2009-05-12 18:33:07,529 DEBUG root about to write control file parameters to --yearbase 2009 --pingtype nb --cfgbase MV0907 --cruisename MV0907 --instclass os --instname os150 --dbname a_mv --datatype uhdas --datadir /home/data/MV0907/raw/os150 --cfgpath /home/data/MV0907/proc/os150nb/config --ens_len 300 --ping_headcorr --hcorr_inst ashtech --use_topo4edit ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --acc_heading_cutoff 0.020000 2009-05-12 18:33:07,531 DEBUG quick_adcp progdir = /home/currents/programs 2009-05-12 18:33:07,531 DEBUG quick_adcp binos = lnx 2009-05-12 18:33:07,531 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2009-05-12 18:33:07,531 DEBUG quick_setup yearbase is 2009, proc_yearbase is 2009 2009-05-12 18:33:07,532 DEBUG quick_setup processing data logged with uhdas: 2009-05-12 18:33:07,532 DEBUG quick_setup datatype is uhdas 2009-05-12 18:33:07,532 DEBUG quick_setup pingtype is nb 2009-05-12 18:33:07,532 DEBUG quick_setup instclass is os 2009-05-12 18:33:07,532 DEBUG quick_setup no post-processing heading correction will be used 2009-05-12 18:33:07,532 DEBUG quick_setup transducer depth set in *_cfg.m file 2009-05-12 18:33:07,532 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os150'; pingtype = 'nb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'MV0907',... 'cfgpath' , '/home/data/MV0907/proc/os150nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2009-05-12 18:33:07,532 DEBUG quick_setup ------- starting Matlab engine ------- 2009-05-12 18:33:07,532 DEBUG quick_setup ['/home/currents/programs/matlab'] 2009-05-12 18:33:07,534 DEBUG call_matlab starting to wait for initial prompt 2009-05-12 18:33:08,220 DEBUG call_matlab received initial prompt 2009-05-12 18:33:08,379 DEBUG quick_adcp cwd is /home/data/MV0907/proc/os150nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-05-12 18:33:08,379 DEBUG quick_adcp original fix file is a_mv.gps 2009-05-12 18:33:08,379 DEBUG quick_adcp smoothed nav file is refsm.sm 2009-05-12 18:33:08,380 DEBUG quick_asect extracting matlab files for os150, nb pings 2009-05-12 18:33:08,531 DEBUG quick_subs found 65 files using wildcard expansion from "/home/data/MV0907/raw/os150/*.raw" 2009-05-12 18:33:08,531 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/MV0907/raw/os150/mv2009_126_39717.raw /home/data/MV0907/raw/os150/mv2009_126_43200.raw /home/data/MV0907/raw/os150/mv2009_126_50400.raw /home/data/MV0907/raw/os150/mv2009_126_57600.raw /home/data/MV0907/raw/os150/mv2009_126_64800.raw /home/data/MV0907/raw/os150/mv2009_126_72000.raw /home/data/MV0907/raw/os150/mv2009_126_79200.raw /home/data/MV0907/raw/os150/mv2009_127_00000.raw /home/data/MV0907/raw/os150/mv2009_127_07200.raw /home/data/MV0907/raw/os150/mv2009_127_14400.raw /home/data/MV0907/raw/os150/mv2009_127_21600.raw /home/data/MV0907/raw/os150/mv2009_127_28800.raw /home/data/MV0907/raw/os150/mv2009_127_36000.raw /home/data/MV0907/raw/os150/mv2009_127_43200.raw /home/data/MV0907/raw/os150/mv2009_127_50400.raw /home/data/MV0907/raw/os150/mv2009_127_57600.raw /home/data/MV0907/raw/os150/mv2009_127_64800.raw /home/data/MV0907/raw/os150/mv2009_127_72000.raw /home/data/MV0907/raw/os150/mv2009_127_79200.raw /home/data/MV0907/raw/os150/mv2009_128_00000.raw /home/data/MV0907/raw/os150/mv2009_128_07200.raw /home/data/MV0907/raw/os150/mv2009_128_14400.raw /home/data/MV0907/raw/os150/mv2009_128_21600.raw /home/data/MV0907/raw/os150/mv2009_128_28800.raw /home/data/MV0907/raw/os150/mv2009_128_36000.raw /home/data/MV0907/raw/os150/mv2009_128_43200.raw /home/data/MV0907/raw/os150/mv2009_128_50400.raw /home/data/MV0907/raw/os150/mv2009_128_57600.raw /home/data/MV0907/raw/os150/mv2009_128_64800.raw /home/data/MV0907/raw/os150/mv2009_128_72000.raw /home/data/MV0907/raw/os150/mv2009_128_79200.raw /home/data/MV0907/raw/os150/mv2009_129_00000.raw /home/data/MV0907/raw/os150/mv2009_129_07200.raw /home/data/MV0907/raw/os150/mv2009_129_14400.raw /home/data/MV0907/raw/os150/mv2009_129_21600.raw /home/data/MV0907/raw/os150/mv2009_129_28800.raw /home/data/MV0907/raw/os150/mv2009_129_36000.raw /home/data/MV0907/raw/os150/mv2009_129_43200.raw /home/data/MV0907/raw/os150/mv2009_129_50400.raw /home/data/MV0907/raw/os150/mv2009_129_57600.raw /home/data/MV0907/raw/os150/mv2009_129_64800.raw /home/data/MV0907/raw/os150/mv2009_129_72000.raw /home/data/MV0907/raw/os150/mv2009_129_79200.raw /home/data/MV0907/raw/os150/mv2009_130_00000.raw /home/data/MV0907/raw/os150/mv2009_130_07200.raw /home/data/MV0907/raw/os150/mv2009_130_14400.raw /home/data/MV0907/raw/os150/mv2009_130_21600.raw /home/data/MV0907/raw/os150/mv2009_130_28800.raw /home/data/MV0907/raw/os150/mv2009_130_36000.raw /home/data/MV0907/raw/os150/mv2009_130_43200.raw /home/data/MV0907/raw/os150/mv2009_130_50400.raw /home/data/MV0907/raw/os150/mv2009_130_57600.raw /home/data/MV0907/raw/os150/mv2009_130_64800.raw /home/data/MV0907/raw/os150/mv2009_130_72000.raw /home/data/MV0907/raw/os150/mv2009_130_79200.raw /home/data/MV0907/raw/os150/mv2009_131_00000.raw /home/data/MV0907/raw/os150/mv2009_131_07200.raw /home/data/MV0907/raw/os150/mv2009_131_14400.raw /home/data/MV0907/raw/os150/mv2009_131_21600.raw /home/data/MV0907/raw/os150/mv2009_131_28800.raw /home/data/MV0907/raw/os150/mv2009_131_36000.raw /home/data/MV0907/raw/os150/mv2009_131_43200.raw /home/data/MV0907/raw/os150/mv2009_131_50400.raw /home/data/MV0907/raw/os150/mv2009_131_57600.raw /home/data/MV0907/raw/os150/mv2009_131_64800.raw 2009-05-12 18:33:08,532 DEBUG quick_adcp LASTFILES invoked. using only 65 files from end of filelist 2009-05-12 18:33:08,532 DEBUG quick_adcp using delblks = 1 2009-05-12 18:33:08,532 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/MV0907/raw/os150/mv2009_126_39717.raw /home/data/MV0907/raw/os150/mv2009_126_43200.raw /home/data/MV0907/raw/os150/mv2009_126_50400.raw /home/data/MV0907/raw/os150/mv2009_126_57600.raw /home/data/MV0907/raw/os150/mv2009_126_64800.raw /home/data/MV0907/raw/os150/mv2009_126_72000.raw /home/data/MV0907/raw/os150/mv2009_126_79200.raw /home/data/MV0907/raw/os150/mv2009_127_00000.raw /home/data/MV0907/raw/os150/mv2009_127_07200.raw /home/data/MV0907/raw/os150/mv2009_127_14400.raw /home/data/MV0907/raw/os150/mv2009_127_21600.raw /home/data/MV0907/raw/os150/mv2009_127_28800.raw /home/data/MV0907/raw/os150/mv2009_127_36000.raw /home/data/MV0907/raw/os150/mv2009_127_43200.raw /home/data/MV0907/raw/os150/mv2009_127_50400.raw /home/data/MV0907/raw/os150/mv2009_127_57600.raw /home/data/MV0907/raw/os150/mv2009_127_64800.raw /home/data/MV0907/raw/os150/mv2009_127_72000.raw /home/data/MV0907/raw/os150/mv2009_127_79200.raw /home/data/MV0907/raw/os150/mv2009_128_00000.raw /home/data/MV0907/raw/os150/mv2009_128_07200.raw /home/data/MV0907/raw/os150/mv2009_128_14400.raw /home/data/MV0907/raw/os150/mv2009_128_21600.raw /home/data/MV0907/raw/os150/mv2009_128_28800.raw /home/data/MV0907/raw/os150/mv2009_128_36000.raw /home/data/MV0907/raw/os150/mv2009_128_43200.raw /home/data/MV0907/raw/os150/mv2009_128_50400.raw /home/data/MV0907/raw/os150/mv2009_128_57600.raw /home/data/MV0907/raw/os150/mv2009_128_64800.raw /home/data/MV0907/raw/os150/mv2009_128_72000.raw /home/data/MV0907/raw/os150/mv2009_128_79200.raw /home/data/MV0907/raw/os150/mv2009_129_00000.raw /home/data/MV0907/raw/os150/mv2009_129_07200.raw /home/data/MV0907/raw/os150/mv2009_129_14400.raw /home/data/MV0907/raw/os150/mv2009_129_21600.raw /home/data/MV0907/raw/os150/mv2009_129_28800.raw /home/data/MV0907/raw/os150/mv2009_129_36000.raw /home/data/MV0907/raw/os150/mv2009_129_43200.raw /home/data/MV0907/raw/os150/mv2009_129_50400.raw /home/data/MV0907/raw/os150/mv2009_129_57600.raw /home/data/MV0907/raw/os150/mv2009_129_64800.raw /home/data/MV0907/raw/os150/mv2009_129_72000.raw /home/data/MV0907/raw/os150/mv2009_129_79200.raw /home/data/MV0907/raw/os150/mv2009_130_00000.raw /home/data/MV0907/raw/os150/mv2009_130_07200.raw /home/data/MV0907/raw/os150/mv2009_130_14400.raw /home/data/MV0907/raw/os150/mv2009_130_21600.raw /home/data/MV0907/raw/os150/mv2009_130_28800.raw /home/data/MV0907/raw/os150/mv2009_130_36000.raw /home/data/MV0907/raw/os150/mv2009_130_43200.raw /home/data/MV0907/raw/os150/mv2009_130_50400.raw /home/data/MV0907/raw/os150/mv2009_130_57600.raw /home/data/MV0907/raw/os150/mv2009_130_64800.raw /home/data/MV0907/raw/os150/mv2009_130_72000.raw /home/data/MV0907/raw/os150/mv2009_130_79200.raw /home/data/MV0907/raw/os150/mv2009_131_00000.raw /home/data/MV0907/raw/os150/mv2009_131_07200.raw /home/data/MV0907/raw/os150/mv2009_131_14400.raw /home/data/MV0907/raw/os150/mv2009_131_21600.raw /home/data/MV0907/raw/os150/mv2009_131_28800.raw /home/data/MV0907/raw/os150/mv2009_131_36000.raw /home/data/MV0907/raw/os150/mv2009_131_43200.raw /home/data/MV0907/raw/os150/mv2009_131_50400.raw /home/data/MV0907/raw/os150/mv2009_131_57600.raw /home/data/MV0907/raw/os150/mv2009_131_64800.raw 2009-05-12 18:33:08,533 DEBUG quick_adcp Tue May 12 18:33:08 2009 running quick_adcp.py as follows: --cntfile /home/data/MV0907/proc/os150nb/os150nb_qpy.cnt ----- adcpsect variables ------ afilebase a_mv cbasename contour dbname a_mv dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300] firstdepth 17 gridnum 50 increment 8 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2009 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.02 adjust_time 1 afilebase a_mv allow_reload True auto True bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase MV0907 cfgpath /home/data/MV0907/proc/os150nb/config cntfile /home/data/MV0907/proc/os150nb/os150nb_qpy.cnt commands None cruisename MV0907 data_def vmadcp.def datadir /home/data/MV0907/raw/os150 datafile_glob *.raw datatype uhdas dbname a_mv dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False filelist ['/home/data/MV0907/raw/os150/mv2009_126_39717.raw', '/home/data/MV0907/raw/os150/mv2009_126_43200.raw', '/home/data/MV0907/raw/os150/mv2009_126_50400.raw', '/home/data/MV0907/raw/os150/mv2009_126_57600.raw', '/home/data/MV0907/raw/os150/mv2009_126_64800.raw', '/home/data/MV0907/raw/os150/mv2009_126_72000.raw', '/home/data/MV0907/raw/os150/mv2009_126_79200.raw', '/home/data/MV0907/raw/os150/mv2009_127_00000.raw', '/home/data/MV0907/raw/os150/mv2009_127_07200.raw', '/home/data/MV0907/raw/os150/mv2009_127_14400.raw', '/home/data/MV0907/raw/os150/mv2009_127_21600.raw', '/home/data/MV0907/raw/os150/mv2009_127_28800.raw', '/home/data/MV0907/raw/os150/mv2009_127_36000.raw', '/home/data/MV0907/raw/os150/mv2009_127_43200.raw', '/home/data/MV0907/raw/os150/mv2009_127_50400.raw', '/home/data/MV0907/raw/os150/mv2009_127_57600.raw', '/home/data/MV0907/raw/os150/mv2009_127_64800.raw', '/home/data/MV0907/raw/os150/mv2009_127_72000.raw', '/home/data/MV0907/raw/os150/mv2009_127_79200.raw', '/home/data/MV0907/raw/os150/mv2009_128_00000.raw', '/home/data/MV0907/raw/os150/mv2009_128_07200.raw', '/home/data/MV0907/raw/os150/mv2009_128_14400.raw', '/home/data/MV0907/raw/os150/mv2009_128_21600.raw', '/home/data/MV0907/raw/os150/mv2009_128_28800.raw', '/home/data/MV0907/raw/os150/mv2009_128_36000.raw', '/home/data/MV0907/raw/os150/mv2009_128_43200.raw', '/home/data/MV0907/raw/os150/mv2009_128_50400.raw', '/home/data/MV0907/raw/os150/mv2009_128_57600.raw', '/home/data/MV0907/raw/os150/mv2009_128_64800.raw', '/home/data/MV0907/raw/os150/mv2009_128_72000.raw', '/home/data/MV0907/raw/os150/mv2009_128_79200.raw', '/home/data/MV0907/raw/os150/mv2009_129_00000.raw', '/home/data/MV0907/raw/os150/mv2009_129_07200.raw', '/home/data/MV0907/raw/os150/mv2009_129_14400.raw', '/home/data/MV0907/raw/os150/mv2009_129_21600.raw', '/home/data/MV0907/raw/os150/mv2009_129_28800.raw', '/home/data/MV0907/raw/os150/mv2009_129_36000.raw', '/home/data/MV0907/raw/os150/mv2009_129_43200.raw', '/home/data/MV0907/raw/os150/mv2009_129_50400.raw', '/home/data/MV0907/raw/os150/mv2009_129_57600.raw', '/home/data/MV0907/raw/os150/mv2009_129_64800.raw', '/home/data/MV0907/raw/os150/mv2009_129_72000.raw', '/home/data/MV0907/raw/os150/mv2009_129_79200.raw', '/home/data/MV0907/raw/os150/mv2009_130_00000.raw', '/home/data/MV0907/raw/os150/mv2009_130_07200.raw', '/home/data/MV0907/raw/os150/mv2009_130_14400.raw', '/home/data/MV0907/raw/os150/mv2009_130_21600.raw', '/home/data/MV0907/raw/os150/mv2009_130_28800.raw', '/home/data/MV0907/raw/os150/mv2009_130_36000.raw', '/home/data/MV0907/raw/os150/mv2009_130_43200.raw', '/home/data/MV0907/raw/os150/mv2009_130_50400.raw', '/home/data/MV0907/raw/os150/mv2009_130_57600.raw', '/home/data/MV0907/raw/os150/mv2009_130_64800.raw', '/home/data/MV0907/raw/os150/mv2009_130_72000.raw', '/home/data/MV0907/raw/os150/mv2009_130_79200.raw', '/home/data/MV0907/raw/os150/mv2009_131_00000.raw', '/home/data/MV0907/raw/os150/mv2009_131_07200.raw', '/home/data/MV0907/raw/os150/mv2009_131_14400.raw', '/home/data/MV0907/raw/os150/mv2009_131_21600.raw', '/home/data/MV0907/raw/os150/mv2009_131_28800.raw', '/home/data/MV0907/raw/os150/mv2009_131_36000.raw', '/home/data/MV0907/raw/os150/mv2009_131_43200.raw', '/home/data/MV0907/raw/os150/mv2009_131_50400.raw', '/home/data/MV0907/raw/os150/mv2009_131_57600.raw', '/home/data/MV0907/raw/os150/mv2009_131_64800.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 17 fixfile a_mv.gps hcorr_inst ashtech head_func None help False hidedisplay True howto_lta False howto_ping False instclass os instname os150 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os150'; pingtype = 'nb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'MV0907',... 'cfgpath' , '/home/data/MV0907/proc/os150nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_mv.