2009-08-21 17:30:38,541 DEBUG root about to write control file parameters to --yearbase 2009 --pingtype bb --cfgbase km0920 --cruisename km0920 --instclass os --instname os38 --dbname a_km --datatype uhdas --datadir /home/data/km0920/raw/os38 --cfgpath /home/data/km0920/proc/os38bb/config --ens_len 300 --ping_headcorr --hcorr_inst posmv --use_topo4edit ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --acc_heading_cutoff 0.018000 --npycalc all --mplplots all 2009-08-21 17:30:38,541 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d os38bb --npycalc all --mplplots all 2009-08-21 17:30:38,544 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ adcpcal aedit aflagit_setup as_cont as_nav as_vect asetup ashrot btcaluv catnav check_opts cleanup copy_ensfile ddtime def_qlist get_asvars get_cmd_timerange get_data2load_timerange get_filelist get_gyrodh get_headcorrstats get_lstblk_tr get_matcfgstr get_remaining_times get_seapath11dh get_time_range getmat ldcodas list2matcell llgrid loadens loadhdss loadlta loadping loaduh lst_btrk lst_conf lst_hdg lst_temp mpltest opts overlapping plot_lastensq plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp plottemp_mpl plotwtcal_mpl print_attlog putnav refabs refabsbt refplot refsm rotate rotated run_adcpsect run_applyedit run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_listblocks run_loaddata run_lstconfig run_lsttemp run_matfiles run_plotter run_putnav run_rawsetup run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scandata run_setflags run_smoothr run_updategbin run_xducerxy scanping scanraw setflags smoothr startmatlab timegrid timslip ubprint update_gbin user_defined_headfunc xducerxy zapsetup 2009-08-21 17:30:38,545 DEBUG quick_adcp progdir = /home/currents/programs 2009-08-21 17:30:38,545 DEBUG quick_adcp binos = lnx 2009-08-21 17:30:38,545 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2009-08-21 17:30:38,545 DEBUG quick_setup yearbase is 2009, proc_yearbase is 2009 2009-08-21 17:30:38,545 DEBUG quick_setup numpy calculations to run: refsm 2009-08-21 17:30:38,546 DEBUG quick_setup mplplots to run: temp, nav, refl, hcorr, wtcal, btcal 2009-08-21 17:30:38,546 DEBUG quick_setup processing data logged with uhdas: 2009-08-21 17:30:38,546 DEBUG quick_setup datatype is uhdas 2009-08-21 17:30:38,546 DEBUG quick_setup pingtype is bb 2009-08-21 17:30:38,546 DEBUG quick_setup instclass is os 2009-08-21 17:30:38,547 DEBUG quick_setup no post-processing heading correction will be used 2009-08-21 17:30:38,547 DEBUG quick_setup transducer depth set in *_cfg.m file 2009-08-21 17:30:38,565 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os38'; pingtype = 'bb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'km0920',... 'cfgpath' , '/home/data/km0920/proc/os38bb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2009-08-21 17:30:38,566 DEBUG quick_setup ------- starting Matlab engine ------- 2009-08-21 17:30:38,566 DEBUG quick_setup ['/home/currents/programs/matlab'] 2009-08-21 17:30:38,569 DEBUG call_matlab starting to wait for initial prompt 2009-08-21 17:30:39,486 DEBUG call_matlab received initial prompt 2009-08-21 17:30:39,701 DEBUG quick_adcp cwd is /home/data/km0920/proc/os38bb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-08-21 17:30:39,702 DEBUG quick_adcp original fix file is a_km.gps 2009-08-21 17:30:39,702 DEBUG quick_adcp smoothed nav file is a_km_refsm.asc 2009-08-21 17:30:39,703 DEBUG quick_asect extracting matlab files for os38, bb pings 2009-08-21 17:30:39,712 DEBUG quick_subs found 46 files using wildcard expansion from "/home/data/km0920/raw/os38/*.raw" 2009-08-21 17:30:39,712 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/km0920/raw/os38/km2009_229_01740.raw /home/data/km0920/raw/os38/km2009_229_01835.raw /home/data/km0920/raw/os38/km2009_229_07200.raw /home/data/km0920/raw/os38/km2009_229_14400.raw /home/data/km0920/raw/os38/km2009_229_21600.raw /home/data/km0920/raw/os38/km2009_229_28800.raw /home/data/km0920/raw/os38/km2009_229_36000.raw /home/data/km0920/raw/os38/km2009_229_43200.raw /home/data/km0920/raw/os38/km2009_229_50400.raw /home/data/km0920/raw/os38/km2009_229_57600.raw /home/data/km0920/raw/os38/km2009_229_64800.raw /home/data/km0920/raw/os38/km2009_229_72000.raw /home/data/km0920/raw/os38/km2009_229_79200.raw /home/data/km0920/raw/os38/km2009_230_00000.raw /home/data/km0920/raw/os38/km2009_230_07200.raw /home/data/km0920/raw/os38/km2009_230_14400.raw /home/data/km0920/raw/os38/km2009_230_21600.raw /home/data/km0920/raw/os38/km2009_230_28800.raw /home/data/km0920/raw/os38/km2009_230_36000.raw /home/data/km0920/raw/os38/km2009_230_43200.raw /home/data/km0920/raw/os38/km2009_230_50400.raw /home/data/km0920/raw/os38/km2009_230_57600.raw /home/data/km0920/raw/os38/km2009_230_64800.raw /home/data/km0920/raw/os38/km2009_230_72000.raw /home/data/km0920/raw/os38/km2009_230_79200.raw /home/data/km0920/raw/os38/km2009_231_00000.raw /home/data/km0920/raw/os38/km2009_231_07200.raw /home/data/km0920/raw/os38/km2009_231_14400.raw /home/data/km0920/raw/os38/km2009_231_21600.raw /home/data/km0920/raw/os38/km2009_231_28800.raw /home/data/km0920/raw/os38/km2009_231_36000.raw /home/data/km0920/raw/os38/km2009_231_43200.raw /home/data/km0920/raw/os38/km2009_231_50400.raw /home/data/km0920/raw/os38/km2009_231_57600.raw /home/data/km0920/raw/os38/km2009_231_64800.raw /home/data/km0920/raw/os38/km2009_231_72000.raw /home/data/km0920/raw/os38/km2009_231_79200.raw /home/data/km0920/raw/os38/km2009_232_00000.raw /home/data/km0920/raw/os38/km2009_232_07200.raw /home/data/km0920/raw/os38/km2009_232_14400.raw /home/data/km0920/raw/os38/km2009_232_21600.raw /home/data/km0920/raw/os38/km2009_232_28800.raw /home/data/km0920/raw/os38/km2009_232_36000.raw /home/data/km0920/raw/os38/km2009_232_43200.raw /home/data/km0920/raw/os38/km2009_232_50400.raw /home/data/km0920/raw/os38/km2009_232_57600.raw 2009-08-21 17:30:39,713 DEBUG quick_adcp LASTFILES invoked. using only 46 files from end of filelist 2009-08-21 17:30:39,713 DEBUG quick_adcp using delblks = 1 2009-08-21 17:30:39,713 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/km0920/raw/os38/km2009_229_01740.raw /home/data/km0920/raw/os38/km2009_229_01835.raw /home/data/km0920/raw/os38/km2009_229_07200.raw /home/data/km0920/raw/os38/km2009_229_14400.raw /home/data/km0920/raw/os38/km2009_229_21600.raw /home/data/km0920/raw/os38/km2009_229_28800.raw /home/data/km0920/raw/os38/km2009_229_36000.raw /home/data/km0920/raw/os38/km2009_229_43200.raw /home/data/km0920/raw/os38/km2009_229_50400.raw /home/data/km0920/raw/os38/km2009_229_57600.raw /home/data/km0920/raw/os38/km2009_229_64800.raw /home/data/km0920/raw/os38/km2009_229_72000.raw /home/data/km0920/raw/os38/km2009_229_79200.raw /home/data/km0920/raw/os38/km2009_230_00000.raw /home/data/km0920/raw/os38/km2009_230_07200.raw /home/data/km0920/raw/os38/km2009_230_14400.raw /home/data/km0920/raw/os38/km2009_230_21600.raw /home/data/km0920/raw/os38/km2009_230_28800.raw /home/data/km0920/raw/os38/km2009_230_36000.raw /home/data/km0920/raw/os38/km2009_230_43200.raw /home/data/km0920/raw/os38/km2009_230_50400.raw /home/data/km0920/raw/os38/km2009_230_57600.raw /home/data/km0920/raw/os38/km2009_230_64800.raw /home/data/km0920/raw/os38/km2009_230_72000.raw /home/data/km0920/raw/os38/km2009_230_79200.raw /home/data/km0920/raw/os38/km2009_231_00000.raw /home/data/km0920/raw/os38/km2009_231_07200.raw /home/data/km0920/raw/os38/km2009_231_14400.raw /home/data/km0920/raw/os38/km2009_231_21600.raw /home/data/km0920/raw/os38/km2009_231_28800.raw /home/data/km0920/raw/os38/km2009_231_36000.raw /home/data/km0920/raw/os38/km2009_231_43200.raw /home/data/km0920/raw/os38/km2009_231_50400.raw /home/data/km0920/raw/os38/km2009_231_57600.raw /home/data/km0920/raw/os38/km2009_231_64800.raw /home/data/km0920/raw/os38/km2009_231_72000.raw /home/data/km0920/raw/os38/km2009_231_79200.raw /home/data/km0920/raw/os38/km2009_232_00000.raw /home/data/km0920/raw/os38/km2009_232_07200.raw /home/data/km0920/raw/os38/km2009_232_14400.raw /home/data/km0920/raw/os38/km2009_232_21600.raw /home/data/km0920/raw/os38/km2009_232_28800.raw /home/data/km0920/raw/os38/km2009_232_36000.raw /home/data/km0920/raw/os38/km2009_232_43200.raw /home/data/km0920/raw/os38/km2009_232_50400.raw /home/data/km0920/raw/os38/km2009_232_57600.raw 2009-08-21 17:30:39,715 DEBUG quick_adcp Fri Aug 21 17:30:39 2009 running quick_adcp.py as follows: --cntfile /home/data/km0920/proc/os38bb/os38bb_qpy.cnt ----- adcpsect variables ------ afilebase a_km cbasename contour dbname a_km dbpath ../adcpdb deeper_boundaries [100, 150, 200, 250, 300, 350, 400, 450, 500, 550, 600, 650, 700, 750, 800, 850, 900, 950, 1000, 1050, 1100, 1150, 1200, 1250, 1300, 1350, 1400, 1450, 1500, 1550, 1600] firstdepth 36 gridnum 80 increment 20 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2009 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.018 adjust_time 1 afilebase a_km allow_reload True auto True beamangle 30 bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase km0920 cfgpath /home/data/km0920/proc/os38bb/config cntfile /home/data/km0920/proc/os38bb/os38bb_qpy.cnt commands None cruisename km0920 data_def vmadcp.def datadir /home/data/km0920/raw/os38 datafile_glob *.raw datatype uhdas dbname a_km dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/km0920/raw/os38/km2009_229_01740.raw', '/home/data/km0920/raw/os38/km2009_229_01835.raw', '/home/data/km0920/raw/os38/km2009_229_07200.raw', '/home/data/km0920/raw/os38/km2009_229_14400.raw', '/home/data/km0920/raw/os38/km2009_229_21600.raw', '/home/data/km0920/raw/os38/km2009_229_28800.raw', '/home/data/km0920/raw/os38/km2009_229_36000.raw', '/home/data/km0920/raw/os38/km2009_229_43200.raw', '/home/data/km0920/raw/os38/km2009_229_50400.raw', '/home/data/km0920/raw/os38/km2009_229_57600.raw', '/home/data/km0920/raw/os38/km2009_229_64800.raw', '/home/data/km0920/raw/os38/km2009_229_72000.raw', '/home/data/km0920/raw/os38/km2009_229_79200.raw', '/home/data/km0920/raw/os38/km2009_230_00000.raw', '/home/data/km0920/raw/os38/km2009_230_07200.raw', '/home/data/km0920/raw/os38/km2009_230_14400.raw', '/home/data/km0920/raw/os38/km2009_230_21600.raw', '/home/data/km0920/raw/os38/km2009_230_28800.raw', '/home/data/km0920/raw/os38/km2009_230_36000.raw', '/home/data/km0920/raw/os38/km2009_230_43200.raw', '/home/data/km0920/raw/os38/km2009_230_50400.raw', '/home/data/km0920/raw/os38/km2009_230_57600.raw', '/home/data/km0920/raw/os38/km2009_230_64800.raw', '/home/data/km0920/raw/os38/km2009_230_72000.raw', '/home/data/km0920/raw/os38/km2009_230_79200.raw', '/home/data/km0920/raw/os38/km2009_231_00000.raw', '/home/data/km0920/raw/os38/km2009_231_07200.raw', '/home/data/km0920/raw/os38/km2009_231_14400.raw', '/home/data/km0920/raw/os38/km2009_231_21600.raw', '/home/data/km0920/raw/os38/km2009_231_28800.raw', '/home/data/km0920/raw/os38/km2009_231_36000.raw', '/home/data/km0920/raw/os38/km2009_231_43200.raw', '/home/data/km0920/raw/os38/km2009_231_50400.raw', '/home/data/km0920/raw/os38/km2009_231_57600.raw', '/home/data/km0920/raw/os38/km2009_231_64800.raw', '/home/data/km0920/raw/os38/km2009_231_72000.raw', '/home/data/km0920/raw/os38/km2009_231_79200.raw', '/home/data/km0920/raw/os38/km2009_232_00000.raw', '/home/data/km0920/raw/os38/km2009_232_07200.raw', '/home/data/km0920/raw/os38/km2009_232_14400.raw', '/home/data/km0920/raw/os38/km2009_232_21600.raw', '/home/data/km0920/raw/os38/km2009_232_28800.raw', '/home/data/km0920/raw/os38/km2009_232_36000.raw', '/home/data/km0920/raw/os38/km2009_232_43200.raw', '/home/data/km0920/raw/os38/km2009_232_50400.raw', '/home/data/km0920/raw/os38/km2009_232_57600.