2009-03-02 04:56:07,620 DEBUG root about to write control file parameters to --yearbase 2009 --pingtype nb --cfgbase MV0903 --cruisename MV0903 --instclass os --instname os75 --dbname a_mv --datatype uhdas --datadir /home/data/MV0903/raw/os75 --cfgpath /home/data/MV0903/proc/os75nb/config --ens_len 300 --ping_headcorr --hcorr_inst ashtech --use_topo4edit ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --acc_heading_cutoff 0.020000 2009-03-02 04:56:07,622 DEBUG quick_adcp progdir = /home/currents/programs 2009-03-02 04:56:07,622 DEBUG quick_adcp binos = lnx 2009-03-02 04:56:07,623 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2009-03-02 04:56:07,623 DEBUG quick_setup yearbase is 2009, proc_yearbase is 2009 2009-03-02 04:56:07,623 DEBUG quick_setup processing data logged with uhdas: 2009-03-02 04:56:07,623 DEBUG quick_setup datatype is uhdas 2009-03-02 04:56:07,623 DEBUG quick_setup pingtype is nb 2009-03-02 04:56:07,623 DEBUG quick_setup instclass is os 2009-03-02 04:56:07,623 DEBUG quick_setup no post-processing heading correction will be used 2009-03-02 04:56:07,623 DEBUG quick_setup transducer depth set in *_cfg.m file 2009-03-02 04:56:07,623 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'MV0903',... 'cfgpath' , '/home/data/MV0903/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2009-03-02 04:56:07,624 DEBUG quick_setup ------- starting Matlab engine ------- 2009-03-02 04:56:07,624 DEBUG quick_setup ['/home/currents/programs/matlab'] 2009-03-02 04:56:07,638 DEBUG call_matlab starting to wait for initial prompt 2009-03-02 04:56:08,346 DEBUG call_matlab received initial prompt 2009-03-02 04:56:08,495 DEBUG quick_adcp cwd is /home/data/MV0903/proc/os75nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-03-02 04:56:08,496 DEBUG quick_adcp original fix file is a_mv.gps 2009-03-02 04:56:08,496 DEBUG quick_adcp smoothed nav file is refsm.sm 2009-03-02 04:56:08,496 DEBUG quick_asect extracting matlab files for os75, nb pings 2009-03-02 04:56:08,639 DEBUG quick_subs found 36 files using wildcard expansion from "/home/data/MV0903/raw/os75/*.raw" 2009-03-02 04:56:08,639 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/MV0903/raw/os75/mv2009_057_26737.raw /home/data/MV0903/raw/os75/mv2009_057_28800.raw /home/data/MV0903/raw/os75/mv2009_057_36000.raw /home/data/MV0903/raw/os75/mv2009_057_43200.raw /home/data/MV0903/raw/os75/mv2009_057_50400.raw /home/data/MV0903/raw/os75/mv2009_057_57600.raw /home/data/MV0903/raw/os75/mv2009_057_64800.raw /home/data/MV0903/raw/os75/mv2009_057_72000.raw /home/data/MV0903/raw/os75/mv2009_057_79200.raw /home/data/MV0903/raw/os75/mv2009_058_00000.raw /home/data/MV0903/raw/os75/mv2009_058_07200.raw /home/data/MV0903/raw/os75/mv2009_058_14400.raw /home/data/MV0903/raw/os75/mv2009_058_21600.raw /home/data/MV0903/raw/os75/mv2009_058_28800.raw /home/data/MV0903/raw/os75/mv2009_058_36000.raw /home/data/MV0903/raw/os75/mv2009_058_43200.raw /home/data/MV0903/raw/os75/mv2009_058_50400.raw /home/data/MV0903/raw/os75/mv2009_058_57600.raw /home/data/MV0903/raw/os75/mv2009_058_64800.raw /home/data/MV0903/raw/os75/mv2009_058_72000.raw /home/data/MV0903/raw/os75/mv2009_058_79200.raw /home/data/MV0903/raw/os75/mv2009_059_00000.raw /home/data/MV0903/raw/os75/mv2009_059_07200.raw /home/data/MV0903/raw/os75/mv2009_059_14400.raw /home/data/MV0903/raw/os75/mv2009_059_21600.raw /home/data/MV0903/raw/os75/mv2009_059_28800.raw /home/data/MV0903/raw/os75/mv2009_059_36000.raw /home/data/MV0903/raw/os75/mv2009_059_43200.raw /home/data/MV0903/raw/os75/mv2009_059_50400.raw /home/data/MV0903/raw/os75/mv2009_059_57600.raw /home/data/MV0903/raw/os75/mv2009_059_64800.raw /home/data/MV0903/raw/os75/mv2009_059_72000.raw /home/data/MV0903/raw/os75/mv2009_059_79200.raw /home/data/MV0903/raw/os75/mv2009_060_00000.raw /home/data/MV0903/raw/os75/mv2009_060_07200.raw /home/data/MV0903/raw/os75/mv2009_060_14400.raw 2009-03-02 04:56:08,639 DEBUG quick_adcp LASTFILES invoked. using only 36 files from end of filelist 2009-03-02 04:56:08,639 DEBUG quick_adcp using delblks = 1 2009-03-02 04:56:08,639 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/MV0903/raw/os75/mv2009_057_26737.raw /home/data/MV0903/raw/os75/mv2009_057_28800.raw /home/data/MV0903/raw/os75/mv2009_057_36000.raw /home/data/MV0903/raw/os75/mv2009_057_43200.raw /home/data/MV0903/raw/os75/mv2009_057_50400.raw /home/data/MV0903/raw/os75/mv2009_057_57600.raw /home/data/MV0903/raw/os75/mv2009_057_64800.raw /home/data/MV0903/raw/os75/mv2009_057_72000.raw /home/data/MV0903/raw/os75/mv2009_057_79200.raw /home/data/MV0903/raw/os75/mv2009_058_00000.raw /home/data/MV0903/raw/os75/mv2009_058_07200.raw /home/data/MV0903/raw/os75/mv2009_058_14400.raw /home/data/MV0903/raw/os75/mv2009_058_21600.raw /home/data/MV0903/raw/os75/mv2009_058_28800.raw /home/data/MV0903/raw/os75/mv2009_058_36000.raw /home/data/MV0903/raw/os75/mv2009_058_43200.raw /home/data/MV0903/raw/os75/mv2009_058_50400.raw /home/data/MV0903/raw/os75/mv2009_058_57600.raw /home/data/MV0903/raw/os75/mv2009_058_64800.raw /home/data/MV0903/raw/os75/mv2009_058_72000.raw /home/data/MV0903/raw/os75/mv2009_058_79200.raw /home/data/MV0903/raw/os75/mv2009_059_00000.raw /home/data/MV0903/raw/os75/mv2009_059_07200.raw /home/data/MV0903/raw/os75/mv2009_059_14400.raw /home/data/MV0903/raw/os75/mv2009_059_21600.raw /home/data/MV0903/raw/os75/mv2009_059_28800.raw /home/data/MV0903/raw/os75/mv2009_059_36000.raw /home/data/MV0903/raw/os75/mv2009_059_43200.raw /home/data/MV0903/raw/os75/mv2009_059_50400.raw /home/data/MV0903/raw/os75/mv2009_059_57600.raw /home/data/MV0903/raw/os75/mv2009_059_64800.raw /home/data/MV0903/raw/os75/mv2009_059_72000.raw /home/data/MV0903/raw/os75/mv2009_059_79200.raw /home/data/MV0903/raw/os75/mv2009_060_00000.raw /home/data/MV0903/raw/os75/mv2009_060_07200.raw /home/data/MV0903/raw/os75/mv2009_060_14400.raw 2009-03-02 04:56:08,640 DEBUG quick_adcp Mon Mar 2 04:56:08 2009 running quick_adcp.py as follows: --cntfile /home/data/MV0903/proc/os75nb/os75nb_qpy.cnt ----- adcpsect variables ------ afilebase a_mv cbasename contour dbname a_mv dbpath ../adcpdb deeper_boundaries [75, 125, 175, 250, 300, 350, 400, 450, 500, 550, 600, 650, 700, 750, 800, 850] firstdepth 29 gridnum 45 increment 20 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2009 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.02 adjust_time 1 afilebase a_mv allow_reload True auto True bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase MV0903 cfgpath /home/data/MV0903/proc/os75nb/config cntfile /home/data/MV0903/proc/os75nb/os75nb_qpy.cnt commands None cruisename MV0903 data_def vmadcp.def datadir /home/data/MV0903/raw/os75 datafile_glob *.raw datatype uhdas dbname a_mv dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False filelist ['/home/data/MV0903/raw/os75/mv2009_057_26737.raw', '/home/data/MV0903/raw/os75/mv2009_057_28800.raw', '/home/data/MV0903/raw/os75/mv2009_057_36000.raw', '/home/data/MV0903/raw/os75/mv2009_057_43200.raw', '/home/data/MV0903/raw/os75/mv2009_057_50400.raw', '/home/data/MV0903/raw/os75/mv2009_057_57600.raw', '/home/data/MV0903/raw/os75/mv2009_057_64800.raw', '/home/data/MV0903/raw/os75/mv2009_057_72000.raw', '/home/data/MV0903/raw/os75/mv2009_057_79200.raw', '/home/data/MV0903/raw/os75/mv2009_058_00000.raw', '/home/data/MV0903/raw/os75/mv2009_058_07200.raw', '/home/data/MV0903/raw/os75/mv2009_058_14400.raw', '/home/data/MV0903/raw/os75/mv2009_058_21600.raw', '/home/data/MV0903/raw/os75/mv2009_058_28800.raw', '/home/data/MV0903/raw/os75/mv2009_058_36000.raw', '/home/data/MV0903/raw/os75/mv2009_058_43200.raw', '/home/data/MV0903/raw/os75/mv2009_058_50400.raw', '/home/data/MV0903/raw/os75/mv2009_058_57600.raw', '/home/data/MV0903/raw/os75/mv2009_058_64800.raw', '/home/data/MV0903/raw/os75/mv2009_058_72000.raw', '/home/data/MV0903/raw/os75/mv2009_058_79200.raw', '/home/data/MV0903/raw/os75/mv2009_059_00000.raw', '/home/data/MV0903/raw/os75/mv2009_059_07200.raw', '/home/data/MV0903/raw/os75/mv2009_059_14400.raw', '/home/data/MV0903/raw/os75/mv2009_059_21600.raw', '/home/data/MV0903/raw/os75/mv2009_059_28800.raw', '/home/data/MV0903/raw/os75/mv2009_059_36000.raw', '/home/data/MV0903/raw/os75/mv2009_059_43200.raw', '/home/data/MV0903/raw/os75/mv2009_059_50400.raw', '/home/data/MV0903/raw/os75/mv2009_059_57600.raw', '/home/data/MV0903/raw/os75/mv2009_059_64800.raw', '/home/data/MV0903/raw/os75/mv2009_059_72000.raw', '/home/data/MV0903/raw/os75/mv2009_059_79200.raw', '/home/data/MV0903/raw/os75/mv2009_060_00000.raw', '/home/data/MV0903/raw/os75/mv2009_060_07200.raw', '/home/data/MV0903/raw/os75/mv2009_060_14400.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 29 fixfile a_mv.gps hcorr_inst ashtech head_func None help False hidedisplay True howto_lta False howto_ping False instclass os instname os75 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os75'; pingtype = 'nb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'MV0903',... 'cfgpath' , '/home/data/MV0903/proc/os75nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_mv.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False proc_yearbase 2009 procdir os75nb progdir /home/currents/programs quiet True rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/MV0903/raw/os75/mv2009_057_26737.raw', '/home/data/MV0903/raw/os75/mv2009_057_28800.raw', '/home/data/MV0903/raw/os75/mv2009_057_36000.raw', '/home/data/MV0903/raw/os75/mv2009_057_43200.raw', '/home/data/MV0903/raw/os75/mv2009_057_50400.raw', '/home/data/MV0903/raw/os75/mv2009_057_57600.raw', '/home/data/MV0903/raw/os75/mv2009_057_64800.raw', '/home/data/MV0903/raw/os75/mv2009_057_72000.raw', '/home/data/MV0903/raw/os75/mv2009_057_79200.raw', '/home/data/MV0903/raw/os75/mv2009_058_00000.raw', '/home/data/MV0903/raw/os75/mv2009_058_07200.raw', '/home/data/MV0903/raw/os75/mv2009_058_14400.raw', '/home/data/MV0903/raw/os75/mv2009_058_21600.raw', '/home/data/MV0903/raw/os75/mv2009_058_28800.raw', '/home/data/MV0903/raw/os75/mv2009_058_36000.raw', '/home/data/MV0903/raw/os75/mv2009_058_43200.raw', '/home/data/MV0903/raw/os75/mv2009_058_50400.raw', '/home/data/MV0903/raw/os75/mv2009_058_57600.raw', '/home/data/MV0903/raw/os75/mv2009_058_64800.raw', '/home/data/MV0903/raw/os75/mv2009_058_72000.raw', '/home/data/MV0903/raw/os75/mv2009_058_79200.raw', '/home/data/MV0903/raw/os75/mv2009_059_00000.raw', '/home/data/MV0903/raw/os75/mv2009_059_07200.raw', '/home/data/MV0903/raw/os75/mv2009_059_14400.raw', '/home/data/MV0903/raw/os75/mv2009_059_21600.raw', '/home/data/MV0903/raw/os75/mv2009_059_28800.raw', '/home/data/MV0903/raw/os75/mv2009_059_36000.raw', '/home/data/MV0903/raw/os75/mv2009_059_43200.raw', '/home/data/MV0903/raw/os75/mv2009_059_50400.raw', '/home/data/MV0903/raw/os75/mv2009_059_57600.raw', '/home/data/MV0903/raw/os75/mv2009_059_64800.raw', '/home/data/MV0903/raw/os75/mv2009_059_72000.raw', '/home/data/MV0903/raw/os75/mv2009_059_79200.raw', '/home/data/MV0903/raw/os75/mv2009_060_00000.raw', '/home/data/MV0903/raw/os75/mv2009_060_07200.raw', '/home/data/MV0903/raw/os75/mv2009_060_14400.raw'] setup_info False skip_avg True smfile refsm.sm steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_matplotlib False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2009 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-03-02 04:56:08,641 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2009-03-02 04:56:08,641 DEBUG quick_run scanning files for time ranges... 