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False proc_yearbase 2009 procdir os150nb progdir /home/currents/programs quiet True rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/MV0907/raw/os150/mv2009_126_39717.raw', '/home/data/MV0907/raw/os150/mv2009_126_43200.raw', '/home/data/MV0907/raw/os150/mv2009_126_50400.raw', '/home/data/MV0907/raw/os150/mv2009_126_57600.raw', '/home/data/MV0907/raw/os150/mv2009_126_64800.raw', '/home/data/MV0907/raw/os150/mv2009_126_72000.raw', '/home/data/MV0907/raw/os150/mv2009_126_79200.raw', '/home/data/MV0907/raw/os150/mv2009_127_00000.raw', '/home/data/MV0907/raw/os150/mv2009_127_07200.raw', '/home/data/MV0907/raw/os150/mv2009_127_14400.raw', '/home/data/MV0907/raw/os150/mv2009_127_21600.raw', '/home/data/MV0907/raw/os150/mv2009_127_28800.raw', '/home/data/MV0907/raw/os150/mv2009_127_36000.raw', '/home/data/MV0907/raw/os150/mv2009_127_43200.raw', '/home/data/MV0907/raw/os150/mv2009_127_50400.raw', '/home/data/MV0907/raw/os150/mv2009_127_57600.raw', '/home/data/MV0907/raw/os150/mv2009_127_64800.raw', '/home/data/MV0907/raw/os150/mv2009_127_72000.raw', '/home/data/MV0907/raw/os150/mv2009_127_79200.raw', '/home/data/MV0907/raw/os150/mv2009_128_00000.raw', '/home/data/MV0907/raw/os150/mv2009_128_07200.raw', '/home/data/MV0907/raw/os150/mv2009_128_14400.raw', '/home/data/MV0907/raw/os150/mv2009_128_21600.raw', '/home/data/MV0907/raw/os150/mv2009_128_28800.raw', '/home/data/MV0907/raw/os150/mv2009_128_36000.raw', '/home/data/MV0907/raw/os150/mv2009_128_43200.raw', '/home/data/MV0907/raw/os150/mv2009_128_50400.raw', '/home/data/MV0907/raw/os150/mv2009_128_57600.raw', '/home/data/MV0907/raw/os150/mv2009_128_64800.raw', '/home/data/MV0907/raw/os150/mv2009_128_72000.raw', '/home/data/MV0907/raw/os150/mv2009_128_79200.raw', '/home/data/MV0907/raw/os150/mv2009_129_00000.raw', '/home/data/MV0907/raw/os150/mv2009_129_07200.raw', '/home/data/MV0907/raw/os150/mv2009_129_14400.raw', '/home/data/MV0907/raw/os150/mv2009_129_21600.raw', '/home/data/MV0907/raw/os150/mv2009_129_28800.raw', '/home/data/MV0907/raw/os150/mv2009_129_36000.raw', '/home/data/MV0907/raw/os150/mv2009_129_43200.raw', '/home/data/MV0907/raw/os150/mv2009_129_50400.raw', '/home/data/MV0907/raw/os150/mv2009_129_57600.raw', '/home/data/MV0907/raw/os150/mv2009_129_64800.raw', '/home/data/MV0907/raw/os150/mv2009_129_72000.raw', '/home/data/MV0907/raw/os150/mv2009_129_79200.raw', '/home/data/MV0907/raw/os150/mv2009_130_00000.raw', '/home/data/MV0907/raw/os150/mv2009_130_07200.raw', '/home/data/MV0907/raw/os150/mv2009_130_14400.raw', '/home/data/MV0907/raw/os150/mv2009_130_21600.raw', '/home/data/MV0907/raw/os150/mv2009_130_28800.raw', '/home/data/MV0907/raw/os150/mv2009_130_36000.raw', '/home/data/MV0907/raw/os150/mv2009_130_43200.raw', '/home/data/MV0907/raw/os150/mv2009_130_50400.raw', '/home/data/MV0907/raw/os150/mv2009_130_57600.raw', '/home/data/MV0907/raw/os150/mv2009_130_64800.raw', '/home/data/MV0907/raw/os150/mv2009_130_72000.raw', '/home/data/MV0907/raw/os150/mv2009_130_79200.raw', '/home/data/MV0907/raw/os150/mv2009_131_00000.raw', '/home/data/MV0907/raw/os150/mv2009_131_07200.raw', '/home/data/MV0907/raw/os150/mv2009_131_14400.raw', '/home/data/MV0907/raw/os150/mv2009_131_21600.raw', '/home/data/MV0907/raw/os150/mv2009_131_28800.raw', '/home/data/MV0907/raw/os150/mv2009_131_36000.raw', '/home/data/MV0907/raw/os150/mv2009_131_43200.raw', '/home/data/MV0907/raw/os150/mv2009_131_50400.raw', '/home/data/MV0907/raw/os150/mv2009_131_57600.raw', '/home/data/MV0907/raw/os150/mv2009_131_64800.raw'] setup_info False skip_avg True smfile refsm.sm steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_matplotlib False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2009 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-05-12 18:33:08,533 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2009-05-12 18:33:08,533 DEBUG quick_run scanning files for time ranges... 2009-05-12 18:33:08,533 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb/scan 2009-05-12 18:33:08,533 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/scan 2009-05-12 18:33:08,534 DEBUG quick_setup running python command "method" 2009-05-12 18:33:08,534 DEBUG call_matlab --> clear all 2009-05-12 18:33:08,538 DEBUG call_matlab <-- >> 2009-05-12 18:33:08,538 DEBUG call_matlab --> close all 2009-05-12 18:33:08,578 DEBUG call_matlab <-- >> 2009-05-12 18:33:08,578 DEBUG call_matlab --> cd /home/data/MV0907/proc/os150nb/scan 2009-05-12 18:33:08,580 DEBUG call_matlab <-- >> 2009-05-12 18:33:08,580 DEBUG call_matlab --> scan_tmp 2009-05-12 18:33:09,122 DEBUG call_matlab <-- getting config files from "/home/data/MV0907/proc/os150nb/config" running "MV0907_cfg.m" running "MV0907_proc.m" writing scan info to a_mv.scn >> 2009-05-12 18:33:09,123 DEBUG quick_run writing time range from a_mv.scn to a_mv.tr 2009-05-12 18:33:09,123 DEBUG quick_run getting scan time range 2009-05-12 18:33:09,123 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:09,123 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/scan 2009-05-12 18:33:09,123 DEBUG quick_setup running python command "method" 2009-05-12 18:33:09,123 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:33:09,124 DEBUG quick_subs extracting time range 2009-05-12 18:33:09,125 DEBUG quick_subs start_end_time 2009/05/07 11:02:01 to 2009/05/12 18:29:53 2009-05-12 18:33:09,125 DEBUG quick_subs dd0: 126.459734 dd1: 131.770752 2009-05-12 18:33:09,125 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/MV0907/proc/os150nb 2009-05-12 18:33:09,125 DEBUG quick_adcp looking for database with adcpdb/a_mv*.blk 2009-05-12 18:33:09,126 DEBUG quick_adcp database found: listing blocks 2009-05-12 18:33:09,126 DEBUG quick_subs removing a_mvdir.blk 2009-05-12 18:33:09,126 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:33:09,126 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:33:09,127 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:33:09,138 DEBUG quick_subs database passes. 2009-05-12 18:33:09,138 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:33:09,139 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:09,139 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/adcpdb 2009-05-12 18:33:09,139 DEBUG quick_setup running python command "method" 2009-05-12 18:33:09,140 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:33:09,140 DEBUG quick_subs extracting time range 2009-05-12 18:33:09,140 DEBUG quick_subs start_end_time 2009/05/07 11:07:06 to 2009/05/12 17:59:21 2009-05-12 18:33:09,140 DEBUG quick_subs dd0: 126.463264 dd1: 131.749549 2009-05-12 18:33:09,140 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:33:09,141 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:09,141 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/adcpdb 2009-05-12 18:33:09,141 DEBUG quick_setup running python command "method" 2009-05-12 18:33:09,141 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:33:09,141 DEBUG quick_subs extracting time range 2009-05-12 18:33:09,141 DEBUG quick_subs start_end_time 2009/05/07 11:07:06 to 2009/05/12 17:59:21 2009-05-12 18:33:09,142 DEBUG quick_subs dd0: 126.463264 dd1: 131.749549 2009-05-12 18:33:09,142 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2009-05-12 18:33:09,142 DEBUG quick_adcp origdb_time_range is 2009/05/07 11:07:06 to 2009/05/12 17:59:21 2009-05-12 18:33:09,142 DEBUG quick_adcp (126.463264 to 131.749549) 2009-05-12 18:33:09,142 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2009-05-12 18:33:09,143 DEBUG quick_subs getting current (remaining after deletion) database times 2009-05-12 18:33:09,143 DEBUG quick_subs ['adcpdb/a_mv001.blk', 'adcpdb/a_mv006.blk', 'adcpdb/a_mv010.blk', 'adcpdb/a_mv005.blk', 'adcpdb/a_mv009.blk', 'adcpdb/a_mv011.blk', 'adcpdb/a_mvdir.blk', 'adcpdb/a_mv002.blk', 'adcpdb/a_mv004.blk', 'adcpdb/a_mv008.blk', 'adcpdb/a_mv007.blk', 'adcpdb/a_mv003.blk'] 2009-05-12 18:33:09,143 DEBUG quick_subs length is 12 2009-05-12 18:33:09,143 DEBUG quick_subs removing a_mvdir.blk 2009-05-12 18:33:09,143 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:33:09,143 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:33:09,144 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:33:09,153 DEBUG quick_subs database passes. 