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 36 fixfile a_km.gps hcorr_inst posmv head_func None help False hidedisplay True howto_lta False howto_ping False incremental False instclass os instname os38 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os38'; pingtype = 'bb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'km0920',... 'cfgpath' , '/home/data/km0920/proc/os38bb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 mplplots ['temp', 'nav', 'refl', 'hcorr', 'wtcal', 'btcal'] nosave_editcfg 0 npycalc ['refsm'] num_persistence 24 numbins 128 orig_fixfile a_km.gps overview False pgmin 50 ping_headcorr True pingtype bb post_headcorr False printformats png proc_yearbase 2009 procdir os38bb progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/km0920/raw/os38/km2009_229_01740.raw', '/home/data/km0920/raw/os38/km2009_229_01835.raw', '/home/data/km0920/raw/os38/km2009_229_07200.raw', '/home/data/km0920/raw/os38/km2009_229_14400.raw', '/home/data/km0920/raw/os38/km2009_229_21600.raw', '/home/data/km0920/raw/os38/km2009_229_28800.raw', '/home/data/km0920/raw/os38/km2009_229_36000.raw', '/home/data/km0920/raw/os38/km2009_229_43200.raw', '/home/data/km0920/raw/os38/km2009_229_50400.raw', '/home/data/km0920/raw/os38/km2009_229_57600.raw', '/home/data/km0920/raw/os38/km2009_229_64800.raw', '/home/data/km0920/raw/os38/km2009_229_72000.raw', '/home/data/km0920/raw/os38/km2009_229_79200.raw', '/home/data/km0920/raw/os38/km2009_230_00000.raw', '/home/data/km0920/raw/os38/km2009_230_07200.raw', '/home/data/km0920/raw/os38/km2009_230_14400.raw', '/home/data/km0920/raw/os38/km2009_230_21600.raw', '/home/data/km0920/raw/os38/km2009_230_28800.raw', '/home/data/km0920/raw/os38/km2009_230_36000.raw', '/home/data/km0920/raw/os38/km2009_230_43200.raw', '/home/data/km0920/raw/os38/km2009_230_50400.raw', '/home/data/km0920/raw/os38/km2009_230_57600.raw', '/home/data/km0920/raw/os38/km2009_230_64800.raw', '/home/data/km0920/raw/os38/km2009_230_72000.raw', '/home/data/km0920/raw/os38/km2009_230_79200.raw', '/home/data/km0920/raw/os38/km2009_231_00000.raw', '/home/data/km0920/raw/os38/km2009_231_07200.raw', '/home/data/km0920/raw/os38/km2009_231_14400.raw', '/home/data/km0920/raw/os38/km2009_231_21600.raw', '/home/data/km0920/raw/os38/km2009_231_28800.raw', '/home/data/km0920/raw/os38/km2009_231_36000.raw', '/home/data/km0920/raw/os38/km2009_231_43200.raw', '/home/data/km0920/raw/os38/km2009_231_50400.raw', '/home/data/km0920/raw/os38/km2009_231_57600.raw', '/home/data/km0920/raw/os38/km2009_231_64800.raw', '/home/data/km0920/raw/os38/km2009_231_72000.raw', '/home/data/km0920/raw/os38/km2009_231_79200.raw', '/home/data/km0920/raw/os38/km2009_232_00000.raw', '/home/data/km0920/raw/os38/km2009_232_07200.raw', '/home/data/km0920/raw/os38/km2009_232_14400.raw', '/home/data/km0920/raw/os38/km2009_232_21600.raw', '/home/data/km0920/raw/os38/km2009_232_28800.raw', '/home/data/km0920/raw/os38/km2009_232_36000.raw', '/home/data/km0920/raw/os38/km2009_232_43200.raw', '/home/data/km0920/raw/os38/km2009_232_50400.raw', '/home/data/km0920/raw/os38/km2009_232_57600.raw'] setup_info False skip_avg True smfile a_km_refsm.asc steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2009 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-08-21 17:30:39,715 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2009-08-21 17:30:39,715 DEBUG quick_run scanning files for time ranges... 