBUG quick_subs dd0: 126.463310 dd1: 131.751007 2009-05-12 18:32:06,918 INFO quick_subs found line /* 0 n= 146 a_mv001.blk */ 2009/05/07 11:07:10 to 2009/05/07 23:20:59 2009-05-12 18:32:06,918 INFO quick_subs found line /* 1 n= 146 a_mv002.blk */ 2009/05/07 23:26:03 to 2009/05/08 11:39:55 2009-05-12 18:32:06,918 INFO quick_subs found line /* 2 n= 146 a_mv003.blk */ 2009/05/08 11:44:58 to 2009/05/08 23:58:36 2009-05-12 18:32:06,918 INFO quick_subs found line /* 3 n= 146 a_mv004.blk */ 2009/05/09 00:03:40 to 2009/05/09 12:18:41 2009-05-12 18:32:06,918 INFO quick_subs found line /* 4 n= 146 a_mv005.blk */ 2009/05/09 12:23:45 to 2009/05/10 00:38:39 2009-05-12 18:32:06,918 INFO quick_subs found line /* 5 n= 146 a_mv006.blk */ 2009/05/10 00:43:44 to 2009/05/10 12:58:26 2009-05-12 18:32:06,919 INFO quick_subs found line /* 6 n= 146 a_mv007.blk */ 2009/05/10 13:03:29 to 2009/05/11 01:16:52 2009-05-12 18:32:06,919 INFO quick_subs found line /* 7 n= 146 a_mv008.blk */ 2009/05/11 01:21:55 to 2009/05/11 13:35:40 2009-05-12 18:32:06,919 INFO quick_subs found line /* 8 n= 146 a_mv009.blk */ 2009/05/11 13:40:43 to 2009/05/12 01:54:53 2009-05-12 18:32:06,919 INFO quick_subs found line /* 9 n= 146 a_mv010.blk */ 2009/05/12 01:59:53 to 2009/05/12 14:13:46 2009-05-12 18:32:06,919 INFO quick_subs found line /* 10 n= 45 a_mv011.blk */ 2009/05/12 14:18:48 to 2009/05/12 18:01:27 2009-05-12 18:32:06,919 INFO quick_subs scan data start at 126.4597569 2009-05-12 18:32:06,919 INFO quick_subs scan time range: 2009/05/07 11:02:03 to 2009/05/12 18:31:59 2009-05-12 18:32:06,919 INFO quick_subs codasdb ends at 131.7510069 (2009/05/12 18:01:27) 2009-05-12 18:32:06,920 DEBUG quick_subs ... changed dirs, in /home/data/MV0907/proc/os75bb/adcpdb 2009-05-12 18:32:06,920 DEBUG quick_subs deleting these files: ['a_mv011.blk'] 2009-05-12 18:32:06,920 DEBUG quick_subs getting current (remaining after deletion) database times 2009-05-12 18:32:06,920 DEBUG quick_subs ['adcpdb/a_mv001.blk', 'adcpdb/a_mv006.blk', 'adcpdb/a_mv010.blk', 'adcpdb/a_mv005.blk', 'adcpdb/a_mv009.blk', 'adcpdb/a_mv002.blk', 'adcpdb/a_mv004.blk', 'adcpdb/a_mv008.blk', 'adcpdb/a_mv007.blk', 'adcpdb/a_mv003.blk'] 2009-05-12 18:32:06,921 DEBUG quick_subs length is 10 2009-05-12 18:32:06,921 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:32:06,921 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:32:06,921 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:32:06,929 DEBUG quick_subs database passes. 2009-05-12 18:32:06,929 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:06,929 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:06,930 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/adcpdb 2009-05-12 18:32:06,930 DEBUG quick_setup running python command "method" 2009-05-12 18:32:06,930 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:06,930 DEBUG quick_subs extracting time range 2009-05-12 18:32:06,930 DEBUG quick_subs start_end_time 2009/05/07 11:07:10 to 2009/05/12 14:13:46 2009-05-12 18:32:06,931 DEBUG quick_subs dd0: 126.463310 dd1: 131.592894 2009-05-12 18:32:06,931 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:06,931 DEBUG quick_subs reading time range 2009-05-12 18:32:06,931 DEBUG quick_subs start_end_time 2009/05/07 11:07:10 to 2009/05/12 14:13:46 2009-05-12 18:32:06,931 DEBUG quick_subs dd0: 126.463310 dd1: 131.592894 2009-05-12 18:32:06,931 DEBUG quick_subs codas database currently goes from 2009/05/07 11:07:10 to 2009/05/12 14:13:46 2009-05-12 18:32:06,931 DEBUG quick_subs (126.463310 to 131.592894) 2009-05-12 18:32:06,932 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009found existing adcpdb blocks: %s 010 2009-05-12 18:32:06,933 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 011 2009-05-12 18:32:06,933 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010'] 2009-05-12 18:32:06,933 DEBUG quick_subs checked: unloaded blkstrs: ['011'] 2009-05-12 18:32:06,933 DEBUG quick_subs first unloaded file is load/ens_blk011.cmd 2009-05-12 18:32:06,933 DEBUG quick_subs data goes from 2009/05/12 14:18:48 to 2009/05/12 18:31:59 2009-05-12 18:32:06,933 DEBUG quick_subs (131.596389 to 131.772211) 2009-05-12 18:32:06,934 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/MV0907/raw/os75/mv2009_126_39717.raw /home/data/MV0907/raw/os75/mv2009_126_43200.raw /home/data/MV0907/raw/os75/mv2009_126_50400.raw /home/data/MV0907/raw/os75/mv2009_126_57600.raw /home/data/MV0907/raw/os75/mv2009_126_64800.raw /home/data/MV0907/raw/os75/mv2009_126_72000.raw /home/data/MV0907/raw/os75/mv2009_126_79200.raw /home/data/MV0907/raw/os75/mv2009_127_00000.raw /home/data/MV0907/raw/os75/mv2009_127_07200.raw /home/data/MV0907/raw/os75/mv2009_127_14400.raw /home/data/MV0907/raw/os75/mv2009_127_21600.raw /home/data/MV0907/raw/os75/mv2009_127_28800.raw /home/data/MV0907/raw/os75/mv2009_127_36000.raw /home/data/MV0907/raw/os75/mv2009_127_43200.raw /home/data/MV0907/raw/os75/mv2009_127_50400.raw /home/data/MV0907/raw/os75/mv2009_127_57600.raw /home/data/MV0907/raw/os75/mv2009_127_64800.raw /home/data/MV0907/raw/os75/mv2009_127_72000.raw /home/data/MV0907/raw/os75/mv2009_127_79200.raw /home/data/MV0907/raw/os75/mv2009_128_00000.raw /home/data/MV0907/raw/os75/mv2009_128_07200.raw /home/data/MV0907/raw/os75/mv2009_128_14400.raw /home/data/MV0907/raw/os75/mv2009_128_21600.raw /home/data/MV0907/raw/os75/mv2009_128_28800.raw /home/data/MV0907/raw/os75/mv2009_128_36000.raw /home/data/MV0907/raw/os75/mv2009_128_43200.raw /home/data/MV0907/raw/os75/mv2009_128_50400.raw /home/data/MV0907/raw/os75/mv2009_128_57600.raw /home/data/MV0907/raw/os75/mv2009_128_64800.raw /home/data/MV0907/raw/os75/mv2009_128_72000.raw /home/data/MV0907/raw/os75/mv2009_128_79200.raw /home/data/MV0907/raw/os75/mv2009_129_00000.raw /home/data/MV0907/raw/os75/mv2009_129_07200.raw /home/data/MV0907/raw/os75/mv2009_129_14400.raw /home/data/MV0907/raw/os75/mv2009_129_21600.raw /home/data/MV0907/raw/os75/mv2009_129_28800.raw /home/data/MV0907/raw/os75/mv2009_129_36000.raw /home/data/MV0907/raw/os75/mv2009_129_43200.raw /home/data/MV0907/raw/os75/mv2009_129_50400.raw /home/data/MV0907/raw/os75/mv2009_129_57600.raw /home/data/MV0907/raw/os75/mv2009_129_64800.raw /home/data/MV0907/raw/os75/mv2009_129_72000.raw /home/data/MV0907/raw/os75/mv2009_129_79200.raw /home/data/MV0907/raw/os75/mv2009_130_00000.raw /home/data/MV0907/raw/os75/mv2009_130_07200.raw /home/data/MV0907/raw/os75/mv2009_130_14400.raw /home/data/MV0907/raw/os75/mv2009_130_21600.raw /home/data/MV0907/raw/os75/mv2009_130_28800.raw /home/data/MV0907/raw/os75/mv2009_130_36000.raw /home/data/MV0907/raw/os75/mv2009_130_43200.raw /home/data/MV0907/raw/os75/mv2009_130_50400.raw /home/data/MV0907/raw/os75/mv2009_130_57600.raw /home/data/MV0907/raw/os75/mv2009_130_64800.raw /home/data/MV0907/raw/os75/mv2009_130_72000.raw /home/data/MV0907/raw/os75/mv2009_130_79200.raw /home/data/MV0907/raw/os75/mv2009_131_00000.raw /home/data/MV0907/raw/os75/mv2009_131_07200.raw /home/data/MV0907/raw/os75/mv2009_131_14400.raw /home/data/MV0907/raw/os75/mv2009_131_21600.raw /home/data/MV0907/raw/os75/mv2009_131_28800.raw /home/data/MV0907/raw/os75/mv2009_131_36000.raw /home/data/MV0907/raw/os75/mv2009_131_43200.raw /home/data/MV0907/raw/os75/mv2009_131_50400.raw /home/data/MV0907/raw/os75/mv2009_131_57600.raw /home/data/MV0907/raw/os75/mv2009_131_64800.raw 2009-05-12 18:32:06,934 INFO quick_run Tue May 12 18:32:06 2009 2009-05-12 18:32:06,934 INFO quick_run about to load uhdas files 2009-05-12 18:32:06,934 INFO quick_run /home/data/MV0907/raw/os75/mv2009_126_39717.raw /home/data/MV0907/raw/os75/mv2009_126_43200.raw /home/data/MV0907/raw/os75/mv2009_126_50400.raw /home/data/MV0907/raw/os75/mv2009_126_57600.raw /home/data/MV0907/raw/os75/mv2009_126_64800.raw /home/data/MV0907/raw/os75/mv2009_126_72000.raw /home/data/MV0907/raw/os75/mv2009_126_79200.raw /home/data/MV0907/raw/os75/mv2009_127_00000.raw /home/data/MV0907/raw/os75/mv2009_127_07200.raw /home/data/MV0907/raw/os75/mv2009_127_14400.raw /home/data/MV0907/raw/os75/mv2009_127_21600.raw /home/data/MV0907/raw/os75/mv2009_127_28800.raw /home/data/MV0907/raw/os75/mv2009_127_36000.raw /home/data/MV0907/raw/os75/mv2009_127_43200.raw /home/data/MV0907/raw/os75/mv2009_127_50400.raw /home/data/MV0907/raw/os75/mv2009_127_57600.raw /home/data/MV0907/raw/os75/mv2009_127_64800.raw /home/data/MV0907/raw/os75/mv2009_127_72000.raw /home/data/MV0907/raw/os75/mv2009_127_79200.raw /home/data/MV0907/raw/os75/mv2009_128_00000.raw /home/data/MV0907/raw/os75/mv2009_128_07200.raw /home/data/MV0907/raw/os75/mv2009_128_14400.raw /home/data/MV0907/raw/os75/mv2009_128_21600.raw /home/data/MV0907/raw/os75/mv2009_128_28800.raw /home/data/MV0907/raw/os75/mv2009_128_36000.raw /home/data/MV0907/raw/os75/mv2009_128_43200.raw /home/data/MV0907/raw/os75/mv2009_128_50400.raw /home/data/MV0907/raw/os75/mv2009_128_57600.raw /home/data/MV0907/raw/os75/mv2009_128_64800.raw /home/data/MV0907/raw/os75/mv2009_128_72000.raw /home/data/MV0907/raw/os75/mv2009_128_79200.raw /home/data/MV0907/raw/os75/mv2009_129_00000.raw /home/data/MV0907/raw/os75/mv2009_129_07200.raw /home/data/MV0907/raw/os75/mv2009_129_14400.raw /home/data/MV0907/raw/os75/mv2009_129_21600.raw /home/data/MV0907/raw/os75/mv2009_129_28800.raw /home/data/MV0907/raw/os75/mv2009_129_36000.raw /home/data/MV0907/raw/os75/mv2009_129_43200.raw /home/data/MV0907/raw/os75/mv2009_129_50400.raw /home/data/MV0907/raw/os75/mv2009_129_57600.raw /home/data/MV0907/raw/os75/mv2009_129_64800.raw /home/data/MV0907/raw/os75/mv2009_129_72000.raw /home/data/MV0907/raw/os75/mv2009_129_79200.raw /home/data/MV0907/raw/os75/mv2009_130_00000.raw /home/data/MV0907/raw/os75/mv2009_130_07200.raw /home/data/MV0907/raw/os75/mv2009_130_14400.raw /home/data/MV0907/raw/os75/mv2009_130_21600.raw /home/data/MV0907/raw/os75/mv2009_130_28800.raw /home/data/MV0907/raw/os75/mv2009_130_36000.raw /home/data/MV0907/raw/os75/mv2009_130_43200.raw /home/data/MV0907/raw/os75/mv2009_130_50400.raw /home/data/MV0907/raw/os75/mv2009_130_57600.raw /home/data/MV0907/raw/os75/mv2009_130_64800.raw /home/data/MV0907/raw/os75/mv2009_130_72000.raw /home/data/MV0907/raw/os75/mv2009_130_79200.raw /home/data/MV0907/raw/os75/mv2009_131_00000.raw /home/data/MV0907/raw/os75/mv2009_131_07200.raw /home/data/MV0907/raw/os75/mv2009_131_14400.raw /home/data/MV0907/raw/os75/mv2009_131_21600.raw /home/data/MV0907/raw/os75/mv2009_131_28800.raw /home/data/MV0907/raw/os75/mv2009_131_36000.raw /home/data/MV0907/raw/os75/mv2009_131_43200.raw /home/data/MV0907/raw/os75/mv2009_131_50400.raw /home/data/MV0907/raw/os75/mv2009_131_57600.raw /home/data/MV0907/raw/os75/mv2009_131_64800.raw 2009-05-12 18:32:06,934 DEBUG quick_setup load/ldcodas.tmp exists 2009-05-12 18:32:06,934 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:06,934 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/load 2009-05-12 18:32:06,934 DEBUG quick_setup running python command "method" 2009-05-12 18:32:06,934 DEBUG quick_subs in /home/data/MV0907/proc/os75bb/load 2009-05-12 18:32:06,935 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010'] 2009-05-12 18:32:06,935 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011'] 2009-05-12 18:32:06,935 DEBUG quick_subs starttime is 2009/05/12 14:18:48 2009-05-12 18:32:06,936 DEBUG quick_subs RESETTING thisload_time_range 2009-05-12 18:32:06,936 DEBUG quick_subs time range of data to be loaded: 2009/05/12 14:18:48 to 2009/05/12 18:31:59 2009-05-12 18:32:06,936 DEBUG quick_subs data startdd 131.596389 data enddd 131.772211 2009-05-12 18:32:06,936 DEBUG quick_subs about to load from these cmd files ['ens_blk011.cmd'] 2009-05-12 18:32:06,936 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_mv DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2009 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk011.cmd 2009-05-12 18:32:06,936 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2009-05-12 18:32:06,951 DEBUG quick_subs removing a_mvdir.blk 2009-05-12 18:32:06,952 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:32:06,952 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:32:06,952 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:32:06,960 DEBUG quick_subs database passes. 