2009-05-12 18:33:09,153 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:33:09,154 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:09,154 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/adcpdb 2009-05-12 18:33:09,154 DEBUG quick_setup running python command "method" 2009-05-12 18:33:09,154 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:33:09,154 DEBUG quick_subs extracting time range 2009-05-12 18:33:09,155 DEBUG quick_subs start_end_time 2009/05/07 11:07:06 to 2009/05/12 17:59:21 2009-05-12 18:33:09,155 DEBUG quick_subs dd0: 126.463264 dd1: 131.749549 2009-05-12 18:33:09,156 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:33:09,156 DEBUG quick_subs reading time range 2009-05-12 18:33:09,156 DEBUG quick_subs start_end_time 2009/05/07 11:07:06 to 2009/05/12 17:59:21 2009-05-12 18:33:09,156 DEBUG quick_subs dd0: 126.463264 dd1: 131.749549 2009-05-12 18:33:09,157 INFO quick_subs Tue May 12 18:33:09 2009 2009-05-12 18:33:09,157 INFO quick_subs checking database time range by listblk 2009-05-12 18:33:09,157 DEBUG quick_subs removing a_mvdir.blk 2009-05-12 18:33:09,157 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:33:09,157 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:33:09,157 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:33:09,166 DEBUG quick_subs database passes. 2009-05-12 18:33:09,167 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:33:09,167 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:09,167 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/adcpdb 2009-05-12 18:33:09,167 DEBUG quick_setup running python command "method" 2009-05-12 18:33:09,167 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:33:09,167 DEBUG quick_subs extracting time range 2009-05-12 18:33:09,168 DEBUG quick_subs start_end_time 2009/05/07 11:07:06 to 2009/05/12 17:59:21 2009-05-12 18:33:09,168 DEBUG quick_subs dd0: 126.463264 dd1: 131.749549 2009-05-12 18:33:09,169 INFO quick_subs found line /* 0 n= 146 a_mv001.blk */ 2009/05/07 11:07:06 to 2009/05/07 23:17:42 2009-05-12 18:33:09,169 INFO quick_subs found line /* 1 n= 146 a_mv002.blk */ 2009/05/07 23:22:44 to 2009/05/08 11:33:15 2009-05-12 18:33:09,169 INFO quick_subs found line /* 2 n= 146 a_mv003.blk */ 2009/05/08 11:38:17 to 2009/05/08 23:48:39 2009-05-12 18:33:09,170 INFO quick_subs found line /* 3 n= 146 a_mv004.blk */ 2009/05/08 23:53:41 to 2009/05/09 12:04:09 2009-05-12 18:33:09,170 INFO quick_subs found line /* 4 n= 146 a_mv005.blk */ 2009/05/09 12:09:10 to 2009/05/10 00:16:54 2009-05-12 18:33:09,170 INFO quick_subs found line /* 5 n= 146 a_mv006.blk */ 2009/05/10 00:21:56 to 2009/05/10 12:32:21 2009-05-12 18:33:09,170 INFO quick_subs found line /* 6 n= 146 a_mv007.blk */ 2009/05/10 12:37:23 to 2009/05/11 00:47:18 2009-05-12 18:33:09,170 INFO quick_subs found line /* 7 n= 146 a_mv008.blk */ 2009/05/11 00:52:19 to 2009/05/11 13:01:43 2009-05-12 18:33:09,170 INFO quick_subs found line /* 8 n= 146 a_mv009.blk */ 2009/05/11 13:06:45 to 2009/05/12 01:16:46 2009-05-12 18:33:09,170 INFO quick_subs found line /* 9 n= 146 a_mv010.blk */ 2009/05/12 01:21:48 to 2009/05/12 13:32:17 2009-05-12 18:33:09,171 INFO quick_subs found line /* 10 n= 53 a_mv011.blk */ 2009/05/12 13:37:20 to 2009/05/12 17:59:21 2009-05-12 18:33:09,171 INFO quick_subs scan data start at 126.4597338 2009-05-12 18:33:09,171 INFO quick_subs scan time range: 2009/05/07 11:02:01 to 2009/05/12 18:29:53 2009-05-12 18:33:09,171 INFO quick_subs codasdb ends at 131.7495486 (2009/05/12 17:59:21) 2009-05-12 18:33:09,171 DEBUG quick_subs ... changed dirs, in /home/data/MV0907/proc/os150nb/adcpdb 2009-05-12 18:33:09,171 DEBUG quick_subs deleting these files: ['a_mv011.blk'] 2009-05-12 18:33:09,172 DEBUG quick_subs getting current (remaining after deletion) database times 2009-05-12 18:33:09,172 DEBUG quick_subs ['adcpdb/a_mv001.blk', 'adcpdb/a_mv006.blk', 'adcpdb/a_mv010.blk', 'adcpdb/a_mv005.blk', 'adcpdb/a_mv009.blk', 'adcpdb/a_mv002.blk', 'adcpdb/a_mv004.blk', 'adcpdb/a_mv008.blk', 'adcpdb/a_mv007.blk', 'adcpdb/a_mv003.blk'] 2009-05-12 18:33:09,172 DEBUG quick_subs length is 10 2009-05-12 18:33:09,172 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:33:09,172 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:33:09,172 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:33:09,181 DEBUG quick_subs database passes. 2009-05-12 18:33:09,182 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:33:09,182 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:09,182 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/adcpdb 2009-05-12 18:33:09,182 DEBUG quick_setup running python command "method" 2009-05-12 18:33:09,182 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:33:09,182 DEBUG quick_subs extracting time range 2009-05-12 18:33:09,183 DEBUG quick_subs start_end_time 2009/05/07 11:07:06 to 2009/05/12 13:32:17 2009-05-12 18:33:09,183 DEBUG quick_subs dd0: 126.463264 dd1: 131.564086 2009-05-12 18:33:09,183 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:33:09,183 DEBUG quick_subs reading time range 2009-05-12 18:33:09,183 DEBUG quick_subs start_end_time 2009/05/07 11:07:06 to 2009/05/12 13:32:17 2009-05-12 18:33:09,183 DEBUG quick_subs dd0: 126.463264 dd1: 131.564086 2009-05-12 18:33:09,183 DEBUG quick_subs codas database currently goes from 2009/05/07 11:07:06 to 2009/05/12 13:32:17 2009-05-12 18:33:09,184 DEBUG quick_subs (126.463264 to 131.564086) 2009-05-12 18:33:09,184 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009found existing adcpdb blocks: %s 010 2009-05-12 18:33:09,185 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 011 2009-05-12 18:33:09,185 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010'] 2009-05-12 18:33:09,185 DEBUG quick_subs checked: unloaded blkstrs: ['011'] 2009-05-12 18:33:09,185 DEBUG quick_subs first unloaded file is load/ens_blk011.cmd 2009-05-12 18:33:09,186 DEBUG quick_subs data goes from 2009/05/12 13:37:20 to 2009/05/12 18:29:53 2009-05-12 18:33:09,186 DEBUG quick_subs (131.567593 to 131.770752) 2009-05-12 18:33:09,186 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/MV0907/raw/os150/mv2009_126_39717.raw /home/data/MV0907/raw/os150/mv2009_126_43200.raw /home/data/MV0907/raw/os150/mv2009_126_50400.raw /home/data/MV0907/raw/os150/mv2009_126_57600.raw /home/data/MV0907/raw/os150/mv2009_126_64800.raw /home/data/MV0907/raw/os150/mv2009_126_72000.raw /home/data/MV0907/raw/os150/mv2009_126_79200.raw /home/data/MV0907/raw/os150/mv2009_127_00000.raw /home/data/MV0907/raw/os150/mv2009_127_07200.raw /home/data/MV0907/raw/os150/mv2009_127_14400.raw /home/data/MV0907/raw/os150/mv2009_127_21600.raw /home/data/MV0907/raw/os150/mv2009_127_28800.raw /home/data/MV0907/raw/os150/mv2009_127_36000.raw /home/data/MV0907/raw/os150/mv2009_127_43200.raw /home/data/MV0907/raw/os150/mv2009_127_50400.raw /home/data/MV0907/raw/os150/mv2009_127_57600.raw /home/data/MV0907/raw/os150/mv2009_127_64800.raw /home/data/MV0907/raw/os150/mv2009_127_72000.raw /home/data/MV0907/raw/os150/mv2009_127_79200.raw /home/data/MV0907/raw/os150/mv2009_128_00000.raw /home/data/MV0907/raw/os150/mv2009_128_07200.raw /home/data/MV0907/raw/os150/mv2009_128_14400.raw /home/data/MV0907/raw/os150/mv2009_128_21600.raw /home/data/MV0907/raw/os150/mv2009_128_28800.raw /home/data/MV0907/raw/os150/mv2009_128_36000.raw /home/data/MV0907/raw/os150/mv2009_128_43200.raw /home/data/MV0907/raw/os150/mv2009_128_50400.raw /home/data/MV0907/raw/os150/mv2009_128_57600.raw /home/data/MV0907/raw/os150/mv2009_128_64800.raw /home/data/MV0907/raw/os150/mv2009_128_72000.raw /home/data/MV0907/raw/os150/mv2009_128_79200.raw /home/data/MV0907/raw/os150/mv2009_129_00000.raw /home/data/MV0907/raw/os150/mv2009_129_07200.raw /home/data/MV0907/raw/os150/mv2009_129_14400.raw /home/data/MV0907/raw/os150/mv2009_129_21600.raw /home/data/MV0907/raw/os150/mv2009_129_28800.raw /home/data/MV0907/raw/os150/mv2009_129_36000.raw /home/data/MV0907/raw/os150/mv2009_129_43200.raw /home/data/MV0907/raw/os150/mv2009_129_50400.raw /home/data/MV0907/raw/os150/mv2009_129_57600.raw /home/data/MV0907/raw/os150/mv2009_129_64800.raw /home/data/MV0907/raw/os150/mv2009_129_72000.raw /home/data/MV0907/raw/os150/mv2009_129_79200.raw /home/data/MV0907/raw/os150/mv2009_130_00000.raw /home/data/MV0907/raw/os150/mv2009_130_07200.raw /home/data/MV0907/raw/os150/mv2009_130_14400.raw /home/data/MV0907/raw/os150/mv2009_130_21600.raw /home/data/MV0907/raw/os150/mv2009_130_28800.raw /home/data/MV0907/raw/os150/mv2009_130_36000.raw /home/data/MV0907/raw/os150/mv2009_130_43200.raw /home/data/MV0907/raw/os150/mv2009_130_50400.raw /home/data/MV0907/raw/os150/mv2009_130_57600.raw /home/data/MV0907/raw/os150/mv2009_130_64800.raw /home/data/MV0907/raw/os150/mv2009_130_72000.raw /home/data/MV0907/raw/os150/mv2009_130_79200.raw /home/data/MV0907/raw/os150/mv2009_131_00000.raw /home/data/MV0907/raw/os150/mv2009_131_07200.raw /home/data/MV0907/raw/os150/mv2009_131_14400.raw /home/data/MV0907/raw/os150/mv2009_131_21600.raw /home/data/MV0907/raw/os150/mv2009_131_28800.raw /home/data/MV0907/raw/os150/mv2009_131_36000.raw /home/data/MV0907/raw/os150/mv2009_131_43200.raw /home/data/MV0907/raw/os150/mv2009_131_50400.raw /home/data/MV0907/raw/os150/mv2009_131_57600.raw /home/data/MV0907/raw/os150/mv2009_131_64800.raw 2009-05-12 18:33:09,186 INFO quick_run Tue May 12 18:33:09 2009 2009-05-12 18:33:09,186 INFO quick_run about to load uhdas files 2009-05-12 18:33:09,186 INFO quick_run /home/data/MV0907/raw/os150/mv2009_126_39717.raw /home/data/MV0907/raw/os150/mv2009_126_43200.raw /home/data/MV0907/raw/os150/mv2009_126_50400.raw /home/data/MV0907/raw/os150/mv2009_126_57600.raw /home/data/MV0907/raw/os150/mv2009_126_64800.raw /home/data/MV0907/raw/os150/mv2009_126_72000.raw /home/data/MV0907/raw/os150/mv2009_126_79200.raw /home/data/MV0907/raw/os150/mv2009_127_00000.raw /home/data/MV0907/raw/os150/mv2009_127_07200.raw /home/data/MV0907/raw/os150/mv2009_127_14400.raw /home/data/MV0907/raw/os150/mv2009_127_21600.raw /home/data/MV0907/raw/os150/mv2009_127_28800.raw /home/data/MV0907/raw/os150/mv2009_127_36000.raw /home/data/MV0907/raw/os150/mv2009_127_43200.raw /home/data/MV0907/raw/os150/mv2009_127_50400.raw /home/data/MV0907/raw/os150/mv2009_127_57600.raw /home/data/MV0907/raw/os150/mv2009_127_64800.raw /home/data/MV0907/raw/os150/mv2009_127_72000.raw /home/data/MV0907/raw/os150/mv2009_127_79200.raw /home/data/MV0907/raw/os150/mv2009_128_00000.raw /home/data/MV0907/raw/os150/mv2009_128_07200.raw /home/data/MV0907/raw/os150/mv2009_128_14400.raw /home/data/MV0907/raw/os150/mv2009_128_21600.raw /home/data/MV0907/raw/os150/mv2009_128_28800.raw /home/data/MV0907/raw/os150/mv2009_128_36000.raw /home/data/MV0907/raw/os150/mv2009_128_43200.raw /home/data/MV0907/raw/os150/mv2009_128_50400.raw /home/data/MV0907/raw/os150/mv2009_128_57600.raw /home/data/MV0907/raw/os150/mv2009_128_64800.raw /home/data/MV0907/raw/os150/mv2009_128_72000.raw /home/data/MV0907/raw/os150/mv2009_128_79200.raw /home/data/MV0907/raw/os150/mv2009_129_00000.raw /home/data/MV0907/raw/os150/mv2009_129_07200.raw /home/data/MV0907/raw/os150/mv2009_129_14400.raw /home/data/MV0907/raw/os150/mv2009_129_21600.raw /home/data/MV0907/raw/os150/mv2009_129_28800.raw /home/data/MV0907/raw/os150/mv2009_129_36000.raw /home/data/MV0907/raw/os150/mv2009_129_43200.raw /home/data/MV0907/raw/os150/mv2009_129_50400.raw /home/data/MV0907/raw/os150/mv2009_129_57600.raw /home/data/MV0907/raw/os150/mv2009_129_64800.raw /home/data/MV0907/raw/os150/mv2009_129_72000.raw /home/data/MV0907/raw/os150/mv2009_129_79200.raw /home/data/MV0907/raw/os150/mv2009_130_00000.raw /home/data/MV0907/raw/os150/mv2009_130_07200.raw /home/data/MV0907/raw/os150/mv2009_130_14400.raw /home/data/MV0907/raw/os150/mv2009_130_21600.raw /home/data/MV0907/raw/os150/mv2009_130_28800.raw /home/data/MV0907/raw/os150/mv2009_130_36000.raw /home/data/MV0907/raw/os150/mv2009_130_43200.raw /home/data/MV0907/raw/os150/mv2009_130_50400.raw /home/data/MV0907/raw/os150/mv2009_130_57600.raw /home/data/MV0907/raw/os150/mv2009_130_64800.raw /home/data/MV0907/raw/os150/mv2009_130_72000.raw /home/data/MV0907/raw/os150/mv2009_130_79200.raw /home/data/MV0907/raw/os150/mv2009_131_00000.raw /home/data/MV0907/raw/os150/mv2009_131_07200.raw /home/data/MV0907/raw/os150/mv2009_131_14400.raw /home/data/MV0907/raw/os150/mv2009_131_21600.raw /home/data/MV0907/raw/os150/mv2009_131_28800.raw /home/data/MV0907/raw/os150/mv2009_131_36000.raw /home/data/MV0907/raw/os150/mv2009_131_43200.raw /home/data/MV0907/raw/os150/mv2009_131_50400.raw /home/data/MV0907/raw/os150/mv2009_131_57600.raw /home/data/MV0907/raw/os150/mv2009_131_64800.raw 2009-05-12 18:33:09,186 DEBUG quick_setup load/ldcodas.tmp exists 2009-05-12 18:33:09,186 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:09,187 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/load 2009-05-12 18:33:09,187 DEBUG quick_setup running python command "method" 2009-05-12 18:33:09,187 DEBUG quick_subs in /home/data/MV0907/proc/os150nb/load 2009-05-12 18:33:09,187 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010'] 2009-05-12 18:33:09,187 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011'] 2009-05-12 18:33:09,188 DEBUG quick_subs starttime is 2009/05/12 13:37:20 2009-05-12 18:33:09,188 DEBUG quick_subs RESETTING thisload_time_range 2009-05-12 18:33:09,188 DEBUG quick_subs time range of data to be loaded: 2009/05/12 13:37:20 to 2009/05/12 18:29:53 2009-05-12 18:33:09,188 DEBUG quick_subs data startdd 131.567593 data enddd 131.770752 2009-05-12 18:33:09,188 DEBUG quick_subs about to load from these cmd files ['ens_blk011.cmd'] 2009-05-12 18:33:09,188 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_mv DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2009 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk011.cmd 2009-05-12 18:33:09,189 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2009-05-12 18:33:09,204 DEBUG quick_subs removing a_mvdir.blk 2009-05-12 18:33:09,205 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:33:09,205 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:33:09,205 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:33:09,213 DEBUG quick_subs database passes. 