2009-08-21 17:30:39,716 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb/scan 2009-08-21 17:30:39,716 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/scan 2009-08-21 17:30:39,716 DEBUG quick_setup running python command "scanraw" 2009-08-21 17:30:39,716 DEBUG call_matlab --> clear all 2009-08-21 17:30:39,723 DEBUG call_matlab <-- >> 2009-08-21 17:30:39,723 DEBUG call_matlab --> close all 2009-08-21 17:30:39,783 DEBUG call_matlab <-- >> 2009-08-21 17:30:39,784 DEBUG call_matlab --> cd /home/data/km0920/proc/os38bb/scan 2009-08-21 17:30:39,786 DEBUG call_matlab <-- >> 2009-08-21 17:30:39,787 DEBUG call_matlab --> scan_tmp 2009-08-21 17:30:40,713 DEBUG call_matlab <-- getting config files from "/home/data/km0920/proc/os38bb/config" running "km0920_cfg.m" running "km0920_proc.m" writing scan info to a_km.scn >> 2009-08-21 17:30:40,713 DEBUG quick_run writing time range from a_km.scn to a_km.tr 2009-08-21 17:30:40,713 DEBUG quick_run getting scan time range 2009-08-21 17:30:40,714 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:40,714 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/scan 2009-08-21 17:30:40,714 DEBUG quick_setup running python command "get_time_range" 2009-08-21 17:30:40,714 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-21 17:30:40,716 DEBUG quick_subs extracting time range 2009-08-21 17:30:40,718 DEBUG quick_subs start_end_time 2009/08/18 00:29:06 to 2009/08/21 17:30:17 2009-08-21 17:30:40,718 DEBUG quick_subs dd0: 229.020208 dd1: 232.729363 2009-08-21 17:30:40,719 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/km0920/proc/os38bb 2009-08-21 17:30:40,719 DEBUG quick_adcp looking for database with adcpdb/a_km*.blk 2009-08-21 17:30:40,720 DEBUG quick_adcp database found: listing blocks 2009-08-21 17:30:40,721 DEBUG quick_subs removing a_kmdir.blk 2009-08-21 17:30:40,721 DEBUG quick_subs about to run mkblkdir 2009-08-21 17:30:40,722 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-08-21 17:30:40,722 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-08-21 17:30:40,737 DEBUG quick_subs database passes. 2009-08-21 17:30:40,737 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-08-21 17:30:40,737 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:40,738 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/adcpdb 2009-08-21 17:30:40,738 DEBUG quick_setup running python command "get_time_range" 2009-08-21 17:30:40,738 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-21 17:30:40,739 DEBUG quick_subs extracting time range 2009-08-21 17:30:40,739 DEBUG quick_subs start_end_time 2009/08/18 00:35:41 to 2009/08/21 16:59:14 2009-08-21 17:30:40,739 DEBUG quick_subs dd0: 229.024780 dd1: 232.707801 2009-08-21 17:30:40,740 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-08-21 17:30:40,740 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:40,740 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/adcpdb 2009-08-21 17:30:40,741 DEBUG quick_setup running python command "get_time_range" 2009-08-21 17:30:40,741 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-21 17:30:40,741 DEBUG quick_subs extracting time range 2009-08-21 17:30:40,742 DEBUG quick_subs start_end_time 2009/08/18 00:35:41 to 2009/08/21 16:59:14 2009-08-21 17:30:40,742 DEBUG quick_subs dd0: 229.024780 dd1: 232.707801 2009-08-21 17:30:40,743 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2009-08-21 17:30:40,743 DEBUG quick_adcp origdb_time_range is 2009/08/18 00:35:41 to 2009/08/21 16:59:14 2009-08-21 17:30:40,743 DEBUG quick_adcp (229.024780 to 232.707801) 2009-08-21 17:30:40,744 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2009-08-21 17:30:40,744 