2009-05-12 18:32:06,960 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:06,960 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:06,960 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/adcpdb 2009-05-12 18:32:06,961 DEBUG quick_setup running python command "method" 2009-05-12 18:32:06,961 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:06,961 DEBUG quick_subs extracting time range 2009-05-12 18:32:06,961 DEBUG quick_subs start_end_time 2009/05/07 11:07:10 to 2009/05/12 18:31:50 2009-05-12 18:32:06,961 DEBUG quick_subs dd0: 126.463310 dd1: 131.772106 2009-05-12 18:32:06,962 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:06,962 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:06,962 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/adcpdb 2009-05-12 18:32:06,962 DEBUG quick_setup running python command "method" 2009-05-12 18:32:06,962 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:06,962 DEBUG quick_subs extracting time range 2009-05-12 18:32:06,962 DEBUG quick_subs start_end_time 2009/05/07 11:07:10 to 2009/05/12 18:31:50 2009-05-12 18:32:06,963 DEBUG quick_subs dd0: 126.463310 dd1: 131.772106 2009-05-12 18:32:06,963 DEBUG quick_adcp loaded_time_range is 2009/05/07 11:07:10 to 2009/05/12 18:31:50 2009-05-12 18:32:06,963 DEBUG quick_adcp (126.463310 to 131.772106) 2009-05-12 18:32:06,963 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:06,963 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/adcpdb 2009-05-12 18:32:06,963 DEBUG quick_setup running python command "method" 2009-05-12 18:32:06,963 DEBUG quick_subs dbname: a_mv output: a_mv.cnh time_ranges: all 2009-05-12 18:32:06,964 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2009-05-12 18:32:06,977 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2009-05-12 18:32:06,977 DEBUG quick_run executing commands from /home/data/MV0907/proc/os75bb/edit 2009-05-12 18:32:06,977 DEBUG quick_run setup.m exists. not replacing 2009-05-12 18:32:06,977 DEBUG quick_run asetup.m exists. not replacing 2009-05-12 18:32:06,977 DEBUG quick_run aflagit_setup.m exists. not replacing 2009-05-12 18:32:06,977 DEBUG quick_run ------------ step 4: run setflags ------------- 2009-05-12 18:32:06,978 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:06,978 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/edit 2009-05-12 18:32:06,978 DEBUG quick_setup running python command "method" 2009-05-12 18:32:06,978 DEBUG quick_subs dbname: ../adcpdb/a_mv pg_min: 50 set_range_bit time_ranges: all 2009-05-12 18:32:06,978 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-05-12 18:32:07,004 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2009-05-12 18:32:07,004 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:07,005 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/nav 2009-05-12 18:32:07,005 DEBUG quick_setup running python command "method" 2009-05-12 18:32:07,007 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2009-05-12 18:32:07,007 DEBUG quick_run hcorr_inst is ashtech 2009-05-12 18:32:07,007 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2009-05-12 18:32:07,007 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:07,007 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/cal/rotate 2009-05-12 18:32:07,007 DEBUG quick_setup running python command "method" 2009-05-12 18:32:07,007 DEBUG quick_subs dbname: ../../adcpdb/a_mv output: scn.hdg step_size= 1 year_base= 2009 time_ranges: all 2009-05-12 18:32:07,007 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2009-05-12 18:32:07,025 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:07,025 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/cal/rotate 2009-05-12 18:32:07,025 DEBUG quick_setup running python command "method" 2009-05-12 18:32:07,207 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') hcorfile = 'ens_hcorr.asc'; proc_yearbase = 2009; cruiseid = 'MV0907'; if exist(hcorfile) plot_hcorstats('comment', cruiseid,... 'proc_yearbase', proc_yearbase,... 'plot_ddrange', 1,... 'plottype','fancy',... 'hcorfile', hcorfile,... 'gps_attname', 'ashtech',... 'cruiseid', cruiseid,... 'outfilebase', 'hcorr'); end 2009-05-12 18:32:08,814 DEBUG quick_run ------------ step 7: rotate ------------- 2009-05-12 18:32:08,814 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:08,814 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/cal/rotate 2009-05-12 18:32:08,814 DEBUG quick_setup running python command "method" 2009-05-12 18:32:08,831 DEBUG quick_subs last rotated time from log file: 2009/05/12 18:01:45 2009-05-12 18:32:08,831 DEBUG quick_subs time range of currently loaded data: 2009/05/07 11:07:10 to 2009/05/12 18:31:50 2009-05-12 18:32:08,831 DEBUG quick_subs (126.463310 to 131.772106) 2009-05-12 18:32:08,831 DEBUG