2009-05-12 18:32:51,907 DEBUG root about to write control file parameters to --yearbase 2009 --pingtype bb --cfgbase MV0907 --cruisename MV0907 --instclass os --instname os150 --dbname a_mv --datatype uhdas --datadir /home/data/MV0907/raw/os150 --cfgpath /home/data/MV0907/proc/os150bb/config --ens_len 300 --ping_headcorr --hcorr_inst ashtech --use_topo4edit ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --acc_heading_cutoff 0.020000 2009-05-12 18:32:51,913 DEBUG quick_adcp progdir = /home/currents/programs 2009-05-12 18:32:51,913 DEBUG quick_adcp binos = lnx 2009-05-12 18:32:51,914 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2009-05-12 18:32:51,914 DEBUG quick_setup yearbase is 2009, proc_yearbase is 2009 2009-05-12 18:32:51,914 DEBUG quick_setup processing data logged with uhdas: 2009-05-12 18:32:51,915 DEBUG quick_setup datatype is uhdas 2009-05-12 18:32:51,915 DEBUG quick_setup pingtype is bb 2009-05-12 18:32:51,915 DEBUG quick_setup instclass is os 2009-05-12 18:32:51,915 DEBUG quick_setup no post-processing heading correction will be used 2009-05-12 18:32:51,915 DEBUG quick_setup transducer depth set in *_cfg.m file 2009-05-12 18:32:51,916 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os150'; pingtype = 'bb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'MV0907',... 'cfgpath' , '/home/data/MV0907/proc/os150bb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2009-05-12 18:32:51,916 DEBUG quick_setup ------- starting Matlab engine ------- 2009-05-12 18:32:51,916 DEBUG quick_setup ['/home/currents/programs/matlab'] 2009-05-12 18:32:51,920 DEBUG call_matlab starting to wait for initial prompt 2009-05-12 18:32:52,931 DEBUG call_matlab received initial prompt 2009-05-12 18:32:53,082 DEBUG quick_adcp cwd is /home/data/MV0907/proc/os150bb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-05-12 18:32:53,082 DEBUG quick_adcp original fix file is a_mv.gps 2009-05-12 18:32:53,083 DEBUG quick_adcp smoothed nav file is refsm.sm 2009-05-12 18:32:53,083 DEBUG quick_asect extracting matlab files for os150, bb pings 2009-05-12 18:32:53,234 DEBUG quick_subs found 65 files using wildcard expansion from "/home/data/MV0907/raw/os150/*.raw" 2009-05-12 18:32:53,234 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/MV0907/raw/os150/mv2009_126_39717.raw /home/data/MV0907/raw/os150/mv2009_126_43200.raw /home/data/MV0907/raw/os150/mv2009_126_50400.raw /home/data/MV0907/raw/os150/mv2009_126_57600.raw /home/data/MV0907/raw/os150/mv2009_126_64800.raw /home/data/MV0907/raw/os150/mv2009_126_72000.raw /home/data/MV0907/raw/os150/mv2009_126_79200.raw /home/data/MV0907/raw/os150/mv2009_127_00000.raw /home/data/MV0907/raw/os150/mv2009_127_07200.raw /home/data/MV0907/raw/os150/mv2009_127_14400.raw /home/data/MV0907/raw/os150/mv2009_127_21600.raw /home/data/MV0907/raw/os150/mv2009_127_28800.raw /home/data/MV0907/raw/os150/mv2009_127_36000.raw /home/data/MV0907/raw/os150/mv2009_127_43200.raw /home/data/MV0907/raw/os150/mv2009_127_50400.raw /home/data/MV0907/raw/os150/mv2009_127_57600.raw /home/data/MV0907/raw/os150/mv2009_127_64800.raw /home/data/MV0907/raw/os150/mv2009_127_72000.raw /home/data/MV0907/raw/os150/mv2009_127_79200.raw /home/data/MV0907/raw/os150/mv2009_128_00000.raw /home/data/MV0907/raw/os150/mv2009_128_07200.raw /home/data/MV0907/raw/os150/mv2009_128_14400.raw /home/data/MV0907/raw/os150/mv2009_128_21600.raw /home/data/MV0907/raw/os150/mv2009_128_28800.raw /home/data/MV0907/raw/os150/mv2009_128_36000.raw /home/data/MV0907/raw/os150/mv2009_128_43200.raw /home/data/MV0907/raw/os150/mv2009_128_50400.raw /home/data/MV0907/raw/os150/mv2009_128_57600.raw /home/data/MV0907/raw/os150/mv2009_128_64800.raw /home/data/MV0907/raw/os150/mv2009_128_72000.raw /home/data/MV0907/raw/os150/mv2009_128_79200.raw /home/data/MV0907/raw/os150/mv2009_129_00000.raw /home/data/MV0907/raw/os150/mv2009_129_07200.raw /home/data/MV0907/raw/os150/mv2009_129_14400.raw /home/data/MV0907/raw/os150/mv2009_129_21600.raw /home/data/MV0907/raw/os150/mv2009_129_28800.raw /home/data/MV0907/raw/os150/mv2009_129_36000.raw /home/data/MV0907/raw/os150/mv2009_129_43200.raw /home/data/MV0907/raw/os150/mv2009_129_50400.raw /home/data/MV0907/raw/os150/mv2009_129_57600.raw /home/data/MV0907/raw/os150/mv2009_129_64800.raw /home/data/MV0907/raw/os150/mv2009_129_72000.raw /home/data/MV0907/raw/os150/mv2009_129_79200.raw /home/data/MV0907/raw/os150/mv2009_130_00000.raw /home/data/MV0907/raw/os150/mv2009_130_07200.raw /home/data/MV0907/raw/os150/mv2009_130_14400.raw /home/data/MV0907/raw/os150/mv2009_130_21600.raw /home/data/MV0907/raw/os150/mv2009_130_28800.raw /home/data/MV0907/raw/os150/mv2009_130_36000.raw /home/data/MV0907/raw/os150/mv2009_130_43200.raw /home/data/MV0907/raw/os150/mv2009_130_50400.raw /home/data/MV0907/raw/os150/mv2009_130_57600.raw /home/data/MV0907/raw/os150/mv2009_130_64800.raw /home/data/MV0907/raw/os150/mv2009_130_72000.raw /home/data/MV0907/raw/os150/mv2009_130_79200.raw /home/data/MV0907/raw/os150/mv2009_131_00000.raw /home/data/MV0907/raw/os150/mv2009_131_07200.raw /home/data/MV0907/raw/os150/mv2009_131_14400.raw /home/data/MV0907/raw/os150/mv2009_131_21600.raw /home/data/MV0907/raw/os150/mv2009_131_28800.raw /home/data/MV0907/raw/os150/mv2009_131_36000.raw /home/data/MV0907/raw/os150/mv2009_131_43200.raw /home/data/MV0907/raw/os150/mv2009_131_50400.raw /home/data/MV0907/raw/os150/mv2009_131_57600.raw /home/data/MV0907/raw/os150/mv2009_131_64800.raw 2009-05-12 18:32:53,234 DEBUG quick_adcp LASTFILES invoked. using only 65 files from end of filelist 2009-05-12 18:32:53,234 DEBUG quick_adcp using delblks = 1 2009-05-12 18:32:53,234 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/MV0907/raw/os150/mv2009_126_39717.raw /home/data/MV0907/raw/os150/mv2009_126_43200.raw /home/data/MV0907/raw/os150/mv2009_126_50400.raw /home/data/MV0907/raw/os150/mv2009_126_57600.raw /home/data/MV0907/raw/os150/mv2009_126_64800.raw /home/data/MV0907/raw/os150/mv2009_126_72000.raw /home/data/MV0907/raw/os150/mv2009_126_79200.raw /home/data/MV0907/raw/os150/mv2009_127_00000.raw /home/data/MV0907/raw/os150/mv2009_127_07200.raw /home/data/MV0907/raw/os150/mv2009_127_14400.raw /home/data/MV0907/raw/os150/mv2009_127_21600.raw /home/data/MV0907/raw/os150/mv2009_127_28800.raw /home/data/MV0907/raw/os150/mv2009_127_36000.raw /home/data/MV0907/raw/os150/mv2009_127_43200.raw /home/data/MV0907/raw/os150/mv2009_127_50400.raw /home/data/MV0907/raw/os150/mv2009_127_57600.raw /home/data/MV0907/raw/os150/mv2009_127_64800.raw /home/data/MV0907/raw/os150/mv2009_127_72000.raw /home/data/MV0907/raw/os150/mv2009_127_79200.raw /home/data/MV0907/raw/os150/mv2009_128_00000.raw /home/data/MV0907/raw/os150/mv2009_128_07200.raw /home/data/MV0907/raw/os150/mv2009_128_14400.raw /home/data/MV0907/raw/os150/mv2009_128_21600.raw /home/data/MV0907/raw/os150/mv2009_128_28800.raw /home/data/MV0907/raw/os150/mv2009_128_36000.raw /home/data/MV0907/raw/os150/mv2009_128_43200.raw /home/data/MV0907/raw/os150/mv2009_128_50400.raw /home/data/MV0907/raw/os150/mv2009_128_57600.raw /home/data/MV0907/raw/os150/mv2009_128_64800.raw /home/data/MV0907/raw/os150/mv2009_128_72000.raw /home/data/MV0907/raw/os150/mv2009_128_79200.raw /home/data/MV0907/raw/os150/mv2009_129_00000.raw /home/data/MV0907/raw/os150/mv2009_129_07200.raw /home/data/MV0907/raw/os150/mv2009_129_14400.raw /home/data/MV0907/raw/os150/mv2009_129_21600.raw /home/data/MV0907/raw/os150/mv2009_129_28800.raw /home/data/MV0907/raw/os150/mv2009_129_36000.raw /home/data/MV0907/raw/os150/mv2009_129_43200.raw /home/data/MV0907/raw/os150/mv2009_129_50400.raw /home/data/MV0907/raw/os150/mv2009_129_57600.raw /home/data/MV0907/raw/os150/mv2009_129_64800.raw /home/data/MV0907/raw/os150/mv2009_129_72000.raw /home/data/MV0907/raw/os150/mv2009_129_79200.raw /home/data/MV0907/raw/os150/mv2009_130_00000.raw /home/data/MV0907/raw/os150/mv2009_130_07200.raw /home/data/MV0907/raw/os150/mv2009_130_14400.raw /home/data/MV0907/raw/os150/mv2009_130_21600.raw /home/data/MV0907/raw/os150/mv2009_130_28800.raw /home/data/MV0907/raw/os150/mv2009_130_36000.raw /home/data/MV0907/raw/os150/mv2009_130_43200.raw /home/data/MV0907/raw/os150/mv2009_130_50400.raw /home/data/MV0907/raw/os150/mv2009_130_57600.raw /home/data/MV0907/raw/os150/mv2009_130_64800.raw /home/data/MV0907/raw/os150/mv2009_130_72000.raw /home/data/MV0907/raw/os150/mv2009_130_79200.raw /home/data/MV0907/raw/os150/mv2009_131_00000.raw /home/data/MV0907/raw/os150/mv2009_131_07200.raw /home/data/MV0907/raw/os150/mv2009_131_14400.raw /home/data/MV0907/raw/os150/mv2009_131_21600.raw /home/data/MV0907/raw/os150/mv2009_131_28800.raw /home/data/MV0907/raw/os150/mv2009_131_36000.raw /home/data/MV0907/raw/os150/mv2009_131_43200.raw /home/data/MV0907/raw/os150/mv2009_131_50400.raw /home/data/MV0907/raw/os150/mv2009_131_57600.raw /home/data/MV0907/raw/os150/mv2009_131_64800.raw 2009-05-12 18:32:53,235 DEBUG quick_adcp Tue May 12 18:32:53 2009 running quick_adcp.py as follows: --cntfile /home/data/MV0907/proc/os150bb/os150bb_qpy.cnt ----- adcpsect variables ------ afilebase a_mv cbasename contour dbname a_mv dbpath ../adcpdb deeper_boundaries [50, 75, 100, 125, 150, 175, 200, 225, 250, 275, 300] firstdepth 13 gridnum 100 increment 4 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2009 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.02 adjust_time 1 afilebase a_mv allow_reload True auto True bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase MV0907 cfgpath /home/data/MV0907/proc/os150bb/config cntfile /home/data/MV0907/proc/os150bb/os150bb_qpy.cnt commands None cruisename MV0907 data_def vmadcp.def datadir /home/data/MV0907/raw/os150 datafile_glob *.raw datatype uhdas dbname a_mv dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False filelist ['/home/data/MV0907/raw/os150/mv2009_126_39717.raw', '/home/data/MV0907/raw/os150/mv2009_126_43200.raw', '/home/data/MV0907/raw/os150/mv2009_126_50400.raw', '/home/data/MV0907/raw/os150/mv2009_126_57600.raw', '/home/data/MV0907/raw/os150/mv2009_126_64800.raw', '/home/data/MV0907/raw/os150/mv2009_126_72000.raw', '/home/data/MV0907/raw/os150/mv2009_126_79200.raw', '/home/data/MV0907/raw/os150/mv2009_127_00000.raw', '/home/data/MV0907/raw/os150/mv2009_127_07200.raw', '/home/data/MV0907/raw/os150/mv2009_127_14400.raw', '/home/data/MV0907/raw/os150/mv2009_127_21600.raw', '/home/data/MV0907/raw/os150/mv2009_127_28800.raw', '/home/data/MV0907/raw/os150/mv2009_127_36000.raw', '/home/data/MV0907/raw/os150/mv2009_127_43200.raw', '/home/data/MV0907/raw/os150/mv2009_127_50400.raw', '/home/data/MV0907/raw/os150/mv2009_127_57600.raw', '/home/data/MV0907/raw/os150/mv2009_127_64800.raw', '/home/data/MV0907/raw/os150/mv2009_127_72000.raw', '/home/data/MV0907/raw/os150/mv2009_127_79200.raw', '/home/data/MV0907/raw/os150/mv2009_128_00000.raw', '/home/data/MV0907/raw/os150/mv2009_128_07200.raw', '/home/data/MV0907/raw/os150/mv2009_128_14400.raw', '/home/data/MV0907/raw/os150/mv2009_128_21600.raw', '/home/data/MV0907/raw/os150/mv2009_128_28800.raw', '/home/data/MV0907/raw/os150/mv2009_128_36000.raw', '/home/data/MV0907/raw/os150/mv2009_128_43200.raw', '/home/data/MV0907/raw/os150/mv2009_128_50400.raw', '/home/data/MV0907/raw/os150/mv2009_128_57600.raw', '/home/data/MV0907/raw/os150/mv2009_128_64800.raw', '/home/data/MV0907/raw/os150/mv2009_128_72000.raw', '/home/data/MV0907/raw/os150/mv2009_128_79200.raw', '/home/data/MV0907/raw/os150/mv2009_129_00000.raw', '/home/data/MV0907/raw/os150/mv2009_129_07200.raw', '/home/data/MV0907/raw/os150/mv2009_129_14400.raw', '/home/data/MV0907/raw/os150/mv2009_129_21600.raw', '/home/data/MV0907/raw/os150/mv2009_129_28800.raw', '/home/data/MV0907/raw/os150/mv2009_129_36000.raw', '/home/data/MV0907/raw/os150/mv2009_129_43200.raw', '/home/data/MV0907/raw/os150/mv2009_129_50400.raw', '/home/data/MV0907/raw/os150/mv2009_129_57600.raw', '/home/data/MV0907/raw/os150/mv2009_129_64800.raw', '/home/data/MV0907/raw/os150/mv2009_129_72000.raw', '/home/data/MV0907/raw/os150/mv2009_129_79200.raw', '/home/data/MV0907/raw/os150/mv2009_130_00000.raw', '/home/data/MV0907/raw/os150/mv2009_130_07200.raw', '/home/data/MV0907/raw/os150/mv2009_130_14400.raw', '/home/data/MV0907/raw/os150/mv2009_130_21600.raw', '/home/data/MV0907/raw/os150/mv2009_130_28800.raw', '/home/data/MV0907/raw/os150/mv2009_130_36000.raw', '/home/data/MV0907/raw/os150/mv2009_130_43200.raw', '/home/data/MV0907/raw/os150/mv2009_130_50400.raw', '/home/data/MV0907/raw/os150/mv2009_130_57600.raw', '/home/data/MV0907/raw/os150/mv2009_130_64800.raw', '/home/data/MV0907/raw/os150/mv2009_130_72000.raw', '/home/data/MV0907/raw/os150/mv2009_130_79200.raw', '/home/data/MV0907/raw/os150/mv2009_131_00000.raw', '/home/data/MV0907/raw/os150/mv2009_131_07200.raw', '/home/data/MV0907/raw/os150/mv2009_131_14400.raw', '/home/data/MV0907/raw/os150/mv2009_131_21600.raw', '/home/data/MV0907/raw/os150/mv2009_131_28800.raw', '/home/data/MV0907/raw/os150/mv2009_131_36000.raw', '/home/data/MV0907/raw/os150/mv2009_131_43200.raw', '/home/data/MV0907/raw/os150/mv2009_131_50400.raw', '/home/data/MV0907/raw/os150/mv2009_131_57600.raw', '/home/data/MV0907/raw/os150/mv2009_131_64800.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 13 fixfile a_mv.gps hcorr_inst ashtech head_func None help False hidedisplay True howto_lta False howto_ping False instclass os instname os150 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os150'; pingtype = 'bb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'MV0907',... 