2009-03-02 04:56:08,641 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb/scan 2009-03-02 04:56:08,641 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/scan 2009-03-02 04:56:08,641 DEBUG quick_setup running python command "method" 2009-03-02 04:56:08,641 DEBUG call_matlab --> clear all 2009-03-02 04:56:08,645 DEBUG call_matlab <-- >> 2009-03-02 04:56:08,645 DEBUG call_matlab --> close all 2009-03-02 04:56:08,683 DEBUG call_matlab <-- >> 2009-03-02 04:56:08,684 DEBUG call_matlab --> cd /home/data/MV0903/proc/os75nb/scan 2009-03-02 04:56:08,685 DEBUG call_matlab <-- >> 2009-03-02 04:56:08,685 DEBUG call_matlab --> scan_tmp 2009-03-02 04:56:09,215 DEBUG call_matlab <-- getting config files from "/home/data/MV0903/proc/os75nb/config" running "MV0903_cfg.m" running "MV0903_proc.m" writing scan info to a_mv.scn >> 2009-03-02 04:56:09,215 DEBUG quick_run writing time range from a_mv.scn to a_mv.tr 2009-03-02 04:56:09,216 DEBUG quick_run getting scan time range 2009-03-02 04:56:09,216 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:09,216 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/scan 2009-03-02 04:56:09,216 DEBUG quick_setup running python command "method" 2009-03-02 04:56:09,216 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-03-02 04:56:09,217 DEBUG quick_subs extracting time range 2009-03-02 04:56:09,218 DEBUG quick_subs start_end_time 2009/02/27 07:25:43 to 2009/03/02 04:52:28 2009-03-02 04:56:09,218 DEBUG quick_subs dd0: 57.309525 dd1: 60.203102 2009-03-02 04:56:09,218 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/MV0903/proc/os75nb 2009-03-02 04:56:09,218 DEBUG quick_adcp looking for database with adcpdb/a_mv*.blk 2009-03-02 04:56:09,218 DEBUG quick_adcp database found: listing blocks 2009-03-02 04:56:09,219 DEBUG quick_subs removing a_mvdir.blk 2009-03-02 04:56:09,219 DEBUG quick_subs about to run mkblkdir 2009-03-02 04:56:09,219 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-03-02 04:56:09,219 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-03-02 04:56:09,230 DEBUG quick_subs database passes. 2009-03-02 04:56:09,231 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-03-02 04:56:09,231 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:09,231 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/adcpdb 2009-03-02 04:56:09,231 DEBUG quick_setup running python command "method" 2009-03-02 04:56:09,231 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-03-02 04:56:09,231 DEBUG quick_subs extracting time range 2009-03-02 04:56:09,232 DEBUG quick_subs start_end_time 2009/02/27 07:30:49 to 2009/03/02 04:21:40 2009-03-02 04:56:09,232 DEBUG quick_subs dd0: 57.313067 dd1: 60.181713 2009-03-02 04:56:09,232 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-03-02 04:56:09,232 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:09,232 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/adcpdb 2009-03-02 04:56:09,232 DEBUG quick_setup running python command "method" 2009-03-02 04:56:09,232 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-03-02 04:56:09,232 DEBUG quick_subs extracting time range 2009-03-02 04:56:09,233 DEBUG quick_subs start_end_time 2009/02/27 07:30:49 to 2009/03/02 04:21:40 2009-03-02 04:56:09,233 DEBUG quick_subs dd0: 57.313067 dd1: 60.181713 2009-03-02 04:56:09,233 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2009-03-02 04:56:09,233 DEBUG quick_adcp origdb_time_range is 2009/02/27 07:30:49 to 2009/03/02 04:21:40 2009-03-02 04:56:09,233 DEBUG quick_adcp (57.313067 to 60.181713) 2009-03-02 04:56:09,233 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2009-03-02 04:56:09,234 DEBUG quick_subs getting current (remaining after deletion) database times 2009-03-02 04:56:09,234 DEBUG quick_subs ['adcpdb/a_mv001.blk', 'adcpdb/a_mv006.blk', 'adcpdb/a_mv005.blk', 'adcpdb/a_mvdir.blk', 'adcpdb/a_mv002.blk', 'adcpdb/a_mv004.blk', 'adcpdb/a_mv003.blk'] 2009-03-02 04:56:09,234 DEBUG quick_subs length is 7 2009-03-02 04:56:09,234 DEBUG quick_subs removing a_mvdir.blk 2009-03-02 04:56:09,234 DEBUG quick_subs about to run mkblkdir 2009-03-02 04:56:09,234 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-03-02 04:56:09,234 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-03-02 04:56:09,242 DEBUG quick_subs database passes. 2009-03-02 04:56:09,242 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-03-02 04:56:09,242 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:09,242 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/adcpdb 2009-03-02 04:56:09,243 DEBUG quick_setup running python command "method" 2009-03-02 04:56:09,243 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-03-02 04:56:09,243 DEBUG quick_subs extracting time range 2009-03-02 04:56:09,243 DEBUG quick_subs start_end_time 2009/02/27 07:30:49 to 2009/03/02 04:21:40 2009-03-02 04:56:09,243 DEBUG quick_subs dd0: 57.313067 dd1: 60.181713 2009-03-02 04:56:09,243 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-03-02 04:56:09,244 DEBUG quick_subs reading time range 2009-03-02 04:56:09,244 DEBUG quick_subs start_end_time 2009/02/27 07:30:49 to 2009/03/02 04:21:40 2009-03-02 04:56:09,244 DEBUG quick_subs dd0: 57.313067 dd1: 60.181713 2009-03-02 04:56:09,244 INFO quick_subs Mon Mar 2 04:56:09 2009 2009-03-02 04:56:09,244 INFO quick_subs checking database time range by listblk 2009-03-02 04:56:09,244 DEBUG quick_subs removing a_mvdir.blk 2009-03-02 04:56:09,245 DEBUG quick_subs about to run mkblkdir 2009-03-02 04:56:09,245 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-03-02 04:56:09,245 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-03-02 04:56:09,252 DEBUG quick_subs database passes. 2009-03-02 04:56:09,252 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-03-02 04:56:09,253 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:09,253 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/adcpdb 2009-03-02 04:56:09,253 DEBUG quick_setup running python command "method" 2009-03-02 04:56:09,253 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-03-02 04:56:09,253 DEBUG quick_subs extracting time range 2009-03-02 04:56:09,254 DEBUG quick_subs start_end_time 2009/02/27 07:30:49 to 2009/03/02 04:21:40 2009-03-02 04:56:09,254 DEBUG quick_subs dd0: 57.313067 dd1: 60.181713 2009-03-02 04:56:09,255 INFO quick_subs found line /* 0 n= 146 a_mv001.blk */ 2009/02/27 07:30:49 to 2009/02/27 19:50:18 2009-03-02 04:56:09,255 INFO quick_subs found line /* 1 n= 146 a_mv002.blk */ 2009/02/27 19:55:24 to 2009/02/28 08:19:58 2009-03-02 04:56:09,255 INFO quick_subs found line /* 2 n= 146 a_mv003.blk */ 2009/02/28 08:25:04 to 2009/02/28 20:44:32 2009-03-02 04:56:09,255 INFO