quick_setup cal/rotate/rotate.tmp exists 2009-05-12 18:32:08,832 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:08,832 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/cal/rotate 2009-05-12 18:32:08,832 DEBUG quick_setup running python command "method" 2009-05-12 18:32:08,832 DEBUG quick_subs DB_NAME: ../../adcpdb/a_mv LOG_FILE: rotate.log TIME_RANGE: 2009/05/12 14:18:48 to 2009/05/12 18:31:59 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2009 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2009-05-12 18:32:08,832 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2009-05-12 18:32:08,837 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-05-12 18:32:08,838 DEBUG quick_setup nav/as_nav.tmp exists 2009-05-12 18:32:08,838 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:08,838 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/nav 2009-05-12 18:32:08,838 DEBUG quick_setup running python command "method" 2009-05-12 18:32:08,838 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/05/07 11:07:10 to 2009/05/12 18:31:50 /* the whole time range */ 2009-05-12 18:32:08,838 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-05-12 18:32:08,905 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-05-12 18:32:08,906 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:08,906 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/nav 2009-05-12 18:32:08,906 DEBUG quick_setup running python command "method" 2009-05-12 18:32:08,906 DEBUG quick_subs fix_file_type: simple reference_file: a_mv.nav fix_file: a_mv.gps output: a_mv.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-05-12 18:32:08,906 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-05-12 18:32:08,932 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-05-12 18:32:08,932 DEBUG quick_setup nav/smoothr.tmp exists 2009-05-12 18:32:08,932 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:08,932 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/nav 2009-05-12 18:32:08,933 DEBUG quick_setup running python command "method" 2009-05-12 18:32:08,933 DEBUG quick_subs reference_file: a_mv.nav refabs_output: a_mv.ref output: a_mv.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-05-12 18:32:08,933 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-05-12 18:32:09,054 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:09,055 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/nav 2009-05-12 18:32:09,055 DEBUG quick_setup running python command "method" 2009-05-12 18:32:09,055 DEBUG call_matlab --> clear all 2009-05-12 18:32:09,085 DEBUG call_matlab <-- >> 2009-05-12 18:32:09,085 DEBUG call_matlab --> close all 2009-05-12 18:32:09,139 DEBUG call_matlab <-- >> 2009-05-12 18:32:09,139 DEBUG call_matlab --> cd /home/data/MV0907/proc/os75bb/nav 2009-05-12 18:32:09,141 DEBUG call_matlab <-- >> 2009-05-12 18:32:09,141 DEBUG call_matlab --> refsm 2009-05-12 18:32:09,662 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_mv opened Searching CODAS database ==> ../adcpdb/a_mv for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 1511 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 90 percent done... 100 percent done... >> 2009-05-12 18:32:09,663 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-05-12 18:32:09,663 DEBUG quick_setup nav/putnav.tmp exists 2009-05-12 18:32:09,663 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:09,663 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/nav 2009-05-12 18:32:09,663 DEBUG quick_setup running python command "method" 2009-05-12 18:32:09,663 DEBUG quick_subs dbname: ../adcpdb/a_mv position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-05-12 18:32:09,663 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-05-12 18:32:09,704 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-05-12 18:32:09,704 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:09,704 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/nav 2009-05-12 18:32:09,704 DEBUG quick_setup running python command "method" 2009-05-12 18:32:09,705 DEBUG quick_subs Created callrtmp.m 2009-05-12 18:32:09,705 DEBUG call_matlab --> clear all 2009-05-12 18:32:09,711 DEBUG call_matlab <-- >> 2009-05-12 18:32:09,711 DEBUG call_matlab --> close all 2009-05-12 