DEBUG quick_subs getting current (remaining after deletion) database times 2009-08-21 17:30:40,745 DEBUG quick_subs ['adcpdb/a_km003.blk', 'adcpdb/a_kmdir.blk', 'adcpdb/a_km002.blk', 'adcpdb/a_km008.blk', 'adcpdb/a_km001.blk', 'adcpdb/a_km007.blk', 'adcpdb/a_km004.blk', 'adcpdb/a_km005.blk', 'adcpdb/a_km006.blk'] 2009-08-21 17:30:40,745 DEBUG quick_subs length is 9 2009-08-21 17:30:40,745 DEBUG quick_subs removing a_kmdir.blk 2009-08-21 17:30:40,746 DEBUG quick_subs about to run mkblkdir 2009-08-21 17:30:40,746 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-08-21 17:30:40,747 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-08-21 17:30:40,765 DEBUG quick_subs database passes. 2009-08-21 17:30:40,765 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-08-21 17:30:40,766 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:40,766 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/adcpdb 2009-08-21 17:30:40,766 DEBUG quick_setup running python command "get_time_range" 2009-08-21 17:30:40,767 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-21 17:30:40,767 DEBUG quick_subs extracting time range 2009-08-21 17:30:40,768 DEBUG quick_subs start_end_time 2009/08/18 00:35:41 to 2009/08/21 16:59:14 2009-08-21 17:30:40,768 DEBUG quick_subs dd0: 229.024780 dd1: 232.707801 2009-08-21 17:30:40,768 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-21 17:30:40,768 DEBUG quick_subs reading time range 2009-08-21 17:30:40,769 DEBUG quick_subs start_end_time 2009/08/18 00:35:41 to 2009/08/21 16:59:14 2009-08-21 17:30:40,769 DEBUG quick_subs dd0: 229.024780 dd1: 232.707801 2009-08-21 17:30:40,770 INFO quick_subs Fri Aug 21 17:30:40 2009 2009-08-21 17:30:40,770 INFO quick_subs checking database time range by listblk 2009-08-21 17:30:40,770 DEBUG quick_subs removing a_kmdir.blk 2009-08-21 17:30:40,771 DEBUG quick_subs about to run mkblkdir 2009-08-21 17:30:40,771 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-08-21 17:30:40,771 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-08-21 17:30:40,784 DEBUG quick_subs database passes. 2009-08-21 17:30:40,784 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-08-21 17:30:40,785 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:40,785 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/adcpdb 2009-08-21 17:30:40,785 DEBUG quick_setup running python command "get_time_range" 2009-08-21 17:30:40,786 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-21 17:30:40,786 DEBUG quick_subs extracting time range 2009-08-21 17:30:40,787 DEBUG quick_subs start_end_time 2009/08/18 00:35:41 to 2009/08/21 16:59:14 2009-08-21 17:30:40,787 DEBUG quick_subs dd0: 229.024780 dd1: 232.707801 2009-08-21 17:30:40,790 INFO quick_subs found line /* 0 n= 146 a_km001.blk */ 2009/08/18 00:35:41 to 2009/08/18 13:10:34 2009-08-21 17:30:40,790 INFO quick_subs found line /* 1 n= 146 a_km002.blk */ 2009/08/18 13:15:40 to 2009/08/19 01:35:07 2009-08-21 17:30:40,790 INFO quick_subs found line /* 2 n= 146 a_km003.blk */ 2009/08/19 01:40:13 to 2009/08/19 13:59:32 2009-08-21 17:30:40,790 INFO quick_subs found line /* 3 n= 146 a_km004.blk */ 2009/08/19 14:04:38 to 2009/08/20 02:24:06 2009-08-21 17:30:40,791 INFO quick_subs found line /* 4 n= 146 a_km005.blk */ 2009/08/20 02:29:12 to 2009/08/20 14:48:40 2009-08-21 17:30:40,791 INFO quick_subs found line /* 5 n= 146 a_km006.blk */ 2009/08/20 14:53:46 to 2009/08/21 03:18:11 2009-08-21 17:30:40,791 INFO quick_subs found line /* 6 n= 146 a_km007.blk */ 2009/08/21 03:23:17 to 2009/08/21 15:42:44 2009-08-21 17:30:40,792 INFO quick_subs found line /* 7 n= 15 a_km008.blk */ 2009/08/21 15:47:50 to 2009/08/21 16:59:14 2009-08-21 17:30:40,792 INFO quick_subs scan data start at 229.0202083 2009-08-21 17:30:40,792 