quick_subs found line /* 3 n= 146 a_mv004.blk */ 2009/02/28 20:49:38 to 2009/03/01 09:09:07 2009-03-02 04:56:09,256 INFO quick_subs found line /* 4 n= 146 a_mv005.blk */ 2009/03/01 09:14:13 to 2009/03/01 21:38:47 2009-03-02 04:56:09,256 INFO quick_subs found line /* 5 n= 78 a_mv006.blk */ 2009/03/01 21:43:53 to 2009/03/02 04:21:40 2009-03-02 04:56:09,256 INFO quick_subs scan data start at 57.3095255 2009-03-02 04:56:09,256 INFO quick_subs scan time range: 2009/02/27 07:25:43 to 2009/03/02 04:52:28 2009-03-02 04:56:09,256 INFO quick_subs codasdb ends at 60.1817130 (2009/03/02 04:21:40) 2009-03-02 04:56:09,256 DEBUG quick_subs ... changed dirs, in /home/data/MV0903/proc/os75nb/adcpdb 2009-03-02 04:56:09,256 DEBUG quick_subs deleting these files: ['a_mv006.blk'] 2009-03-02 04:56:09,257 DEBUG quick_subs getting current (remaining after deletion) database times 2009-03-02 04:56:09,257 DEBUG quick_subs ['adcpdb/a_mv001.blk', 'adcpdb/a_mv005.blk', 'adcpdb/a_mv002.blk', 'adcpdb/a_mv004.blk', 'adcpdb/a_mv003.blk'] 2009-03-02 04:56:09,257 DEBUG quick_subs length is 5 2009-03-02 04:56:09,257 DEBUG quick_subs about to run mkblkdir 2009-03-02 04:56:09,257 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-03-02 04:56:09,257 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-03-02 04:56:09,265 DEBUG quick_subs database passes. 2009-03-02 04:56:09,265 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-03-02 04:56:09,265 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:09,265 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/adcpdb 2009-03-02 04:56:09,266 DEBUG quick_setup running python command "method" 2009-03-02 04:56:09,266 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-03-02 04:56:09,266 DEBUG quick_subs extracting time range 2009-03-02 04:56:09,266 DEBUG quick_subs start_end_time 2009/02/27 07:30:49 to 2009/03/01 21:38:47 2009-03-02 04:56:09,266 DEBUG quick_subs dd0: 57.313067 dd1: 59.901933 2009-03-02 04:56:09,266 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-03-02 04:56:09,267 DEBUG quick_subs reading time range 2009-03-02 04:56:09,267 DEBUG quick_subs start_end_time 2009/02/27 07:30:49 to 2009/03/01 21:38:47 2009-03-02 04:56:09,267 DEBUG quick_subs dd0: 57.313067 dd1: 59.901933 2009-03-02 04:56:09,267 DEBUG quick_subs codas database currently goes from 2009/02/27 07:30:49 to 2009/03/01 21:38:47 2009-03-02 04:56:09,267 DEBUG quick_subs (57.313067 to 59.901933) 2009-03-02 04:56:09,267 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005 2009-03-02 04:56:09,268 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 2009-03-02 04:56:09,268 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005'] 2009-03-02 04:56:09,268 DEBUG quick_subs checked: unloaded blkstrs: ['006'] 2009-03-02 04:56:09,268 DEBUG quick_subs first unloaded file is load/ens_blk006.cmd 2009-03-02 04:56:09,269 DEBUG quick_subs data goes from 2009/03/01 21:43:53 to 2009/03/02 04:52:28 2009-03-02 04:56:09,269 DEBUG quick_subs (59.905475 to 60.203102) 2009-03-02 04:56:09,269 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/MV0903/raw/os75/mv2009_057_26737.raw /home/data/MV0903/raw/os75/mv2009_057_28800.raw /home/data/MV0903/raw/os75/mv2009_057_36000.raw /home/data/MV0903/raw/os75/mv2009_057_43200.raw /home/data/MV0903/raw/os75/mv2009_057_50400.raw /home/data/MV0903/raw/os75/mv2009_057_57600.raw /home/data/MV0903/raw/os75/mv2009_057_64800.raw /home/data/MV0903/raw/os75/mv2009_057_72000.raw /home/data/MV0903/raw/os75/mv2009_057_79200.raw /home/data/MV0903/raw/os75/mv2009_058_00000.raw /home/data/MV0903/raw/os75/mv2009_058_07200.raw /home/data/MV0903/raw/os75/mv2009_058_14400.raw /home/data/MV0903/raw/os75/mv2009_058_21600.raw /home/data/MV0903/raw/os75/mv2009_058_28800.raw /home/data/MV0903/raw/os75/mv2009_058_36000.raw /home/data/MV0903/raw/os75/mv2009_058_43200.raw /home/data/MV0903/raw/os75/mv2009_058_50400.raw /home/data/MV0903/raw/os75/mv2009_058_57600.raw /home/data/MV0903/raw/os75/mv2009_058_64800.raw /home/data/MV0903/raw/os75/mv2009_058_72000.raw /home/data/MV0903/raw/os75/mv2009_058_79200.raw /home/data/MV0903/raw/os75/mv2009_059_00000.raw /home/data/MV0903/raw/os75/mv2009_059_07200.raw /home/data/MV0903/raw/os75/mv2009_059_14400.raw /home/data/MV0903/raw/os75/mv2009_059_21600.raw /home/data/MV0903/raw/os75/mv2009_059_28800.raw /home/data/MV0903/raw/os75/mv2009_059_36000.raw /home/data/MV0903/raw/os75/mv2009_059_43200.raw /home/data/MV0903/raw/os75/mv2009_059_50400.raw /home/data/MV0903/raw/os75/mv2009_059_57600.raw /home/data/MV0903/raw/os75/mv2009_059_64800.raw /home/data/MV0903/raw/os75/mv2009_059_72000.raw /home/data/MV0903/raw/os75/mv2009_059_79200.raw /home/data/MV0903/raw/os75/mv2009_060_00000.raw /home/data/MV0903/raw/os75/mv2009_060_07200.raw /home/data/MV0903/raw/os75/mv2009_060_14400.raw 2009-03-02 04:56:09,269 INFO quick_run Mon Mar 2 04:56:09 2009 2009-03-02 04:56:09,269 INFO quick_run about to load uhdas files 2009-03-02 04:56:09,270 INFO quick_run /home/data/MV0903/raw/os75/mv2009_057_26737.raw /home/data/MV0903/raw/os75/mv2009_057_28800.raw /home/data/MV0903/raw/os75/mv2009_057_36000.raw /home/data/MV0903/raw/os75/mv2009_057_43200.raw /home/data/MV0903/raw/os75/mv2009_057_50400.raw /home/data/MV0903/raw/os75/mv2009_057_57600.raw /home/data/MV0903/raw/os75/mv2009_057_64800.raw /home/data/MV0903/raw/os75/mv2009_057_72000.raw /home/data/MV0903/raw/os75/mv2009_057_79200.raw /home/data/MV0903/raw/os75/mv2009_058_00000.raw /home/data/MV0903/raw/os75/mv2009_058_07200.raw /home/data/MV0903/raw/os75/mv2009_058_14400.raw /home/data/MV0903/raw/os75/mv2009_058_21600.raw /home/data/MV0903/raw/os75/mv2009_058_28800.raw /home/data/MV0903/raw/os75/mv2009_058_36000.raw /home/data/MV0903/raw/os75/mv2009_058_43200.raw /home/data/MV0903/raw/os75/mv2009_058_50400.raw /home/data/MV0903/raw/os75/mv2009_058_57600.raw /home/data/MV0903/raw/os75/mv2009_058_64800.raw /home/data/MV0903/raw/os75/mv2009_058_72000.raw /home/data/MV0903/raw/os75/mv2009_058_79200.raw /home/data/MV0903/raw/os75/mv2009_059_00000.raw /home/data/MV0903/raw/os75/mv2009_059_07200.raw /home/data/MV0903/raw/os75/mv2009_059_14400.raw /home/data/MV0903/raw/os75/mv2009_059_21600.raw /home/data/MV0903/raw/os75/mv2009_059_28800.raw /home/data/MV0903/raw/os75/mv2009_059_36000.raw /home/data/MV0903/raw/os75/mv2009_059_43200.raw /home/data/MV0903/raw/os75/mv2009_059_50400.raw /home/data/MV0903/raw/os75/mv2009_059_57600.raw /home/data/MV0903/raw/os75/mv2009_059_64800.raw /home/data/MV0903/raw/os75/mv2009_059_72000.raw /home/data/MV0903/raw/os75/mv2009_059_79200.raw /home/data/MV0903/raw/os75/mv2009_060_00000.raw /home/data/MV0903/raw/os75/mv2009_060_07200.raw /home/data/MV0903/raw/os75/mv2009_060_14400.raw 2009-03-02 04:56:09,270 DEBUG quick_setup load/ldcodas.tmp exists 2009-03-02 04:56:09,270 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:09,270 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/load 2009-03-02 04:56:09,270 DEBUG quick_setup running python command "method" 2009-03-02 04:56:09,270 DEBUG quick_subs in /home/data/MV0903/proc/os75nb/load 2009-03-02 04:56:09,270 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005'] 2009-03-02 04:56:09,271 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006'] 2009-03-02 04:56:09,271 DEBUG quick_subs starttime is 2009/03/01 21:43:53 2009-03-02 04:56:09,271 DEBUG quick_subs RESETTING thisload_time_range 2009-03-02 04:56:09,271 DEBUG quick_subs time range of data to be loaded: 2009/03/01 21:43:53 to 2009/03/02 04:52:28 2009-03-02 04:56:09,271 DEBUG quick_subs data startdd 59.905475 data enddd 60.203102 2009-03-02 04:56:09,272 DEBUG quick_subs about to load from these cmd files ['ens_blk006.cmd'] 2009-03-02 04:56:09,272 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_mv DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2009 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk006.cmd 2009-03-02 04:56:09,272 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2009-03-02 04:56:09,292 DEBUG quick_subs removing a_mvdir.blk 2009-03-02 04:56:09,292 DEBUG quick_subs about to run mkblkdir 2009-03-02 04:56:09,292 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-03-02 04:56:09,292 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-03-02 04:56:09,300 DEBUG quick_subs database passes. 2009-03-02 04:56:09,300 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-03-02 04:56:09,301 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:09,301 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/adcpdb 2009-03-02 04:56:09,301 DEBUG quick_setup running python command "method" 2009-03-02 04:56:09,301 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-03-02 04:56:09,301 DEBUG quick_subs extracting time range 2009-03-02 04:56:09,301 DEBUG quick_subs start_end_time 2009/02/27 07:30:49 to 2009/03/02 04:52:16 2009-03-02 04:56:09,302 DEBUG quick_subs dd0: 57.313067 dd1: 60.202963 2009-03-02 04:56:09,302 DEBUG quick_subs writing time range from a_mv.lst to a_mv.tr 2009-03-02 04:56:09,302 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:09,302 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/adcpdb 2009-03-02 04:56:09,302 DEBUG quick_setup running python command "method" 2009-03-02 04:56:09,302 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-03-02 04:56:09,302 DEBUG quick_subs extracting time range 2009-03-02 04:56:09,303 DEBUG quick_subs start_end_time 2009/02/27 07:30:49 to 2009/03/02 04:52:16 2009-03-02 04:56:09,303 DEBUG quick_subs dd0: 57.313067 dd1: 60.202963 2009-03-02 04:56:09,303 DEBUG quick_adcp loaded_time_range is 2009/02/27 07:30:49 to 2009/03/02 04:52:16 2009-03-02 04:56:09,303 DEBUG quick_adcp (57.313067 to 60.202963) 2009-03-02 04:56:09,303 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:09,303 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/adcpdb 2009-03-02 04:56:09,303 DEBUG quick_setup running python command "method" 2009-03-02 04:56:09,303 DEBUG quick_subs dbname: a_mv output: a_mv.cnh time_ranges: all 2009-03-02 04:56:09,304 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2009-03-02 04:56:09,313 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2009-03-02 04:56:09,313 DEBUG quick_run executing commands from /home/data/MV0903/proc/os75nb/edit 2009-03-02 04:56:09,313 DEBUG quick_run setup.m exists. not replacing 2009-03-02 04:56:09,313 DEBUG quick_run asetup.m exists. not replacing 2009-03-02 04:56:09,313 DEBUG quick_run aflagit_setup.m exists. not replacing 2009-03-02 04:56:09,313 DEBUG quick_run ------------ step 4: run setflags ------------- 2009-03-02 04:56:09,314 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:09,314 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/edit 2009-03-02 04:56:09,314 DEBUG quick_setup running python command "method" 2009-03-02 04:56:09,314 DEBUG quick_subs dbname: ../adcpdb/a_mv pg_min: 50 set_range_bit time_ranges: all 2009-03-02 04:56:09,314 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-03-02 04:56:09,329 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2009-03-02 04:56:09,329 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:09,329 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/nav 2009-03-02 04:56:09,329 DEBUG quick_setup running python command "method" 2009-03-02 04:56:09,330 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2009-03-02 04:56:09,331 DEBUG quick_run hcorr_inst is ashtech 2009-03-02 04:56:09,331 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2009-03-02 04:56:09,331 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:09,331 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/cal/rotate 2009-03-02 04:56:09,331 DEBUG quick_setup running python command "method" 2009-03-02 04:56:09,331 DEBUG quick_subs dbname: ../../adcpdb/a_mv output: scn.hdg step_size= 1 year_base= 2009 time_ranges: all 2009-03-02 04:56:09,331 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2009-03-02 04:56:09,342 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:09,342 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/cal/rotate 2009-03-02 04:56:09,343 DEBUG quick_setup running python command "method" 2009-03-02 04:56:09,505 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') hcorfile = 'ens_hcorr.asc'; proc_yearbase = 2009; cruiseid = 'MV0903'; if exist(hcorfile) plot_hcorstats('comment', cruiseid,... 