'cfgpath' , '/home/data/MV0907/proc/os150bb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_mv.gps overview False pgmin 50 ping_headcorr True pingtype bb post_headcorr False proc_yearbase 2009 procdir os150bb progdir /home/currents/programs quiet True rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/MV0907/raw/os150/mv2009_126_39717.raw', '/home/data/MV0907/raw/os150/mv2009_126_43200.raw', '/home/data/MV0907/raw/os150/mv2009_126_50400.raw', '/home/data/MV0907/raw/os150/mv2009_126_57600.raw', '/home/data/MV0907/raw/os150/mv2009_126_64800.raw', '/home/data/MV0907/raw/os150/mv2009_126_72000.raw', '/home/data/MV0907/raw/os150/mv2009_126_79200.raw', '/home/data/MV0907/raw/os150/mv2009_127_00000.raw', '/home/data/MV0907/raw/os150/mv2009_127_07200.raw', '/home/data/MV0907/raw/os150/mv2009_127_14400.raw', '/home/data/MV0907/raw/os150/mv2009_127_21600.raw', '/home/data/MV0907/raw/os150/mv2009_127_28800.raw', '/home/data/MV0907/raw/os150/mv2009_127_36000.raw', '/home/data/MV0907/raw/os150/mv2009_127_43200.raw', '/home/data/MV0907/raw/os150/mv2009_127_50400.raw', '/home/data/MV0907/raw/os150/mv2009_127_57600.raw', '/home/data/MV0907/raw/os150/mv2009_127_64800.raw', '/home/data/MV0907/raw/os150/mv2009_127_72000.raw', '/home/data/MV0907/raw/os150/mv2009_127_79200.raw', '/home/data/MV0907/raw/os150/mv2009_128_00000.raw', '/home/data/MV0907/raw/os150/mv2009_128_07200.raw', '/home/data/MV0907/raw/os150/mv2009_128_14400.raw', '/home/data/MV0907/raw/os150/mv2009_128_21600.raw', '/home/data/MV0907/raw/os150/mv2009_128_28800.raw', '/home/data/MV0907/raw/os150/mv2009_128_36000.raw', '/home/data/MV0907/raw/os150/mv2009_128_43200.raw', '/home/data/MV0907/raw/os150/mv2009_128_50400.raw', '/home/data/MV0907/raw/os150/mv2009_128_57600.raw', '/home/data/MV0907/raw/os150/mv2009_128_64800.raw', '/home/data/MV0907/raw/os150/mv2009_128_72000.raw', '/home/data/MV0907/raw/os150/mv2009_128_79200.raw', '/home/data/MV0907/raw/os150/mv2009_129_00000.raw', '/home/data/MV0907/raw/os150/mv2009_129_07200.raw', '/home/data/MV0907/raw/os150/mv2009_129_14400.raw', '/home/data/MV0907/raw/os150/mv2009_129_21600.raw', '/home/data/MV0907/raw/os150/mv2009_129_28800.raw', '/home/data/MV0907/raw/os150/mv2009_129_36000.raw', '/home/data/MV0907/raw/os150/mv2009_129_43200.raw', '/home/data/MV0907/raw/os150/mv2009_129_50400.raw', '/home/data/MV0907/raw/os150/mv2009_129_57600.raw', '/home/data/MV0907/raw/os150/mv2009_129_64800.raw', '/home/data/MV0907/raw/os150/mv2009_129_72000.raw', '/home/data/MV0907/raw/os150/mv2009_129_79200.raw', '/home/data/MV0907/raw/os150/mv2009_130_00000.raw', '/home/data/MV0907/raw/os150/mv2009_130_07200.raw', '/home/data/MV0907/raw/os150/mv2009_130_14400.raw', '/home/data/MV0907/raw/os150/mv2009_130_21600.raw', '/home/data/MV0907/raw/os150/mv2009_130_28800.raw', '/home/data/MV0907/raw/os150/mv2009_130_36000.raw', '/home/data/MV0907/raw/os150/mv2009_130_43200.raw', '/home/data/MV0907/raw/os150/mv2009_130_50400.raw', '/home/data/MV0907/raw/os150/mv2009_130_57600.raw', '/home/data/MV0907/raw/os150/mv2009_130_64800.raw', '/home/data/MV0907/raw/os150/mv2009_130_72000.raw', '/home/data/MV0907/raw/os150/mv2009_130_79200.raw', '/home/data/MV0907/raw/os150/mv2009_131_00000.raw', '/home/data/MV0907/raw/os150/mv2009_131_07200.raw', '/home/data/MV0907/raw/os150/mv2009_131_14400.raw', '/home/data/MV0907/raw/os150/mv2009_131_21600.raw', '/home/data/MV0907/raw/os150/mv2009_131_28800.raw', '/home/data/MV0907/raw/os150/mv2009_131_36000.raw', '/home/data/MV0907/raw/os150/mv2009_131_43200.raw', '/home/data/MV0907/raw/os150/mv2009_131_50400.raw', '/home/data/MV0907/raw/os150/mv2009_131_57600.raw', '/home/data/MV0907/raw/os150/mv2009_131_64800.raw'] setup_info False skip_avg True smfile refsm.sm steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_matplotlib False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2009 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-05-12 18:32:53,236 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2009-05-12 18:32:53,236 DEBUG quick_run scanning files for time ranges... 2009-05-12 18:32:53,236 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb/scan 2009-05-12 18:32:53,236 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/scan 2009-05-12 18:32:53,236 DEBUG quick_setup running python command "method" 2009-05-12 18:32:53,236 DEBUG call_matlab --> clear all 2009-05-12 18:32:53,240 DEBUG call_matlab <-- >> 2009-05-12 18:32:53,240 DEBUG call_matlab --> close all 2009-05-12 18:32:53,279 DEBUG call_matlab <-- >> 2009-05-12 18:32:53,279 DEBUG call_matlab --> cd /home/data/MV0907/proc/os150bb/scan 2009-05-12 18:32:53,281 DEBUG call_matlab <-- >> 2009-05-12 18:32:53,281 DEBUG call_matlab --> scan_tmp 2009-05-12 18:32:53,819 DEBUG call_matlab <-- getting config files from "/home/data/MV0907/proc/os150bb/config" running "MV0907_cfg.m" running "MV0907_proc.m" writing scan info to a_mv.scn >> 2009-05-12 18:32:53,819 DEBUG quick_run writing time range from a_mv.scn to a_mv.tr 2009-05-12 18:32:53,820 DEBUG quick_run getting scan time range 2009-05-12 18:32:53,820 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:53,820 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/scan 2009-05-12 18:32:53,820 DEBUG quick_setup running python command "method" 2009-05-12 18:32:53,820 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:53,821 DEBUG quick_subs extracting time range 2009-05-12 18:32:53,822 DEBUG quick_subs start_end_time 2009/05/07 11:02:01 to 2009/05/12 18:29:53 2009-05-12 18:32:53,822 DEBUG quick_subs dd0: 126.459734 dd1: 131.770752 2009-05-12 18:32:53,822 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/MV0907/proc/os150bb 2009-05-12 18:32:53,822 DEBUG quick_adcp looking for database with adcpdb/a_mv*.blk 2009-05-12 18:32:53,823 DEBUG quick_adcp database found: listing blocks 2009-05-12 18:32:53,823 DEBUG quick_subs removing a_mvdir.blk 2009-05-12 18:32:53,823 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:32:53,823 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:32:53,823 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:32:53,835 DEBUG quick_subs database passes. 2009-05-12 18:32:53,835 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:53,835 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:53,835 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/adcpdb 2009-05-12 18:32:53,836 DEBUG quick_setup running python command "method" 2009-05-12 18:32:53,836 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:53,836 DEBUG quick_subs extracting time range 2009-05-12 18:32:53,836 DEBUG quick_subs start_end_time 2009/05/07 11:07:06 to 2009/05/12 17:59:21 2009-05-12 18:32:53,836 DEBUG quick_subs dd0: 126.463264 dd1: 131.749549 2009-05-12 18:32:53,836 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:53,837 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:53,837 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/adcpdb 2009-05-12 18:32:53,837 DEBUG quick_setup running python command "method" 2009-05-12 18:32:53,837 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:53,837 DEBUG quick_subs extracting time range 2009-05-12 18:32:53,837 DEBUG quick_subs start_end_time 2009/05/07 11:07:06 to 2009/05/12 17:59:21 2009-05-12 18:32:53,837 DEBUG quick_subs dd0: 126.463264 dd1: 131.749549 2009-05-12 18:32:53,838 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2009-05-12 18:32:53,838 DEBUG quick_adcp origdb_time_range is 2009/05/07 11:07:06 to 2009/05/12 17:59:21 2009-05-12 18:32:53,838 DEBUG quick_adcp (126.463264 to 131.749549) 2009-05-12 18:32:53,838 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2009-05-12 18:32:53,838 DEBUG quick_subs getting current (remaining after deletion) database times 2009-05-12 18:32:53,839 DEBUG quick_subs ['adcpdb/a_mv001.blk', 'adcpdb/a_mv006.blk', 'adcpdb/a_mv010.blk', 'adcpdb/a_mv005.blk', 'adcpdb/a_mv009.blk', 'adcpdb/a_mv011.blk', 'adcpdb/a_mvdir.blk', 'adcpdb/a_mv002.blk', 'adcpdb/a_mv004.blk', 'adcpdb/a_mv008.blk', 'adcpdb/a_mv007.blk', 'adcpdb/a_mv003.blk'] 2009-05-12 18:32:53,839 DEBUG quick_subs length is 12 2009-05-12 18:32:53,839 DEBUG quick_subs removing a_mvdir.blk 2009-05-12 18:32:53,839 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:32:53,839 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:32:53,839 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:32:53,848 DEBUG quick_subs database passes. 