2009-05-12 18:33:09,213 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:33:09,213 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:09,213 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/adcpdb 2009-05-12 18:33:09,213 DEBUG quick_setup running python command "method" 2009-05-12 18:33:09,214 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:33:09,214 DEBUG quick_subs extracting time range 2009-05-12 18:33:09,214 DEBUG quick_subs start_end_time 2009/05/07 11:07:06 to 2009/05/12 18:29:35 2009-05-12 18:33:09,214 DEBUG quick_subs dd0: 126.463264 dd1: 131.770544 2009-05-12 18:33:09,214 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:33:09,214 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:09,215 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/adcpdb 2009-05-12 18:33:09,215 DEBUG quick_setup running python command "method" 2009-05-12 18:33:09,215 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:33:09,215 DEBUG quick_subs extracting time range 2009-05-12 18:33:09,215 DEBUG quick_subs start_end_time 2009/05/07 11:07:06 to 2009/05/12 18:29:35 2009-05-12 18:33:09,215 DEBUG quick_subs dd0: 126.463264 dd1: 131.770544 2009-05-12 18:33:09,215 DEBUG quick_adcp loaded_time_range is 2009/05/07 11:07:06 to 2009/05/12 18:29:35 2009-05-12 18:33:09,216 DEBUG quick_adcp (126.463264 to 131.770544) 2009-05-12 18:33:09,216 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:09,216 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/adcpdb 2009-05-12 18:33:09,216 DEBUG quick_setup running python command "method" 2009-05-12 18:33:09,216 DEBUG quick_subs dbname: a_mv output: a_mv.cnh time_ranges: all 2009-05-12 18:33:09,216 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2009-05-12 18:33:09,240 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2009-05-12 18:33:09,240 DEBUG quick_run executing commands from /home/data/MV0907/proc/os150nb/edit 2009-05-12 18:33:09,240 DEBUG quick_run setup.m exists. not replacing 2009-05-12 18:33:09,240 DEBUG quick_run asetup.m exists. not replacing 2009-05-12 18:33:09,240 DEBUG quick_run aflagit_setup.m exists. not replacing 2009-05-12 18:33:09,241 DEBUG quick_run ------------ step 4: run setflags ------------- 2009-05-12 18:33:09,241 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:09,241 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/edit 2009-05-12 18:33:09,241 DEBUG quick_setup running python command "method" 2009-05-12 18:33:09,241 DEBUG quick_subs dbname: ../adcpdb/a_mv pg_min: 50 set_range_bit time_ranges: all 2009-05-12 18:33:09,241 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-05-12 18:33:09,266 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2009-05-12 18:33:09,267 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:09,267 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/nav 2009-05-12 18:33:09,267 DEBUG quick_setup running python command "method" 2009-05-12 18:33:09,269 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2009-05-12 18:33:09,269 DEBUG quick_run hcorr_inst is ashtech 2009-05-12 18:33:09,269 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2009-05-12 18:33:09,269 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:09,269 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/cal/rotate 2009-05-12 18:33:09,270 DEBUG quick_setup running python command "method" 2009-05-12 18:33:09,270 DEBUG quick_subs dbname: ../../adcpdb/a_mv output: scn.hdg step_size= 1 year_base= 2009 time_ranges: all 2009-05-12 18:33:09,270 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2009-05-12 18:33:09,287 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:09,287 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/cal/rotate 2009-05-12 18:33:09,288 DEBUG quick_setup running python command "method" 2009-05-12 18:33:09,474 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') hcorfile = 'ens_hcorr.asc'; proc_yearbase = 2009; cruiseid = 'MV0907'; if exist(hcorfile) plot_hcorstats('comment', cruiseid,... 'proc_yearbase', proc_yearbase,... 'plot_ddrange', 1,... 'plottype','fancy',... 'hcorfile', hcorfile,... 'gps_attname', 'ashtech',... 'cruiseid', cruiseid,... 'outfilebase', 'hcorr'); end 2009-05-12 18:33:11,083 DEBUG quick_run ------------ step 7: rotate ------------- 2009-05-12 18:33:11,083 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:11,083 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/cal/rotate 2009-05-12 18:33:11,083 DEBUG quick_setup running python command "method" 2009-05-12 18:33:11,099 DEBUG quick_subs last rotated time from log file: 2009/05/12 18:02:40 2009-05-12 18:33:11,099 DEBUG quick_subs time range of currently loaded data: 2009/05/07 11:07:06 to 2009/05/12 18:29:35 2009-05-12 18:33:11,099 DEBUG quick_subs (126.463264 to 131.770544) 2009-05-12 18:33:11,100 DEBUG quick_setup cal/rotate/rotate.tmp exists 2009-05-12 18:33:11,100 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:11,100 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/cal/rotate 2009-05-12 18:33:11,100 DEBUG quick_setup running python command "method" 2009-05-12 18:33:11,100 DEBUG quick_subs DB_NAME: ../../adcpdb/a_mv LOG_FILE: rotate.log TIME_RANGE: 2009/05/12 13:37:20 to 2009/05/12 18:29:53 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2009 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2009-05-12 18:33:11,100 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2009-05-12 18:33:11,106 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-05-12 18:33:11,106 DEBUG quick_setup nav/as_nav.tmp exists 2009-05-12 18:33:11,107 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:11,107 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/nav 2009-05-12 18:33:11,107 DEBUG quick_setup running python command "method" 2009-05-12 18:33:11,107 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/05/07 11:07:06 to 2009/05/12 18:29:35 /* the whole time range */ 2009-05-12 18:33:11,107 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-05-12 18:33:11,142 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-05-12 18:33:11,142 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:11,143 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/nav 2009-05-12 18:33:11,143 DEBUG quick_setup running python command "method" 2009-05-12 18:33:11,143 DEBUG quick_subs fix_file_type: simple reference_file: a_mv.nav fix_file: a_mv.gps output: a_mv.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-05-12 18:33:11,143 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-05-12 18:33:11,169 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-05-12 18:33:11,170 DEBUG quick_setup nav/smoothr.tmp exists 2009-05-12 18:33:11,170 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:11,170 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/nav 2009-05-12 18:33:11,170 DEBUG quick_setup running python command "method" 2009-05-12 18:33:11,170 DEBUG quick_subs reference_file: a_mv.nav refabs_output: a_mv.ref output: a_mv.