'proc_yearbase', proc_yearbase,... 'plot_ddrange', 1,... 'plottype','fancy',... 'hcorfile', hcorfile,... 'gps_attname', 'ashtech',... 'cruiseid', cruiseid,... 'outfilebase', 'hcorr'); end 2009-03-02 04:56:11,510 DEBUG quick_run ------------ step 7: rotate ------------- 2009-03-02 04:56:11,510 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:11,510 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/cal/rotate 2009-03-02 04:56:11,511 DEBUG quick_setup running python command "method" 2009-03-02 04:56:11,530 DEBUG quick_subs last rotated time from log file: 2009/03/02 04:21:58 2009-03-02 04:56:11,530 DEBUG quick_subs time range of currently loaded data: 2009/02/27 07:30:49 to 2009/03/02 04:52:16 2009-03-02 04:56:11,531 DEBUG quick_subs (57.313067 to 60.202963) 2009-03-02 04:56:11,531 DEBUG quick_setup cal/rotate/rotate.tmp exists 2009-03-02 04:56:11,531 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:11,532 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/cal/rotate 2009-03-02 04:56:11,532 DEBUG quick_setup running python command "method" 2009-03-02 04:56:11,532 DEBUG quick_subs DB_NAME: ../../adcpdb/a_mv LOG_FILE: rotate.log TIME_RANGE: 2009/03/01 21:43:53 to 2009/03/02 04:52:28 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2009 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2009-03-02 04:56:11,533 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2009-03-02 04:56:11,544 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-03-02 04:56:11,544 DEBUG quick_setup nav/as_nav.tmp exists 2009-03-02 04:56:11,545 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:11,545 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/nav 2009-03-02 04:56:11,545 DEBUG quick_setup running python command "method" 2009-03-02 04:56:11,546 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/02/27 07:30:49 to 2009/03/02 04:52:16 /* the whole time range */ 2009-03-02 04:56:11,546 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-03-02 04:56:11,591 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-03-02 04:56:11,592 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:11,592 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/nav 2009-03-02 04:56:11,592 DEBUG quick_setup running python command "method" 2009-03-02 04:56:11,593 DEBUG quick_subs fix_file_type: simple reference_file: a_mv.nav fix_file: a_mv.gps output: a_mv.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-03-02 04:56:11,593 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-03-02 04:56:11,615 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-03-02 04:56:11,616 DEBUG quick_setup nav/smoothr.tmp exists 2009-03-02 04:56:11,616 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:11,616 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/nav 2009-03-02 04:56:11,616 DEBUG quick_setup running python command "method" 2009-03-02 04:56:11,616 DEBUG quick_subs reference_file: a_mv.nav refabs_output: a_mv.ref output: a_mv.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-03-02 04:56:11,616 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-03-02 04:56:11,682 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:11,682 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/nav 2009-03-02 04:56:11,682 DEBUG quick_setup running python command "method" 2009-03-02 04:56:11,682 DEBUG call_matlab --> clear all 2009-03-02 04:56:11,711 DEBUG call_matlab <-- >> 2009-03-02 04:56:11,711 DEBUG call_matlab --> close all 2009-03-02 04:56:11,765 DEBUG call_matlab <-- >> 2009-03-02 04:56:11,765 DEBUG call_matlab --> cd /home/data/MV0903/proc/os75nb/nav 2009-03-02 04:56:11,767 DEBUG call_matlab <-- >> 2009-03-02 04:56:11,767 DEBUG call_matlab --> refsm 2009-03-02 04:56:12,105 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_mv opened Searching CODAS database ==> ../adcpdb/a_mv for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 814 profiles, 20 bins INFO: database closed loading getmat output >> 2009-03-02 04:56:12,105 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-03-02 04:56:12,106 DEBUG quick_setup nav/putnav.tmp exists 2009-03-02 04:56:12,106 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:12,106 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/nav 2009-03-02 04:56:12,106 DEBUG quick_setup running python command "method" 2009-03-02 04:56:12,106 DEBUG quick_subs dbname: ../adcpdb/a_mv position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-03-02 04:56:12,106 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-03-02 04:56:12,130 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-03-02 04:56:12,131 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:12,131 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/nav 2009-03-02 04:56:12,131 DEBUG quick_setup running python command "method" 2009-03-02 04:56:12,132 DEBUG quick_subs Created callrtmp.m 2009-03-02 04:56:12,132 DEBUG call_matlab --> clear all 2009-03-02 04:56:12,138 DEBUG call_matlab <-- >> 2009-03-02 04:56:12,138 DEBUG call_matlab --> close all 2009-03-02 04:56:12,176 DEBUG call_matlab <-- >> 2009-03-02 04:56:12,176 DEBUG call_matlab --> cd /home/data/MV0903/proc/os75nb/nav 2009-03-02 04:56:12,178 DEBUG call_matlab <-- >> 2009-03-02 04:56:12,178 DEBUG call_matlab --> callrtmp_tmp 2009-03-02 04:56:12,916 DEBUG call_matlab <-- cruise = MV0903 cruise = MV0903 No data available. >> 2009-03-02 04:56:12,916 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2009-03-02 04:56:12,916 DEBUG quick_run find profile flags ------------ *** ------------- 2009-03-02 04:56:12,916 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:12,916 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/edit 2009-03-02 04:56:12,916 DEBUG quick_setup running python command "method" 2009-03-02 04:56:13,826 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2009-03-02 