2009-05-12 18:32:53,849 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:53,849 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:53,849 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/adcpdb 2009-05-12 18:32:53,849 DEBUG quick_setup running python command "method" 2009-05-12 18:32:53,849 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:53,849 DEBUG quick_subs extracting time range 2009-05-12 18:32:53,850 DEBUG quick_subs start_end_time 2009/05/07 11:07:06 to 2009/05/12 17:59:21 2009-05-12 18:32:53,850 DEBUG quick_subs dd0: 126.463264 dd1: 131.749549 2009-05-12 18:32:53,850 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:53,850 DEBUG quick_subs reading time range 2009-05-12 18:32:53,850 DEBUG quick_subs start_end_time 2009/05/07 11:07:06 to 2009/05/12 17:59:21 2009-05-12 18:32:53,850 DEBUG quick_subs dd0: 126.463264 dd1: 131.749549 2009-05-12 18:32:53,851 INFO quick_subs Tue May 12 18:32:53 2009 2009-05-12 18:32:53,851 INFO quick_subs checking database time range by listblk 2009-05-12 18:32:53,851 DEBUG quick_subs removing a_mvdir.blk 2009-05-12 18:32:53,851 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:32:53,851 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:32:53,851 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:32:53,860 DEBUG quick_subs database passes. 2009-05-12 18:32:53,861 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:53,861 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:53,861 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/adcpdb 2009-05-12 18:32:53,861 DEBUG quick_setup running python command "method" 2009-05-12 18:32:53,861 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:53,861 DEBUG quick_subs extracting time range 2009-05-12 18:32:53,862 DEBUG quick_subs start_end_time 2009/05/07 11:07:06 to 2009/05/12 17:59:21 2009-05-12 18:32:53,862 DEBUG quick_subs dd0: 126.463264 dd1: 131.749549 2009-05-12 18:32:53,863 INFO quick_subs found line /* 0 n= 146 a_mv001.blk */ 2009/05/07 11:07:06 to 2009/05/07 23:17:42 2009-05-12 18:32:53,863 INFO quick_subs found line /* 1 n= 146 a_mv002.blk */ 2009/05/07 23:22:44 to 2009/05/08 11:33:15 2009-05-12 18:32:53,863 INFO quick_subs found line /* 2 n= 146 a_mv003.blk */ 2009/05/08 11:38:17 to 2009/05/08 23:48:39 2009-05-12 18:32:53,864 INFO quick_subs found line /* 3 n= 146 a_mv004.blk */ 2009/05/08 23:53:41 to 2009/05/09 12:04:09 2009-05-12 18:32:53,864 INFO quick_subs found line /* 4 n= 146 a_mv005.blk */ 2009/05/09 12:09:10 to 2009/05/10 00:16:54 2009-05-12 18:32:53,864 INFO quick_subs found line /* 5 n= 146 a_mv006.blk */ 2009/05/10 00:21:56 to 2009/05/10 12:32:21 2009-05-12 18:32:53,864 INFO quick_subs found line /* 6 n= 146 a_mv007.blk */ 2009/05/10 12:37:23 to 2009/05/11 00:47:18 2009-05-12 18:32:53,864 INFO quick_subs found line /* 7 n= 146 a_mv008.blk */ 2009/05/11 00:52:19 to 2009/05/11 13:01:43 2009-05-12 18:32:53,864 INFO quick_subs found line /* 8 n= 146 a_mv009.blk */ 2009/05/11 13:06:45 to 2009/05/12 01:16:46 2009-05-12 18:32:53,864 INFO quick_subs found line /* 9 n= 146 a_mv010.blk */ 2009/05/12 01:21:48 to 2009/05/12 13:32:17 2009-05-12 18:32:53,864 INFO quick_subs found line /* 10 n= 53 a_mv011.blk */ 2009/05/12 13:37:20 to 2009/05/12 17:59:21 2009-05-12 18:32:53,865 INFO quick_subs scan data start at 126.4597338 2009-05-12 18:32:53,865 INFO quick_subs scan time range: 2009/05/07 11:02:01 to 2009/05/12 18:29:53 2009-05-12 18:32:53,865 INFO quick_subs codasdb ends at 131.7495486 (2009/05/12 17:59:21) 2009-05-12 18:32:53,865 DEBUG quick_subs ... changed dirs, in /home/data/MV0907/proc/os150bb/adcpdb 2009-05-12 18:32:53,865 DEBUG quick_subs deleting these files: ['a_mv011.blk'] 2009-05-12 18:32:53,866 DEBUG quick_subs getting current (remaining after deletion) database times 2009-05-12 18:32:53,866 DEBUG quick_subs ['adcpdb/a_mv001.blk', 'adcpdb/a_mv006.blk', 'adcpdb/a_mv010.blk', 'adcpdb/a_mv005.blk', 'adcpdb/a_mv009.blk', 'adcpdb/a_mv002.blk', 'adcpdb/a_mv004.blk', 'adcpdb/a_mv008.blk', 'adcpdb/a_mv007.blk', 'adcpdb/a_mv003.blk'] 2009-05-12 18:32:53,866 DEBUG quick_subs length is 10 2009-05-12 18:32:53,866 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:32:53,866 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:32:53,867 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:32:53,875 DEBUG quick_subs database passes. 2009-05-12 18:32:53,876 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:53,876 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:53,876 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/adcpdb 2009-05-12 18:32:53,876 DEBUG quick_setup running python command "method" 2009-05-12 18:32:53,876 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:53,877 DEBUG quick_subs extracting time range 2009-05-12 18:32:53,877 DEBUG quick_subs start_end_time 2009/05/07 11:07:06 to 2009/05/12 13:32:17 2009-05-12 18:32:53,877 DEBUG quick_subs dd0: 126.463264 dd1: 131.564086 2009-05-12 18:32:53,877 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:53,877 DEBUG quick_subs reading time range 2009-05-12 18:32:53,877 DEBUG quick_subs start_end_time 2009/05/07 11:07:06 to 2009/05/12 13:32:17 2009-05-12 18:32:53,878 DEBUG quick_subs dd0: 126.463264 dd1: 131.564086 2009-05-12 18:32:53,878 DEBUG quick_subs codas database currently goes from 2009/05/07 11:07:06 to 2009/05/12 13:32:17 2009-05-12 18:32:53,878 DEBUG quick_subs (126.463264 to 131.564086) 2009-05-12 18:32:53,878 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009found existing adcpdb blocks: %s 010 2009-05-12 18:32:53,879 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 011 2009-05-12 18:32:53,879 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010'] 2009-05-12 18:32:53,879 DEBUG quick_subs checked: unloaded blkstrs: ['011'] 2009-05-12 18:32:53,879 DEBUG quick_subs first unloaded file is load/ens_blk011.cmd 2009-05-12 18:32:53,880 DEBUG quick_subs data goes from 2009/05/12 13:37:20 to 2009/05/12 18:29:53 2009-05-12 18:32:53,880 DEBUG quick_subs (131.567593 to 131.770752) 2009-05-12 18:32:53,880 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/MV0907/raw/os150/mv2009_126_39717.raw /home/data/MV0907/raw/os150/mv2009_126_43200.raw /home/data/MV0907/raw/os150/mv2009_126_50400.raw /home/data/MV0907/raw/os150/mv2009_126_57600.raw /home/data/MV0907/raw/os150/mv2009_126_64800.raw /home/data/MV0907/raw/os150/mv2009_126_72000.raw /home/data/MV0907/raw/os150/mv2009_126_79200.raw /home/data/MV0907/raw/os150/mv2009_127_00000.raw /home/data/MV0907/raw/os150/mv2009_127_07200.raw /home/data/MV0907/raw/os150/mv2009_127_14400.raw /home/data/MV0907/raw/os150/mv2009_127_21600.raw /home/data/MV0907/raw/os150/mv2009_127_28800.raw /home/data/MV0907/raw/os150/mv2009_127_36000.raw /home/data/MV0907/raw/os150/mv2009_127_43200.raw /home/data/MV0907/raw/os150/mv2009_127_50400.raw /home/data/MV0907/raw/os150/mv2009_127_57600.raw /home/data/MV0907/raw/os150/mv2009_127_64800.raw /home/data/MV0907/raw/os150/mv2009_127_72000.raw /home/data/MV0907/raw/os150/mv2009_127_79200.raw /home/data/MV0907/raw/os150/mv2009_128_00000.raw /home/data/MV0907/raw/os150/mv2009_128_07200.raw /home/data/MV0907/raw/os150/mv2009_128_14400.raw /home/data/MV0907/raw/os150/mv2009_128_21600.raw /home/data/MV0907/raw/os150/mv2009_128_28800.raw /home/data/MV0907/raw/os150/mv2009_128_36000.raw /home/data/MV0907/raw/os150/mv2009_128_43200.raw /home/data/MV0907/raw/os150/mv2009_128_50400.raw /home/data/MV0907/raw/os150/mv2009_128_57600.raw /home/data/MV0907/raw/os150/mv2009_128_64800.raw /home/data/MV0907/raw/os150/mv2009_128_72000.raw /home/data/MV0907/raw/os150/mv2009_128_79200.raw /home/data/MV0907/raw/os150/mv2009_129_00000.raw /home/data/MV0907/raw/os150/mv2009_129_07200.raw /home/data/MV0907/raw/os150/mv2009_129_14400.raw /home/data/MV0907/raw/os150/mv2009_129_21600.raw /home/data/MV0907/raw/os150/mv2009_129_28800.raw /home/data/MV0907/raw/os150/mv2009_129_36000.raw /home/data/MV0907/raw/os150/mv2009_129_43200.raw /home/data/MV0907/raw/os150/mv2009_129_50400.raw /home/data/MV0907/raw/os150/mv2009_129_57600.raw /home/data/MV0907/raw/os150/mv2009_129_64800.raw /home/data/MV0907/raw/os150/mv2009_129_72000.raw /home/data/MV0907/raw/os150/mv2009_129_79200.raw /home/data/MV0907/raw/os150/mv2009_130_00000.raw /home/data/MV0907/raw/os150/mv2009_130_07200.raw /home/data/MV0907/raw/os150/mv2009_130_14400.raw /home/data/MV0907/raw/os150/mv2009_130_21600.raw /home/data/MV0907/raw/os150/mv2009_130_28800.raw /home/data/MV0907/raw/os150/mv2009_130_36000.raw /home/data/MV0907/raw/os150/mv2009_130_43200.raw /home/data/MV0907/raw/os150/mv2009_130_50400.raw /home/data/MV0907/raw/os150/mv2009_130_57600.raw /home/data/MV0907/raw/os150/mv2009_130_64800.raw /home/data/MV0907/raw/os150/mv2009_130_72000.raw /home/data/MV0907/raw/os150/mv2009_130_79200.raw /home/data/MV0907/raw/os150/mv2009_131_00000.raw /home/data/MV0907/raw/os150/mv2009_131_07200.raw /home/data/MV0907/raw/os150/mv2009_131_14400.raw /home/data/MV0907/raw/os150/mv2009_131_21600.raw /home/data/MV0907/raw/os150/mv2009_131_28800.raw /home/data/MV0907/raw/os150/mv2009_131_36000.raw /home/data/MV0907/raw/os150/mv2009_131_43200.raw /home/data/MV0907/raw/os150/mv2009_131_50400.raw /home/data/MV0907/raw/os150/mv2009_131_57600.raw /home/data/MV0907/raw/os150/mv2009_131_64800.raw 2009-05-12 18:32:53,880 INFO quick_run Tue May 12 18:32:53 2009 2009-05-12 18:32:53,880 INFO quick_run about to load uhdas files 2009-05-12 18:32:53,880 INFO quick_run /home/data/MV0907/raw/os150/mv2009_126_39717.raw /home/data/MV0907/raw/os150/mv2009_126_43200.raw /home/data/MV0907/raw/os150/mv2009_126_50400.raw /home/data/MV0907/raw/os150/mv2009_126_57600.raw /home/data/MV0907/raw/os150/mv2009_126_64800.raw /home/data/MV0907/raw/os150/mv2009_126_72000.raw /home/data/MV0907/raw/os150/mv2009_126_79200.raw /home/data/MV0907/raw/os150/mv2009_127_00000.raw /home/data/MV0907/raw/os150/mv2009_127_07200.raw /home/data/MV0907/raw/os150/mv2009_127_14400.raw /home/data/MV0907/raw/os150/mv2009_127_21600.raw /home/data/MV0907/raw/os150/mv2009_127_28800.raw /home/data/MV0907/raw/os150/mv2009_127_36000.raw /home/data/MV0907/raw/os150/mv2009_127_43200.raw /home/data/MV0907/raw/os150/mv2009_127_50400.raw /home/data/MV0907/raw/os150/mv2009_127_57600.raw /home/data/MV0907/raw/os150/mv2009_127_64800.raw /home/data/MV0907/raw/os150/mv2009_127_72000.raw /home/data/MV0907/raw/os150/mv2009_127_79200.raw /home/data/MV0907/raw/os150/mv2009_128_00000.raw /home/data/MV0907/raw/os150/mv2009_128_07200.raw /home/data/MV0907/raw/os150/mv2009_128_14400.raw /home/data/MV0907/raw/os150/mv2009_128_21600.raw /home/data/MV0907/raw/os150/mv2009_128_28800.raw /home/data/MV0907/raw/os150/mv2009_128_36000.raw /home/data/MV0907/raw/os150/mv2009_128_43200.raw /home/data/MV0907/raw/os150/mv2009_128_50400.raw /home/data/MV0907/raw/os150/mv2009_128_57600.raw /home/data/MV0907/raw/os150/mv2009_128_64800.raw /home/data/MV0907/raw/os150/mv2009_128_72000.raw /home/data/MV0907/raw/os150/mv2009_128_79200.raw /home/data/MV0907/raw/os150/mv2009_129_00000.raw /home/data/MV0907/raw/os150/mv2009_129_07200.raw /home/data/MV0907/raw/os150/mv2009_129_14400.raw /home/data/MV0907/raw/os150/mv2009_129_21600.raw /home/data/MV0907/raw/os150/mv2009_129_28800.raw /home/data/MV0907/raw/os150/mv2009_129_36000.raw /home/data/MV0907/raw/os150/mv2009_129_43200.raw /home/data/MV0907/raw/os150/mv2009_129_50400.raw /home/data/MV0907/raw/os150/mv2009_129_57600.raw /home/data/MV0907/raw/os150/mv2009_129_64800.raw /home/data/MV0907/raw/os150/mv2009_129_72000.raw /home/data/MV0907/raw/os150/mv2009_129_79200.raw /home/data/MV0907/raw/os150/mv2009_130_00000.raw /home/data/MV0907/raw/os150/mv2009_130_07200.raw /home/data/MV0907/raw/os150/mv2009_130_14400.raw /home/data/MV0907/raw/os150/mv2009_130_21600.raw /home/data/MV0907/raw/os150/mv2009_130_28800.raw /home/data/MV0907/raw/os150/mv2009_130_36000.raw /home/data/MV0907/raw/os150/mv2009_130_43200.raw /home/data/MV0907/raw/os150/mv2009_130_50400.raw /home/data/MV0907/raw/os150/mv2009_130_57600.raw /home/data/MV0907/raw/os150/mv2009_130_64800.raw /home/data/MV0907/raw/os150/mv2009_130_72000.raw /home/data/MV0907/raw/os150/mv2009_130_79200.raw /home/data/MV0907/raw/os150/mv2009_131_00000.raw /home/data/MV0907/raw/os150/mv2009_131_07200.raw /home/data/MV0907/raw/os150/mv2009_131_14400.raw /home/data/MV0907/raw/os150/mv2009_131_21600.raw /home/data/MV0907/raw/os150/mv2009_131_28800.raw /home/data/MV0907/raw/os150/mv2009_131_36000.raw /home/data/MV0907/raw/os150/mv2009_131_43200.raw /home/data/MV0907/raw/os150/mv2009_131_50400.raw /home/data/MV0907/raw/os150/mv2009_131_57600.raw /home/data/MV0907/raw/os150/mv2009_131_64800.raw 2009-05-12 18:32:53,881 DEBUG quick_setup load/ldcodas.tmp exists 2009-05-12 18:32:53,881 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:53,881 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/load 2009-05-12 18:32:53,881 DEBUG quick_setup running python command "method" 2009-05-12 18:32:53,881 DEBUG quick_subs in /home/data/MV0907/proc/os150bb/load 2009-05-12 18:32:53,881 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010'] 2009-05-12 18:32:53,882 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011'] 2009-05-12 18:32:53,882 DEBUG quick_subs starttime is 2009/05/12 13:37:20 2009-05-12 18:32:53,882 DEBUG quick_subs RESETTING thisload_time_range 2009-05-12 18:32:53,882 DEBUG quick_subs time range of data to be loaded: 2009/05/12 13:37:20 to 2009/05/12 18:29:53 2009-05-12 18:32:53,882 DEBUG quick_subs data startdd 131.567593 data enddd 131.770752 2009-05-12 18:32:53,883 DEBUG quick_subs about to load from these cmd files ['ens_blk011.cmd'] 2009-05-12 18:32:53,883 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_mv DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2009 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk011.cmd 2009-05-12 18:32:53,883 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2009-05-12 18:32:53,901 DEBUG quick_subs removing a_mvdir.blk 2009-05-12 18:32:53,901 DEBUG quick_subs about to run mkblkdir 2009-05-12 18:32:53,901 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-05-12 18:32:53,901 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-05-12 18:32:53,912 DEBUG quick_subs database passes. 