18:32:09,749 DEBUG call_matlab <-- >> 2009-05-12 18:32:09,749 DEBUG call_matlab --> cd /home/data/MV0907/proc/os75bb/nav 2009-05-12 18:32:09,751 DEBUG call_matlab <-- >> 2009-05-12 18:32:09,751 DEBUG call_matlab --> callrtmp_tmp 2009-05-12 18:32:10,596 DEBUG call_matlab <-- cruise = MV0907 cruise = MV0907 cruise = MV0907 No data available. >> 2009-05-12 18:32:10,596 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2009-05-12 18:32:10,596 DEBUG quick_run find profile flags ------------ *** ------------- 2009-05-12 18:32:10,596 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:10,596 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/edit 2009-05-12 18:32:10,597 DEBUG quick_setup running python command "method" 2009-05-12 18:32:11,492 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2009-05-12 18:32:11,492 DEBUG quick_run starting in: /home/data/MV0907/proc/os75bb 2009-05-12 18:32:11,492 DEBUG quick_run executing commands from: edit 2009-05-12 18:32:11,494 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_mv abadbin_tmp.asc 2009-05-12 18:32:11,500 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_mv 2009-05-12 18:32:11,504 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-05-12 18:32:11,529 DEBUG quick_run changing directories back to /home/data/MV0907/proc/os75bb 2009-05-12 18:32:11,529 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2009-05-12 18:32:11,529 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-05-12 18:32:11,530 DEBUG quick_setup nav/as_nav.tmp exists 2009-05-12 18:32:11,530 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:11,530 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/nav 2009-05-12 18:32:11,530 DEBUG quick_setup running python command "method" 2009-05-12 18:32:11,530 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/05/07 11:07:10 to 2009/05/12 18:31:50 /* the whole time range */ 2009-05-12 18:32:11,530 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-05-12 18:32:11,564 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-05-12 18:32:11,564 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:11,564 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/nav 2009-05-12 18:32:11,564 DEBUG quick_setup running python command "method" 2009-05-12 18:32:11,564 DEBUG quick_subs fix_file_type: simple reference_file: a_mv.nav fix_file: a_mv.gps output: a_mv.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-05-12 18:32:11,565 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-05-12 18:32:11,591 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-05-12 18:32:11,592 DEBUG quick_setup nav/smoothr.tmp exists 2009-05-12 18:32:11,592 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:11,592 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/nav 2009-05-12 18:32:11,592 DEBUG quick_setup running python command "method" 2009-05-12 18:32:11,592 DEBUG quick_subs reference_file: a_mv.nav refabs_output: a_mv.ref output: a_mv.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-05-12 18:32:11,592 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-05-12 18:32:11,714 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:11,715 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/nav 2009-05-12 18:32:11,715 DEBUG quick_setup running python command "method" 2009-05-12 18:32:11,715 DEBUG call_matlab --> clear all 2009-05-12 18:32:11,725 DEBUG call_matlab <-- >> 2009-05-12 18:32:11,726 DEBUG call_matlab --> close all 2009-05-12 18:32:11,765 DEBUG call_matlab <-- >> 2009-05-12 18:32:11,765 DEBUG call_matlab --> cd /home/data/MV0907/proc/os75bb/nav 2009-05-12 18:32:11,767 DEBUG call_matlab <-- >> 2009-05-12 18:32:11,767 DEBUG call_matlab --> refsm 2009-05-12 18:32:12,302 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_mv opened Searching CODAS database ==> ../adcpdb/a_mv for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 1511 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 90 percent done... 100 percent done... >> 2009-05-12 18:32:12,302 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-05-12 18:32:12,302 DEBUG quick_setup nav/putnav.tmp exists 2009-05-12 18:32:12,302 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:12,302 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/nav 