04:56:13,826 DEBUG quick_run starting in: /home/data/MV0903/proc/os75nb 2009-03-02 04:56:13,826 DEBUG quick_run executing commands from: edit 2009-03-02 04:56:13,828 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_mv abottom_tmp.asc 2009-03-02 04:56:13,833 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_mv abadbin_tmp.asc 2009-03-02 04:56:13,838 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_mv 2009-03-02 04:56:13,843 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-03-02 04:56:13,859 DEBUG quick_run changing directories back to /home/data/MV0903/proc/os75nb 2009-03-02 04:56:13,859 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2009-03-02 04:56:13,859 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-03-02 04:56:13,859 DEBUG quick_setup nav/as_nav.tmp exists 2009-03-02 04:56:13,859 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:13,860 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/nav 2009-03-02 04:56:13,860 DEBUG quick_setup running python command "method" 2009-03-02 04:56:13,860 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/02/27 07:30:49 to 2009/03/02 04:52:16 /* the whole time range */ 2009-03-02 04:56:13,860 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-03-02 04:56:13,881 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-03-02 04:56:13,881 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:13,881 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/nav 2009-03-02 04:56:13,881 DEBUG quick_setup running python command "method" 2009-03-02 04:56:13,881 DEBUG quick_subs fix_file_type: simple reference_file: a_mv.nav fix_file: a_mv.gps output: a_mv.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-03-02 04:56:13,882 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-03-02 04:56:13,897 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-03-02 04:56:13,898 DEBUG quick_setup nav/smoothr.tmp exists 2009-03-02 04:56:13,898 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:13,898 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/nav 2009-03-02 04:56:13,898 DEBUG quick_setup running python command "method" 2009-03-02 04:56:13,898 DEBUG quick_subs reference_file: a_mv.nav refabs_output: a_mv.ref output: a_mv.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-03-02 04:56:13,898 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-03-02 04:56:13,965 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:13,965 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/nav 2009-03-02 04:56:13,966 DEBUG quick_setup running python command "method" 2009-03-02 04:56:13,966 DEBUG call_matlab --> clear all 2009-03-02 04:56:13,976 DEBUG call_matlab <-- >> 2009-03-02 04:56:13,976 DEBUG call_matlab --> close all 2009-03-02 04:56:14,014 DEBUG call_matlab <-- >> 2009-03-02 04:56:14,015 DEBUG call_matlab --> cd /home/data/MV0903/proc/os75nb/nav 2009-03-02 04:56:14,016 DEBUG call_matlab <-- >> 2009-03-02 04:56:14,017 DEBUG call_matlab --> refsm 2009-03-02 04:56:14,361 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_mv opened Searching CODAS database ==> ../adcpdb/a_mv for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 814 profiles, 20 bins INFO: database closed loading getmat output >> 2009-03-02 04:56:14,361 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-03-02 04:56:14,361 DEBUG quick_setup nav/putnav.tmp exists 2009-03-02 04:56:14,362 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:14,362 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/nav 2009-03-02 04:56:14,362 DEBUG quick_setup running python command "method" 2009-03-02 04:56:14,362 DEBUG quick_subs dbname: ../adcpdb/a_mv position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-03-02 04:56:14,362 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-03-02 04:56:14,386 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-03-02 04:56:14,386 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:14,386 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/nav 2009-03-02 04:56:14,386 DEBUG quick_setup running python command "method" 2009-03-02 04:56:14,387 DEBUG quick_subs Created callrtmp.m 2009-03-02 04:56:14,387 DEBUG call_matlab --> clear all 2009-03-02 04:56:14,393 DEBUG call_matlab <-- >> 2009-03-02 04:56:14,393 DEBUG call_matlab --> close all 2009-03-02 04:56:14,432 DEBUG call_matlab <-- >> 2009-03-02 04:56:14,432 DEBUG call_matlab --> cd /home/data/MV0903/proc/os75nb/nav 2009-03-02 04:56:14,434 DEBUG call_matlab <-- >> 2009-03-02 04:56:14,434 DEBUG call_matlab --> callrtmp_tmp 2009-03-02 04:56:15,173 DEBUG call_matlab <-- cruise = MV0903 cruise = MV0903 No data available. >> 2009-03-02 04:56:15,173 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2009-03-02 04:56:15,173 DEBUG quick_setup edit/lst_temp.tmp exists 2009-03-02 04:56:15,173 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:15,173 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/edit 2009-03-02 04:56:15,173 DEBUG quick_setup running python command "method" 2009-03-02 04:56:15,174 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv.tem step_size= 1 year_base= 2009 time_ranges: all 2009-03-02 04:56:15,174 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2009-03-02 04:56:15,186 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:15,186 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/edit 2009-03-02 04:56:15,187 DEBUG quick_setup running python command "method" 2009-03-02 04:56:15,767 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2009-03-02 04:56:15,767 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2009-03-02 04:56:15,767 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:15,767 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/cal/botmtrk 2009-03-02 04:56:15,768 DEBUG quick_setup running python command "method" 2009-03-02 04:56:15,768 DEBUG quick_subs dbname: ../../adcpdb/a_mv output: a_mv.btm step_size= 1 year_base= 2009 time_ranges: 2009/02/27 07:30:49 to 2009/03/02 04:52:16 /* whole time range */ 2009-03-02 04:56:15,768 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2009-03-02 04:56:15,775 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2009-03-02 04:56:15,775 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:15,775 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/cal/botmtrk 2009-03-02 04:56:15,775 DEBUG quick_setup running python command "method" 2009-03-02 04:56:15,776 DEBUG quick_subs fix_file_type: simple reference_file: a_mv.btm fix_file: ../../nav/a_mv.gps output: a_mv.