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-05-12 18:33:11,170 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-05-12 18:33:11,295 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:11,295 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/nav 2009-05-12 18:33:11,295 DEBUG quick_setup running python command "method" 2009-05-12 18:33:11,296 DEBUG call_matlab --> clear all 2009-05-12 18:33:11,326 DEBUG call_matlab <-- >> 2009-05-12 18:33:11,327 DEBUG call_matlab --> close all 2009-05-12 18:33:11,383 DEBUG call_matlab <-- >> 2009-05-12 18:33:11,383 DEBUG call_matlab --> cd /home/data/MV0907/proc/os150nb/nav 2009-05-12 18:33:11,385 DEBUG call_matlab <-- >> 2009-05-12 18:33:11,386 DEBUG call_matlab --> refsm 2009-05-12 18:33:11,935 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_mv opened Searching CODAS database ==> ../adcpdb/a_mv for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 1519 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 89 percent done... 99 percent done... >> 2009-05-12 18:33:11,935 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-05-12 18:33:11,935 DEBUG quick_setup nav/putnav.tmp exists 2009-05-12 18:33:11,936 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:11,936 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/nav 2009-05-12 18:33:11,936 DEBUG quick_setup running python command "method" 2009-05-12 18:33:11,936 DEBUG quick_subs dbname: ../adcpdb/a_mv position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-05-12 18:33:11,936 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-05-12 18:33:11,977 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-05-12 18:33:11,978 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:11,978 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/nav 2009-05-12 18:33:11,978 DEBUG quick_setup running python command "method" 2009-05-12 18:33:11,979 DEBUG quick_subs Created callrtmp.m 2009-05-12 18:33:11,979 DEBUG call_matlab --> clear all 2009-05-12 18:33:11,986 DEBUG call_matlab <-- >> 2009-05-12 18:33:11,986 DEBUG call_matlab --> close all 2009-05-12 18:33:12,024 DEBUG call_matlab <-- >> 2009-05-12 18:33:12,024 DEBUG call_matlab --> cd /home/data/MV0907/proc/os150nb/nav 2009-05-12 18:33:12,027 DEBUG call_matlab <-- >> 2009-05-12 18:33:12,027 DEBUG call_matlab --> callrtmp_tmp 2009-05-12 18:33:12,883 DEBUG call_matlab <-- cruise = MV0907 cruise = MV0907 cruise = MV0907 No data available. >> 2009-05-12 18:33:12,883 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2009-05-12 18:33:12,883 DEBUG quick_run find profile flags ------------ *** ------------- 2009-05-12 18:33:12,883 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:12,883 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/edit 2009-05-12 18:33:12,883 DEBUG quick_setup running python command "method" 2009-05-12 18:33:13,796 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2009-05-12 18:33:13,797 DEBUG quick_run starting in: /home/data/MV0907/proc/os150nb 2009-05-12 18:33:13,797 DEBUG quick_run executing commands from: edit 2009-05-12 18:33:13,799 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_mv abadprf_tmp.asc 2009-05-12 18:33:13,803 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_mv abadbin_tmp.asc 2009-05-12 18:33:13,810 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_mv 2009-05-12 18:33:13,814 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-05-12 18:33:13,840 DEBUG quick_run changing directories back to /home/data/MV0907/proc/os150nb 2009-05-12 18:33:13,841 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2009-05-12 18:33:13,841 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-05-12 18:33:13,841 DEBUG quick_setup nav/as_nav.tmp exists 2009-05-12 18:33:13,841 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:13,841 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/nav 2009-05-12 18:33:13,842 DEBUG quick_setup running python command "method" 2009-05-12 18:33:13,842 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/05/07 11:07:06 to 2009/05/12 18:29:35 /* the whole time range */ 2009-05-12 18:33:13,842 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-05-12 18:33:13,879 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-05-12 18:33:13,879 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:13,879 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/nav 2009-05-12 18:33:13,880 DEBUG quick_setup running python command "method" 2009-05-12 18:33:13,880 DEBUG quick_subs fix_file_type: simple reference_file: a_mv.nav fix_file: a_mv.gps output: a_mv.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-05-12 18:33:13,880 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-05-12 18:33:13,910 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-05-12 18:33:13,910 DEBUG quick_setup nav/smoothr.tmp exists 2009-05-12 18:33:13,910 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:13,910 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/nav 2009-05-12 18:33:13,910 DEBUG quick_setup running python command "method" 2009-05-12 18:33:13,911 DEBUG quick_subs reference_file: a_mv.nav refabs_output: a_mv.ref output: a_mv.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-05-12 18:33:13,911 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-05-12 18:33:14,127 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:14,128 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/nav 2009-05-12 18:33:14,128 DEBUG quick_setup running python command "method" 2009-05-12 18:33:14,128 DEBUG call_matlab --> clear all 2009-05-12 18:33:14,139 DEBUG call_matlab <-- >> 2009-05-12 18:33:14,139 DEBUG call_matlab --> close all 2009-05-12 18:33:14,180 DEBUG call_matlab <-- >> 2009-05-12 18:33:14,180 DEBUG call_matlab --> cd /home/data/MV0907/proc/os150nb/nav 2009-05-12 18:33:14,183 DEBUG call_matlab <-- >> 2009-05-12 18:33:14,183 DEBUG call_matlab --> refsm 2009-05-12 18:33:14,765 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_mv opened Searching CODAS database ==> ../adcpdb/a_mv for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 1519 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 89 percent done... 99 percent done... >> 2009-05-12 18:33:14,765 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-05-12 18:33:14,766 DEBUG quick_setup nav/putnav.tmp exists 2009-05-12 18:33:14,766 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:14,766 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/nav 2009-05-12 18:33:14,766 DEBUG quick_setup running python command "method" 2009-05-12 18:33:14,766 DEBUG quick_subs dbname: ../adcpdb/a_mv position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-05-12 18:33:14,766 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-05-12 18:33:14,814 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-05-12 18:33:14,814 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:14,814 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/nav 2009-05-12 18:33:14,814 DEBUG quick_setup running python command "method" 2009-05-12 18:33:14,815 DEBUG quick_subs Created callrtmp.m 2009-05-12 18:33:14,815 DEBUG call_matlab --> clear all 2009-05-12 18:33:14,822 DEBUG call_matlab <-- >> 2009-05-12 18:33:14,822 DEBUG call_matlab --> close all 2009-05-12 18:33:14,861 DEBUG call_matlab <-- >> 2009-05-12 18:33:14,861 DEBUG call_matlab --> cd /home/data/MV0907/proc/os150nb/nav 2009-05-12 18:33:14,863 DEBUG call_matlab <-- >> 2009-05-12 18:33:14,864 DEBUG call_matlab --> callrtmp_tmp 2009-05-12 18:33:15,719 DEBUG call_matlab <-- cruise = MV0907 cruise = MV0907 cruise = MV0907 No data available. >> 2009-05-12 18:33:15,719 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2009-05-12 18:33:15,719 DEBUG quick_setup