2009-05-12 18:32:53,913 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:53,913 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:53,913 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/adcpdb 2009-05-12 18:32:53,913 DEBUG quick_setup running python command "method" 2009-05-12 18:32:53,913 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:53,914 DEBUG quick_subs extracting time range 2009-05-12 18:32:53,914 DEBUG quick_subs start_end_time 2009/05/07 11:07:06 to 2009/05/12 18:29:35 2009-05-12 18:32:53,914 DEBUG quick_subs dd0: 126.463264 dd1: 131.770544 2009-05-12 18:32:53,914 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-05-12 18:32:53,914 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:53,914 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/adcpdb 2009-05-12 18:32:53,915 DEBUG quick_setup running python command "method" 2009-05-12 18:32:53,915 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-05-12 18:32:53,915 DEBUG quick_subs extracting time range 2009-05-12 18:32:53,915 DEBUG quick_subs start_end_time 2009/05/07 11:07:06 to 2009/05/12 18:29:35 2009-05-12 18:32:53,915 DEBUG quick_subs dd0: 126.463264 dd1: 131.770544 2009-05-12 18:32:53,915 DEBUG quick_adcp loaded_time_range is 2009/05/07 11:07:06 to 2009/05/12 18:29:35 2009-05-12 18:32:53,916 DEBUG quick_adcp (126.463264 to 131.770544) 2009-05-12 18:32:53,916 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:53,916 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/adcpdb 2009-05-12 18:32:53,916 DEBUG quick_setup running python command "method" 2009-05-12 18:32:53,916 DEBUG quick_subs dbname: a_mv output: a_mv.cnh time_ranges: all 2009-05-12 18:32:53,916 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2009-05-12 18:32:53,938 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2009-05-12 18:32:53,939 DEBUG quick_run executing commands from /home/data/MV0907/proc/os150bb/edit 2009-05-12 18:32:53,939 DEBUG quick_run setup.m exists. not replacing 2009-05-12 18:32:53,939 DEBUG quick_run asetup.m exists. not replacing 2009-05-12 18:32:53,939 DEBUG quick_run aflagit_setup.m exists. not replacing 2009-05-12 18:32:53,939 DEBUG quick_run ------------ step 4: run setflags ------------- 2009-05-12 18:32:53,939 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:53,939 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/edit 2009-05-12 18:32:53,939 DEBUG quick_setup running python command "method" 2009-05-12 18:32:53,940 DEBUG quick_subs dbname: ../adcpdb/a_mv pg_min: 50 set_range_bit time_ranges: all 2009-05-12 18:32:53,940 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-05-12 18:32:53,967 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2009-05-12 18:32:53,967 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:53,967 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/nav 2009-05-12 18:32:53,968 DEBUG quick_setup running python command "method" 2009-05-12 18:32:53,969 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2009-05-12 18:32:53,970 DEBUG quick_run hcorr_inst is ashtech 2009-05-12 18:32:53,970 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2009-05-12 18:32:53,970 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:53,970 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/cal/rotate 2009-05-12 18:32:53,970 DEBUG quick_setup running python command "method" 2009-05-12 18:32:53,970 DEBUG quick_subs dbname: ../../adcpdb/a_mv output: scn.hdg step_size= 1 year_base= 2009 time_ranges: all 2009-05-12 18:32:53,971 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2009-05-12 18:32:53,990 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:53,990 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/cal/rotate 2009-05-12 18:32:53,990 DEBUG quick_setup running python command "method" 2009-05-12 18:32:54,178 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') hcorfile = 'ens_hcorr.asc'; proc_yearbase = 2009; cruiseid = 'MV0907'; if exist(hcorfile) plot_hcorstats('comment', cruiseid,... 'proc_yearbase', proc_yearbase,... 'plot_ddrange', 1,... 'plottype','fancy',... 'hcorfile', hcorfile,... 'gps_attname', 'ashtech',... 'cruiseid', cruiseid,... 'outfilebase', 'hcorr'); end 2009-05-12 18:32:55,792 DEBUG quick_run ------------ step 7: rotate ------------- 2009-05-12 18:32:55,793 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:55,793 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/cal/rotate 2009-05-12 18:32:55,793 DEBUG quick_setup running python command "method" 2009-05-12 18:32:55,809 DEBUG quick_subs last rotated time from log file: 2009/05/12 18:02:25 2009-05-12 18:32:55,809 DEBUG quick_subs time range of currently loaded data: 2009/05/07 11:07:06 to 2009/05/12 18:29:35 2009-05-12 18:32:55,809 DEBUG quick_subs (126.463264 to 131.770544) 2009-05-12 18:32:55,809 DEBUG quick_setup cal/rotate/rotate.tmp exists 2009-05-12 18:32:55,810 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:55,810 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/cal/rotate 2009-05-12 18:32:55,810 DEBUG quick_setup running python command "method" 2009-05-12 18:32:55,810 DEBUG quick_subs DB_NAME: ../../adcpdb/a_mv LOG_FILE: rotate.log TIME_RANGE: 2009/05/12 13:37:20 to 2009/05/12 18:29:53 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2009 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2009-05-12 18:32:55,810 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2009-05-12 18:32:55,816 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-05-12 18:32:55,816 DEBUG quick_setup nav/as_nav.tmp exists 2009-05-12 18:32:55,816 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:55,817 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/nav 2009-05-12 18:32:55,817 DEBUG quick_setup running python command "method" 2009-05-12 18:32:55,817 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/05/07 11:07:06 to 2009/05/12 18:29:35 /* the whole time range */ 2009-05-12 18:32:55,817 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-05-12 18:32:55,853 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-05-12 18:32:55,853 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:55,853 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/nav 2009-05-12 18:32:55,854 DEBUG quick_setup running python command "method" 2009-05-12 18:32:55,854 DEBUG quick_subs fix_file_type: simple reference_file: a_mv.nav fix_file: a_mv.gps output: a_mv.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-05-12 18:32:55,854 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-05-12 18:32:55,880 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-05-12 18:32:55,881 DEBUG quick_setup nav/smoothr.tmp exists 2009-05-12 18:32:55,881 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:55,881 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/nav 2009-05-12 18:32:55,881 DEBUG quick_setup running python command "method" 2009-05-12 18:32:55,881 DEBUG quick_subs reference_file: a_mv.nav refabs_output: a_mv.ref output: a_mv.