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 60 2009-03-02 04:56:15,776 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2009-03-02 04:56:15,779 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:15,780 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/cal/botmtrk 2009-03-02 04:56:15,780 DEBUG quick_setup running python command "method" 2009-03-02 04:56:15,780 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') [a, ph, gd_mask, d] = ... btcaluv('a_mv.ref','a_mv.btm',... 'ADCP MV0903 step size 1 ', 1); 2009-03-02 04:56:15,898 DEBUG quick_setup nav/as_nav.tmp exists 2009-03-02 04:56:15,898 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:15,898 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/nav 2009-03-02 04:56:15,898 DEBUG quick_setup running python command "method" 2009-03-02 04:56:15,898 DEBUG quick_subs dbname: ../adcpdb/a_mv output: a_mv step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/02/27 07:30:49 to 2009/03/02 04:52:16 /* the whole time range */ 2009-03-02 04:56:15,899 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-03-02 04:56:15,919 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2009-03-02 04:56:15,919 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:15,919 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/cal/watertrk 2009-03-02 04:56:15,920 DEBUG quick_setup running python command "method" 2009-03-02 04:56:15,920 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_mv.gps reference_file: ../../nav/a_mv.nav output_file: a_mv_7.cal year_base= 2009 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2009-03-02 04:56:15,920 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2009-03-02 04:56:15,930 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:15,931 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/cal/watertrk 2009-03-02 04:56:15,931 DEBUG quick_setup running python command "method" 2009-03-02 04:56:15,931 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') adcpcal('a_mv_7.cal', 'ADCP MV0903 7ens') 2009-03-02 04:56:15,931 DEBUG call_matlab --> clear all 2009-03-02 04:56:15,936 DEBUG call_matlab <-- >> 2009-03-02 04:56:15,936 DEBUG call_matlab --> close all 2009-03-02 04:56:15,974 DEBUG call_matlab <-- >> 2009-03-02 04:56:15,975 DEBUG call_matlab --> cd /home/data/MV0903/proc/os75nb/cal/watertrk 2009-03-02 04:56:15,976 DEBUG call_matlab <-- >> 2009-03-02 04:56:15,976 DEBUG call_matlab --> calladcpcal_tmp 2009-03-02 04:56:16,793 DEBUG call_matlab <-- figure saved as cal1.ps figure saved as cal2.ps ans = 40 ans = j_ph: 11 j_amp: 10 j_t: 2 j_du: 5 j_dv: 6 j_dt: 9 j_mvar: 8 j_var: 7 calr: [32x11 double] igood: [24x1 double] >> 2009-03-02 04:56:16,793 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2009-03-02 04:56:16,793 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:16,793 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/vector 2009-03-02 04:56:16,793 DEBUG quick_setup running python command "method" 2009-03-02 04:56:16,794 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_mv.tmp 2009-03-02 04:56:16,798 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:16,798 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/vector 2009-03-02 04:56:16,798 DEBUG quick_setup running python command "method" 2009-03-02 04:56:16,799 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2009-03-02 04:56:16,822 DEBUG quick_asect done making vector matfiles 2009-03-02 04:56:16,822 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:16,822 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/contour 2009-03-02 04:56:16,822 DEBUG quick_setup running python command "method" 2009-03-02 04:56:16,823 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_mv.tmp 2009-03-02 04:56:16,827 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:16,828 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/contour 2009-03-02 04:56:16,828 DEBUG quick_setup running python command "method" 2009-03-02 04:56:16,828 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2009-03-02 04:56:16,858 DEBUG quick_setup starting in /home/data/MV0903/proc/os75nb 2009-03-02 04:56:16,858 DEBUG quick_setup executing commands from /home/data/MV0903/proc/os75nb/contour 2009-03-02 04:56:16,858 DEBUG quick_setup about to run getmat -rs -f allbins_ ../adcpdb/a_mv 2009-03-02 04:56:16,923 DEBUG quick_asect done running getmat with "allbins" 2009-03-02 04:56:16,924 INFO root copying NOFIG to /home/adcp/www/figures/os75nb_hcorr_plot.png 2009-03-02 04:56:16,924 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os75nb_hcorr_plot_thumb.png 2009-03-02 04:56:16,924 DEBUG root matfile is contour/contour_uv.mat 2009-03-02 04:56:16,925 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os75nb_cont_uv.mat 2009-03-02 04:56:16,925 DEBUG root matfile is vector/vector_uv.mat 2009-03-02 04:56:16,926 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os75nb_vect_uv.mat 2009-03-02 04:56:16,926 DEBUG root matfile is contour/contour_xy.mat 2009-03-02 04:56:16,926 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os75nb_cont_xy.mat 2009-03-02 04:56:16,926 DEBUG root matfile is vector/vector_xy.mat 2009-03-02 04:56:16,926 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os75nb_vect_xy.mat 2009-03-02 04:56:16,927 DEBUG root about to copy file edit/a_mv.tem to /home/adcp/www/data/os75nb_temp.asc 2009-03-02 04:56:16,927 INFO root copying edit/a_mv.tem to /home/adcp/www/data/os75nb_temp.asc 2009-03-02 04:56:16,927 INFO root Ending quick_adcp.py 2009-03-02 04:56:16,981 DEBUG quick_setup killed matlab engine