2009-05-12 18:32:12,302 DEBUG quick_setup running python command "method" 2009-05-12 18:32:12,303 DEBUG quick_subs dbname: ../adcpdb/a_mv position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-05-12 18:32:12,303 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-05-12 18:32:12,401 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-05-12 18:32:13,124 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:13,125 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/nav 2009-05-12 18:32:13,125 DEBUG quick_setup running python command "method" 2009-05-12 18:32:13,126 DEBUG quick_subs Created callrtmp.m 2009-05-12 18:32:13,126 DEBUG call_matlab --> clear all 2009-05-12 18:32:13,135 DEBUG call_matlab <-- >> 2009-05-12 18:32:13,135 DEBUG call_matlab --> close all 2009-05-12 18:32:13,173 DEBUG call_matlab <-- >> 2009-05-12 18:32:13,173 DEBUG call_matlab --> cd /home/data/MV0907/proc/os75bb/nav 2009-05-12 18:32:13,175 DEBUG call_matlab <-- >> 2009-05-12 18:32:13,175 DEBUG call_matlab --> callrtmp_tmp 2009-05-12 18:32:14,030 DEBUG call_matlab <-- cruise = MV0907 cruise = MV0907 cruise = MV0907 No data available. >> 2009-05-12 18:32:14,030 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2009-05-12 18:32:14,030 DEBUG quick_setup edit/lst_temp.tmp exists 2009-05-12 18:32:14,031 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:14,031 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/edit 2009-05-12 18:32:14,031 DEBUG quick_setup running python command "method" 2009-05-12 18:32:14,031 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv.tem step_size= 1 year_base= 2009 time_ranges: all 2009-05-12 18:32:14,031 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2009-05-12 18:32:14,052 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:14,052 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/edit 2009-05-12 18:32:14,053 DEBUG quick_setup running python command "method" 2009-05-12 18:32:14,642 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2009-05-12 18:32:14,642 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2009-05-12 18:32:14,643 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:14,643 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/cal/botmtrk 2009-05-12 18:32:14,643 DEBUG quick_setup running python command "method" 2009-05-12 18:32:14,643 DEBUG quick_subs dbname: ../../adcpdb/a_mv output: a_mv.btm step_size= 1 year_base= 2009 time_ranges: 2009/05/07 11:07:10 to 2009/05/12 18:31:50 /* whole time range */ 2009-05-12 18:32:14,643 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2009-05-12 18:32:14,653 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2009-05-12 18:32:14,653 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:14,654 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/cal/botmtrk 2009-05-12 18:32:14,654 DEBUG quick_setup running python command "method" 2009-05-12 18:32:14,654 DEBUG quick_subs fix_file_type: simple reference_file: a_mv.btm fix_file: ../../nav/a_mv.gps output: a_mv.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 60 2009-05-12 18:32:14,654 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2009-05-12 18:32:14,658 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:14,659 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/cal/botmtrk 2009-05-12 18:32:14,659 DEBUG quick_setup running python command "method" 2009-05-12 18:32:14,659 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') [a, ph, gd_mask, d] = ... btcaluv('a_mv.ref','a_mv.btm',... 'ADCP MV0907 step size 1 ', 1); 2009-05-12 18:32:14,779 DEBUG quick_setup nav/as_nav.tmp exists 2009-05-12 18:32:14,779 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:14,779 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/nav 2009-05-12 18:32:14,779 DEBUG quick_setup running python command "method" 2009-05-12 18:32:14,779 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/05/07 11:07:10 to 2009/05/12 18:31:50 /* the whole time range */ 2009-05-12 18:32:14,779 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-05-12 18:32:14,815 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2009-05-12 18:32:14,816 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:14,816 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/cal/watertrk 