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-05-12 18:32:55,881 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-05-12 18:32:56,018 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:56,018 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/nav 2009-05-12 18:32:56,018 DEBUG quick_setup running python command "method" 2009-05-12 18:32:56,019 DEBUG call_matlab --> clear all 2009-05-12 18:32:56,047 DEBUG call_matlab <-- >> 2009-05-12 18:32:56,047 DEBUG call_matlab --> close all 2009-05-12 18:32:56,101 DEBUG call_matlab <-- >> 2009-05-12 18:32:56,101 DEBUG call_matlab --> cd /home/data/MV0907/proc/os150bb/nav 2009-05-12 18:32:56,103 DEBUG call_matlab <-- >> 2009-05-12 18:32:56,103 DEBUG call_matlab --> refsm 2009-05-12 18:32:56,643 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_mv opened Searching CODAS database ==> ../adcpdb/a_mv for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 1519 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 89 percent done... 99 percent done... >> 2009-05-12 18:32:56,643 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-05-12 18:32:56,643 DEBUG quick_setup nav/putnav.tmp exists 2009-05-12 18:32:56,643 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:56,643 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/nav 2009-05-12 18:32:56,644 DEBUG quick_setup running python command "method" 2009-05-12 18:32:56,644 DEBUG quick_subs dbname: ../adcpdb/a_mv position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-05-12 18:32:56,644 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-05-12 18:32:56,687 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-05-12 18:32:56,688 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:56,688 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/nav 2009-05-12 18:32:56,688 DEBUG quick_setup running python command "method" 2009-05-12 18:32:56,689 DEBUG quick_subs Created callrtmp.m 2009-05-12 18:32:56,689 DEBUG call_matlab --> clear all 2009-05-12 18:32:56,695 DEBUG call_matlab <-- >> 2009-05-12 18:32:56,695 DEBUG call_matlab --> close all 2009-05-12 18:32:56,734 DEBUG call_matlab <-- >> 2009-05-12 18:32:56,734 DEBUG call_matlab --> cd /home/data/MV0907/proc/os150bb/nav 2009-05-12 18:32:56,736 DEBUG call_matlab <-- >> 2009-05-12 18:32:56,736 DEBUG call_matlab --> callrtmp_tmp 2009-05-12 18:32:57,585 DEBUG call_matlab <-- cruise = MV0907 cruise = MV0907 cruise = MV0907 No data available. >> 2009-05-12 18:32:57,585 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2009-05-12 18:32:57,585 DEBUG quick_run find profile flags ------------ *** ------------- 2009-05-12 18:32:57,585 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:57,586 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/edit 2009-05-12 18:32:57,586 DEBUG quick_setup running python command "method" 2009-05-12 18:32:58,504 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2009-05-12 18:32:58,504 DEBUG quick_run starting in: /home/data/MV0907/proc/os150bb 2009-05-12 18:32:58,505 DEBUG quick_run executing commands from: edit 2009-05-12 18:32:58,507 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_mv abadprf_tmp.asc 2009-05-12 18:32:58,510 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_mv abadbin_tmp.asc 2009-05-12 18:32:58,517 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_mv 2009-05-12 18:32:58,521 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-05-12 18:32:58,547 DEBUG quick_run changing directories back to /home/data/MV0907/proc/os150bb 2009-05-12 18:32:58,548 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2009-05-12 18:32:58,548 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-05-12 18:32:58,548 DEBUG quick_setup nav/as_nav.tmp exists 2009-05-12 18:32:58,548 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:58,548 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/nav 2009-05-12 18:32:58,549 DEBUG quick_setup running python command "method" 2009-05-12 18:32:58,549 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/05/07 11:07:06 to 2009/05/12 18:29:35 /* the whole time range */ 2009-05-12 18:32:58,549 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-05-12 18:32:58,591 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-05-12 18:32:58,592 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:58,592 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/nav 2009-05-12 18:32:58,592 DEBUG quick_setup running python command "method" 2009-05-12 18:32:58,592 DEBUG quick_subs fix_file_type: simple reference_file: a_mv.nav fix_file: a_mv.gps output: a_mv.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-05-12 18:32:58,592 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-05-12 18:32:58,623 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-05-12 18:32:58,623 DEBUG quick_setup nav/smoothr.tmp exists 2009-05-12 18:32:58,623 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:58,623 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/nav 2009-05-12 18:32:58,623 DEBUG quick_setup running python command "method" 2009-05-12 18:32:58,623 DEBUG quick_subs reference_file: a_mv.nav refabs_output: a_mv.ref output: a_mv.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-05-12 18:32:58,624 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-05-12 18:32:58,781 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:58,781 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/nav 2009-05-12 18:32:58,782 DEBUG quick_setup running python command "method" 2009-05-12 18:32:58,782 DEBUG call_matlab --> clear all 2009-05-12 18:32:58,792 DEBUG call_matlab <-- >> 2009-05-12 18:32:58,792 DEBUG call_matlab --> close all 2009-05-12 18:32:58,831 DEBUG call_matlab <-- >> 2009-05-12 18:32:58,831 DEBUG call_matlab --> cd /home/data/MV0907/proc/os150bb/nav 2009-05-12 18:32:58,833 DEBUG call_matlab <-- >> 2009-05-12 18:32:58,833 DEBUG call_matlab --> refsm 2009-05-12 18:32:59,380 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_mv opened Searching CODAS database ==> ../adcpdb/a_mv for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 1519 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 89 percent done... 99 percent done... >> 2009-05-12 18:32:59,380 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-05-12 18:32:59,380 DEBUG quick_setup nav/putnav.tmp exists 2009-05-12 18:32:59,380 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:59,380 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/nav 2009-05-12 18:32:59,380 DEBUG quick_setup running python command "method" 2009-05-12 18:32:59,380 DEBUG quick_subs dbname: ../adcpdb/a_mv position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-05-12 18:32:59,381 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-05-12 18:32:59,422 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-05-12 18:32:59,422 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:32:59,422 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/nav 2009-05-12 18:32:59,422 DEBUG quick_setup running python command "method" 2009-05-12 18:32:59,423 DEBUG quick_subs Created callrtmp.m 2009-05-12 18:32:59,423 DEBUG call_matlab --> clear all 2009-05-12 18:32:59,429 DEBUG call_matlab <-- >> 2009-05-12 18:32:59,430 DEBUG call_matlab --> close all 2009-05-12 18:32:59,471 DEBUG call_matlab <-- >> 2009-05-12 18:32:59,471 DEBUG call_matlab --> cd /home/data/MV0907/proc/os150bb/nav 2009-05-12 18:32:59,472 DEBUG call_matlab <-- >> 2009-05-12 18:32:59,473 DEBUG call_matlab --> callrtmp_tmp 2009-05-12 18:33:00,325 DEBUG call_matlab <-- cruise = MV0907 cruise = MV0907 cruise = MV0907 No data available. >> 2009-05-12 18:33:00,326 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2009-05-12 18:33:00,326 DEBUG quick_setup edit/lst_temp.tmp exists 2009-05-12 