edit/lst_temp.tmp exists 2009-05-12 18:33:15,719 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:15,719 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/edit 2009-05-12 18:33:15,719 DEBUG quick_setup running python command "method" 2009-05-12 18:33:15,720 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv.tem step_size= 1 year_base= 2009 time_ranges: all 2009-05-12 18:33:15,720 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2009-05-12 18:33:15,741 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:15,742 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/edit 2009-05-12 18:33:15,742 DEBUG quick_setup running python command "method" 2009-05-12 18:33:16,344 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2009-05-12 18:33:16,344 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2009-05-12 18:33:16,344 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:16,344 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/cal/botmtrk 2009-05-12 18:33:16,344 DEBUG quick_setup running python command "method" 2009-05-12 18:33:16,344 DEBUG quick_subs dbname: ../../adcpdb/a_mv output: a_mv.btm step_size= 1 year_base= 2009 time_ranges: 2009/05/07 11:07:06 to 2009/05/12 18:29:35 /* whole time range */ 2009-05-12 18:33:16,345 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2009-05-12 18:33:16,354 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2009-05-12 18:33:16,355 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:16,355 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/cal/botmtrk 2009-05-12 18:33:16,355 DEBUG quick_setup running python command "method" 2009-05-12 18:33:16,355 DEBUG quick_subs fix_file_type: simple reference_file: a_mv.btm fix_file: ../../nav/a_mv.gps output: a_mv.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 60 2009-05-12 18:33:16,355 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2009-05-12 18:33:16,360 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:16,360 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/cal/botmtrk 2009-05-12 18:33:16,360 DEBUG quick_setup running python command "method" 2009-05-12 18:33:16,361 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') [a, ph, gd_mask, d] = ... btcaluv('a_mv.ref','a_mv.btm',... 'ADCP MV0907 step size 1 ', 1); 2009-05-12 18:33:16,478 DEBUG quick_setup nav/as_nav.tmp exists 2009-05-12 18:33:16,478 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:16,478 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/nav 2009-05-12 18:33:16,478 DEBUG quick_setup running python command "method" 2009-05-12 18:33:16,479 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/05/07 11:07:06 to 2009/05/12 18:29:35 /* the whole time range */ 2009-05-12 18:33:16,479 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-05-12 18:33:16,516 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2009-05-12 18:33:16,516 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:16,517 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/cal/watertrk 2009-05-12 18:33:16,517 DEBUG quick_setup running python command "method" 2009-05-12 18:33:16,517 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_mv.gps reference_file: ../../nav/a_mv.nav output_file: a_mv_7.cal year_base= 2009 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2009-05-12 18:33:16,517 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2009-05-12 18:33:16,531 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:16,531 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/cal/watertrk 2009-05-12 18:33:16,531 DEBUG quick_setup running python command "method" 2009-05-12 18:33:16,531 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') adcpcal('a_mv_7.cal', 'ADCP MV0907 7ens') 2009-05-12 18:33:16,532 DEBUG call_matlab --> clear all 2009-05-12 18:33:16,536 DEBUG call_matlab <-- >> 2009-05-12 18:33:16,536 DEBUG call_matlab --> close all 2009-05-12 18:33:16,575 DEBUG call_matlab <-- >> 2009-05-12 18:33:16,575 DEBUG call_matlab --> cd /home/data/MV0907/proc/os150nb/cal/watertrk 2009-05-12 18:33:16,577 DEBUG call_matlab <-- >> 2009-05-12 18:33:16,577 DEBUG call_matlab --> calladcpcal_tmp 2009-05-12 18:33:17,366 DEBUG call_matlab <-- figure saved as cal1.ps figure saved as cal2.ps ans = 40 ans = j_ph: 11 j_amp: 10 j_t: 2 j_du: 5 j_dv: 6 j_dt: 9 j_mvar: 8 j_var: 7 calr: [23x11 double] igood: [14x1 double] >> 2009-05-12 18:33:17,366 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2009-05-12 18:33:17,366 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:17,366 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/vector 2009-05-12 18:33:17,367 DEBUG quick_setup running python command "method" 2009-05-12 18:33:17,367 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_mv.tmp 2009-05-12 18:33:17,372 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:17,372 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/vector 2009-05-12 18:33:17,372 DEBUG quick_setup running python command "method" 2009-05-12 18:33:17,373 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2009-05-12 18:33:17,415 DEBUG quick_asect done making vector matfiles 2009-05-12 18:33:17,415 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:17,415 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/contour 2009-05-12 18:33:17,415 DEBUG quick_setup running python command "method" 2009-05-12 18:33:17,416 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_mv.tmp 2009-05-12 18:33:17,422 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:17,422 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/contour 2009-05-12 18:33:17,422 DEBUG quick_setup running python command "method" 2009-05-12 18:33:17,422 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2009-05-12 18:33:17,477 DEBUG quick_setup starting in /home/data/MV0907/proc/os150nb 2009-05-12 18:33:17,477 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150nb/contour 2009-05-12 18:33:17,477 DEBUG quick_setup about to run getmat -rs -f allbins_ ../adcpdb/a_mv 2009-05-12 18:33:17,613 DEBUG quick_asect done running getmat with "allbins" 2009-05-12 18:33:17,614 INFO root copying NOFIG to /home/adcp/www/figures/os150nb_hcorr_plot.png 2009-05-12 18:33:17,614 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os150nb_hcorr_plot_thumb.png 2009-05-12 18:33:17,614 DEBUG root matfile is contour/contour_uv.mat 2009-05-12 18:33:17,616 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os150nb_cont_uv.mat 2009-05-12 18:33:17,616 DEBUG root matfile is vector/vector_uv.mat 2009-05-12 18:33:17,617 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os150nb_vect_uv.mat 2009-05-12 18:33:17,617 DEBUG root matfile is contour/contour_xy.mat 2009-05-12 18:33:17,617 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os150nb_cont_xy.mat 2009-05-12 18:33:17,617 DEBUG root matfile is vector/vector_xy.mat 2009-05-12 18:33:17,618 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os150nb_vect_xy.mat 2009-05-12 18:33:17,618 DEBUG root about to copy file edit/a_mv.tem to /home/adcp/www/data/os150nb_temp.asc 2009-05-12 18:33:17,618 INFO root copying edit/a_mv.tem to /home/adcp/www/data/os150nb_temp.asc 2009-05-12 18:33:17,618 INFO root Ending quick_adcp.py 2009-05-12 18:33:17,675 DEBUG quick_setup killed matlab engine