2009-05-12 18:32:14,816 DEBUG quick_setup running python command "method" 2009-05-12 18:32:14,816 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_mv.gps reference_file: ../../nav/a_mv.nav output_file: a_mv_7.cal year_base= 2009 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2009-05-12 18:32:14,816 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2009-05-12 18:32:14,830 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:14,831 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/cal/watertrk 2009-05-12 18:32:14,831 DEBUG quick_setup running python command "method" 2009-05-12 18:32:14,831 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') adcpcal('a_mv_7.cal', 'ADCP MV0907 7ens') 2009-05-12 18:32:14,831 DEBUG call_matlab --> clear all 2009-05-12 18:32:14,836 DEBUG call_matlab <-- >> 2009-05-12 18:32:14,836 DEBUG call_matlab --> close all 2009-05-12 18:32:14,874 DEBUG call_matlab <-- >> 2009-05-12 18:32:14,874 DEBUG call_matlab --> cd /home/data/MV0907/proc/os75bb/cal/watertrk 2009-05-12 18:32:14,876 DEBUG call_matlab <-- >> 2009-05-12 18:32:14,876 DEBUG call_matlab --> calladcpcal_tmp 2009-05-12 18:32:15,674 DEBUG call_matlab <-- figure saved as cal1.ps figure saved as cal2.ps ans = 40 ans = j_ph: 11 j_amp: 10 j_t: 2 j_du: 5 j_dv: 6 j_dt: 9 j_mvar: 8 j_var: 7 calr: [29x11 double] igood: [26x1 double] >> 2009-05-12 18:32:15,674 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2009-05-12 18:32:15,674 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:15,674 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/vector 2009-05-12 18:32:15,675 DEBUG quick_setup running python command "method" 2009-05-12 18:32:15,675 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_mv.tmp 2009-05-12 18:32:15,680 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:15,680 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/vector 2009-05-12 18:32:15,680 DEBUG quick_setup running python command "method" 2009-05-12 18:32:15,680 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2009-05-12 18:32:15,731 DEBUG quick_asect done making vector matfiles 2009-05-12 18:32:15,732 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:15,732 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/contour 2009-05-12 18:32:15,732 DEBUG quick_setup running python command "method" 2009-05-12 18:32:15,732 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_mv.tmp 2009-05-12 18:32:15,739 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:15,739 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/contour 2009-05-12 18:32:15,739 DEBUG quick_setup running python command "method" 2009-05-12 18:32:15,739 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2009-05-12 18:32:15,814 DEBUG quick_setup starting in /home/data/MV0907/proc/os75bb 2009-05-12 18:32:15,815 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os75bb/contour 2009-05-12 18:32:15,815 DEBUG quick_setup about to run getmat -rs -f allbins_ ../adcpdb/a_mv 2009-05-12 18:32:15,955 DEBUG quick_asect done running getmat with "allbins" 2009-05-12 18:32:15,956 INFO root copying NOFIG to /home/adcp/www/figures/os75bb_hcorr_plot.png 2009-05-12 18:32:15,956 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75bb_hcorr_plot_thumb.png 2009-05-12 18:32:15,956 DEBUG root matfile is contour/contour_uv.mat 2009-05-12 18:32:15,959 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75bb_cont_uv.mat 2009-05-12 18:32:15,960 DEBUG root matfile is vector/vector_uv.mat 2009-05-12 18:32:15,960 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75bb_vect_uv.mat 2009-05-12 18:32:15,960 DEBUG root matfile is contour/contour_xy.mat 2009-05-12 18:32:15,960 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75bb_cont_xy.mat 2009-05-12 18:32:15,961 DEBUG root matfile is vector/vector_xy.mat 2009-05-12 18:32:15,961 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75bb_vect_xy.mat 2009-05-12 18:32:15,961 DEBUG root about to copy file edit/a_mv.tem to /home/adcp/www/data/os75bb_temp.asc 2009-05-12 18:32:15,961 INFO root copying edit/a_mv.tem to /home/adcp/www/data/os75bb_temp.asc 2009-05-12 18:32:15,962 INFO root Ending quick_adcp.py 2009-05-12 18:32:16,019 DEBUG quick_setup killed matlab engine