18:33:00,326 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:33:00,326 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/edit 2009-05-12 18:33:00,326 DEBUG quick_setup running python command "method" 2009-05-12 18:33:00,326 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv.tem step_size= 1 year_base= 2009 time_ranges: all 2009-05-12 18:33:00,326 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2009-05-12 18:33:00,347 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:33:00,347 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/edit 2009-05-12 18:33:00,348 DEBUG quick_setup running python command "method" 2009-05-12 18:33:00,937 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2009-05-12 18:33:00,937 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2009-05-12 18:33:00,937 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:33:00,937 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/cal/botmtrk 2009-05-12 18:33:00,937 DEBUG quick_setup running python command "method" 2009-05-12 18:33:00,937 DEBUG quick_subs dbname: ../../adcpdb/a_mv output: a_mv.btm step_size= 1 year_base= 2009 time_ranges: 2009/05/07 11:07:06 to 2009/05/12 18:29:35 /* whole time range */ 2009-05-12 18:33:00,938 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2009-05-12 18:33:00,948 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2009-05-12 18:33:00,948 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:33:00,948 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/cal/botmtrk 2009-05-12 18:33:00,948 DEBUG quick_setup running python command "method" 2009-05-12 18:33:00,948 DEBUG quick_subs fix_file_type: simple reference_file: a_mv.btm fix_file: ../../nav/a_mv.gps output: a_mv.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 60 2009-05-12 18:33:00,949 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2009-05-12 18:33:00,953 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:33:00,954 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/cal/botmtrk 2009-05-12 18:33:00,954 DEBUG quick_setup running python command "method" 2009-05-12 18:33:00,954 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') [a, ph, gd_mask, d] = ... btcaluv('a_mv.ref','a_mv.btm',... 'ADCP MV0907 step size 1 ', 1); 2009-05-12 18:33:01,071 DEBUG quick_setup nav/as_nav.tmp exists 2009-05-12 18:33:01,071 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:33:01,071 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/nav 2009-05-12 18:33:01,072 DEBUG quick_setup running python command "method" 2009-05-12 18:33:01,072 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/05/07 11:07:06 to 2009/05/12 18:29:35 /* the whole time range */ 2009-05-12 18:33:01,072 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-05-12 18:33:01,109 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2009-05-12 18:33:01,109 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:33:01,109 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/cal/watertrk 2009-05-12 18:33:01,110 DEBUG quick_setup running python command "method" 2009-05-12 18:33:01,110 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_mv.gps reference_file: ../../nav/a_mv.nav output_file: a_mv_7.cal year_base= 2009 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2009-05-12 18:33:01,110 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2009-05-12 18:33:01,124 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:33:01,124 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/cal/watertrk 2009-05-12 18:33:01,125 DEBUG quick_setup running python command "method" 2009-05-12 18:33:01,125 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') adcpcal('a_mv_7.cal', 'ADCP MV0907 7ens') 2009-05-12 18:33:01,125 DEBUG call_matlab --> clear all 2009-05-12 18:33:01,129 DEBUG call_matlab <-- >> 2009-05-12 18:33:01,130 DEBUG call_matlab --> close all 2009-05-12 18:33:01,167 DEBUG call_matlab <-- >> 2009-05-12 18:33:01,168 DEBUG call_matlab --> cd /home/data/MV0907/proc/os150bb/cal/watertrk 2009-05-12 18:33:01,169 DEBUG call_matlab <-- >> 2009-05-12 18:33:01,169 DEBUG call_matlab --> calladcpcal_tmp 2009-05-12 18:33:01,954 DEBUG call_matlab <-- figure saved as cal1.ps figure saved as cal2.ps ans = 40 ans = j_ph: 11 j_amp: 10 j_t: 2 j_du: 5 j_dv: 6 j_dt: 9 j_mvar: 8 j_var: 7 calr: [27x11 double] igood: [22x1 double] >> 2009-05-12 18:33:01,954 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2009-05-12 18:33:01,954 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:33:01,954 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/vector 2009-05-12 18:33:01,954 DEBUG quick_setup running python command "method" 2009-05-12 18:33:01,954 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_mv.tmp 2009-05-12 18:33:01,960 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:33:01,960 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/vector 2009-05-12 18:33:01,960 DEBUG quick_setup running python command "method" 2009-05-12 18:33:01,960 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2009-05-12 18:33:02,004 DEBUG quick_asect done making vector matfiles 2009-05-12 18:33:02,004 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:33:02,005 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/contour 2009-05-12 18:33:02,005 DEBUG quick_setup running python command "method" 2009-05-12 18:33:02,005 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_mv.tmp 2009-05-12 18:33:02,011 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:33:02,011 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/contour 2009-05-12 18:33:02,012 DEBUG quick_setup running python command "method" 2009-05-12 18:33:02,012 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2009-05-12 18:33:02,081 DEBUG quick_setup starting in /home/data/MV0907/proc/os150bb 2009-05-12 18:33:02,081 DEBUG quick_setup executing commands from /home/data/MV0907/proc/os150bb/contour 2009-05-12 18:33:02,081 DEBUG quick_setup about to run getmat -rs -f allbins_ ../adcpdb/a_mv 2009-05-12 18:33:02,230 DEBUG quick_asect done running getmat with "allbins" 2009-05-12 18:33:02,231 INFO root copying NOFIG to /home/adcp/www/figures/os150bb_hcorr_plot.png 2009-05-12 18:33:02,231 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os150bb_hcorr_plot_thumb.png 2009-05-12 18:33:02,231 DEBUG root matfile is contour/contour_uv.mat 2009-05-12 18:33:02,239 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os150bb_cont_uv.mat 2009-05-12 18:33:02,239 DEBUG root matfile is vector/vector_uv.mat 2009-05-12 18:33:02,240 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os150bb_vect_uv.mat 2009-05-12 18:33:02,240 DEBUG root matfile is contour/contour_xy.mat 2009-05-12 18:33:02,240 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os150bb_cont_xy.mat 2009-05-12 18:33:02,240 DEBUG root matfile is vector/vector_xy.mat 2009-05-12 18:33:02,240 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os150bb_vect_xy.mat 2009-05-12 18:33:02,241 DEBUG root about to copy file edit/a_mv.tem to /home/adcp/www/data/os150bb_temp.asc 2009-05-12 18:33:02,241 INFO root copying edit/a_mv.tem to /home/adcp/www/data/os150bb_temp.asc 2009-05-12 18:33:02,241 INFO root Ending quick_adcp.py 2009-05-12 18:33:02,298 DEBUG quick_setup killed matlab engine