INFO quick_subs scan time range: 2009/08/18 00:29:06 to 2009/08/21 17:30:17 2009-08-21 17:30:40,792 INFO quick_subs codasdb ends at 232.7078009 (2009/08/21 16:59:14) 2009-08-21 17:30:40,793 DEBUG quick_subs ... changed dirs, in /home/data/km0920/proc/os38bb/adcpdb 2009-08-21 17:30:40,793 DEBUG quick_subs deleting these files: ['a_km008.blk'] 2009-08-21 17:30:40,794 DEBUG quick_subs getting current (remaining after deletion) database times 2009-08-21 17:30:40,794 DEBUG quick_subs ['adcpdb/a_km003.blk', 'adcpdb/a_km002.blk', 'adcpdb/a_km001.blk', 'adcpdb/a_km007.blk', 'adcpdb/a_km004.blk', 'adcpdb/a_km005.blk', 'adcpdb/a_km006.blk'] 2009-08-21 17:30:40,795 DEBUG quick_subs length is 7 2009-08-21 17:30:40,795 DEBUG quick_subs about to run mkblkdir 2009-08-21 17:30:40,795 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-08-21 17:30:40,796 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-08-21 17:30:40,811 DEBUG quick_subs database passes. 2009-08-21 17:30:40,812 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-08-21 17:30:40,812 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:40,813 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/adcpdb 2009-08-21 17:30:40,813 DEBUG quick_setup running python command "get_time_range" 2009-08-21 17:30:40,813 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-21 17:30:40,814 DEBUG quick_subs extracting time range 2009-08-21 17:30:40,815 DEBUG quick_subs start_end_time 2009/08/18 00:35:41 to 2009/08/21 15:42:44 2009-08-21 17:30:40,815 DEBUG quick_subs dd0: 229.024780 dd1: 232.654676 2009-08-21 17:30:40,816 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-21 17:30:40,816 DEBUG quick_subs reading time range 2009-08-21 17:30:40,816 DEBUG quick_subs start_end_time 2009/08/18 00:35:41 to 2009/08/21 15:42:44 2009-08-21 17:30:40,817 DEBUG quick_subs dd0: 229.024780 dd1: 232.654676 2009-08-21 17:30:40,817 DEBUG quick_subs codas database currently goes from 2009/08/18 00:35:41 to 2009/08/21 15:42:44 2009-08-21 17:30:40,817 DEBUG quick_subs (229.024780 to 232.654676) 2009-08-21 17:30:40,818 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007 2009-08-21 17:30:40,819 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 2009-08-21 17:30:40,820 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007'] 2009-08-21 17:30:40,820 DEBUG quick_subs checked: unloaded blkstrs: ['008'] 2009-08-21 17:30:40,820 DEBUG quick_subs first unloaded file is load/ens_blk008.cmd 2009-08-21 17:30:40,821 DEBUG quick_subs data goes from 2009/08/21 15:47:50 to 2009/08/21 17:30:17 2009-08-21 17:30:40,821 DEBUG quick_subs (232.658218 to 232.729363) 2009-08-21 17:30:40,821 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/km0920/raw/os38/km2009_229_01740.raw /home/data/km0920/raw/os38/km2009_229_01835.raw /home/data/km0920/raw/os38/km2009_229_07200.raw /home/data/km0920/raw/os38/km2009_229_14400.raw /home/data/km0920/raw/os38/km2009_229_21600.raw /home/data/km0920/raw/os38/km2009_229_28800.raw /home/data/km0920/raw/os38/km2009_229_36000.raw /home/data/km0920/raw/os38/km2009_229_43200.raw /home/data/km0920/raw/os38/km2009_229_50400.raw /home/data/km0920/raw/os38/km2009_229_57600.raw /home/data/km0920/raw/os38/km2009_229_64800.raw /home/data/km0920/raw/os38/km2009_229_72000.raw /home/data/km0920/raw/os38/km2009_229_79200.raw /home/data/km0920/raw/os38/km2009_230_00000.raw /home/data/km0920/raw/os38/km2009_230_07200.raw /home/data/km0920/raw/os38/km2009_230_14400.raw /home/data/km0920/raw/os38/km2009_230_21600.raw /home/data/km0920/raw/os38/km2009_230_28800.raw /home/data/km0920/raw/os38/km2009_230_36000.raw /home/data/km0920/raw/os38/km2009_230_43200.raw /home/data/km0920/raw/os38/km2009_230_50400.raw /home/data/km0920/raw/os38/km2009_230_57600.raw /home/data/km0920/raw/os38/km2009_230_64800.raw /home/data/km0920/raw/os38/km2009_230_72000.raw /home/data/km0920/raw/os38/km2009_230_79200.raw /home/data/km0920/raw/os38/km2009_231_00000.raw /home/data/km0920/raw/os38/km2009_231_07200.raw /home/data/km0920/raw/os38/km2009_231_14400.raw /home/data/km0920/raw/os38/km2009_231_21600.raw /home/data/km0920/raw/os38/km2009_231_28800.raw /home/data/km0920/raw/os38/km2009_231_36000.raw /home/data/km0920/raw/os38/km2009_231_43200.raw /home/data/km0920/raw/os38/km2009_231_50400.raw /home/data/km0920/raw/os38/km2009_231_57600.raw /home/data/km0920/raw/os38/km2009_231_64800.raw /home/data/km0920/raw/os38/km2009_231_72000.raw /home/data/km0920/raw/os38/km2009_231_79200.raw /home/data/km0920/raw/os38/km2009_232_00000.raw /home/data/km0920/raw/os38/km2009_232_07200.raw /home/data/km0920/raw/os38/km2009_232_14400.raw /home/data/km0920/raw/os38/km2009_232_21600.raw /home/data/km0920/raw/os38/km2009_232_28800.raw /home/data/km0920/raw/os38/km2009_232_36000.raw /home/data/km0920/raw/os38/km2009_232_43200.raw /home/data/km0920/raw/os38/km2009_232_50400.raw /home/data/km0920/raw/os38/km2009_232_57600.raw 2009-08-21 17:30:40,822 INFO quick_run Fri Aug 21 17:30:40 2009 2009-08-21 17:30:40,822 INFO quick_run about to load uhdas files 2009-08-21 17:30:40,822 INFO quick_run /home/data/km0920/raw/os38/km2009_229_01740.raw /home/data/km0920/raw/os38/km2009_229_01835.raw /home/data/km0920/raw/os38/km2009_229_07200.raw /home/data/km0920/raw/os38/km2009_229_14400.raw /home/data/km0920/raw/os38/km2009_229_21600.raw /home/data/km0920/raw/os38/km2009_229_28800.raw /home/data/km0920/raw/os38/km2009_229_36000.raw /home/data/km0920/raw/os38/km2009_229_43200.raw /home/data/km0920/raw/os38/km2009_229_50400.raw /home/data/km0920/raw/os38/km2009_229_57600.raw /home/data/km0920/raw/os38/km2009_229_64800.raw /home/data/km0920/raw/os38/km2009_229_72000.raw /home/data/km0920/raw/os38/km2009_229_79200.raw /home/data/km0920/raw/os38/km2009_230_00000.raw /home/data/km0920/raw/os38/km2009_230_07200.raw /home/data/km0920/raw/os38/km2009_230_14400.raw /home/data/km0920/raw/os38/km2009_230_21600.raw /home/data/km0920/raw/os38/km2009_230_28800.raw /home/data/km0920/raw/os38/km2009_230_36000.raw /home/data/km0920/raw/os38/km2009_230_43200.raw /home/data/km0920/raw/os38/km2009_230_50400.raw /home/data/km0920/raw/os38/km2009_230_57600.raw /home/data/km0920/raw/os38/km2009_230_64800.raw /home/data/km0920/raw/os38/km2009_230_72000.raw /home/data/km0920/raw/os38/km2009_230_79200.raw /home/data/km0920/raw/os38/km2009_231_00000.raw /home/data/km0920/raw/os38/km2009_231_07200.raw /home/data/km0920/raw/os38/km2009_231_14400.raw /home/data/km0920/raw/os38/km2009_231_21600.raw /home/data/km0920/raw/os38/km2009_231_28800.raw /home/data/km0920/raw/os38/km2009_231_36000.raw /home/data/km0920/raw/os38/km2009_231_43200.raw /home/data/km0920/raw/os38/km2009_231_50400.raw /home/data/km0920/raw/os38/km2009_231_57600.raw /home/data/km0920/raw/os38/km2009_231_64800.raw /home/data/km0920/raw/os38/km2009_231_72000.raw /home/data/km0920/raw/os38/km2009_231_79200.raw /home/data/km0920/raw/os38/km2009_232_00000.raw /home/data/km0920/raw/os38/km2009_232_07200.raw /home/data/km0920/raw/os38/km2009_232_14400.raw /home/data/km0920/raw/os38/km2009_232_21600.raw /home/data/km0920/raw/os38/km2009_232_28800.raw /home/data/km0920/raw/os38/km2009_232_36000.raw /home/data/km0920/raw/os38/km2009_232_43200.raw /home/data/km0920/raw/os38/km2009_232_50400.raw /home/data/km0920/raw/os38/km2009_232_57600.raw 2009-08-21 17:30:40,823 DEBUG quick_setup load/ldcodas.tmp exists 2009-08-21 17:30:40,823 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:40,823 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/load 2009-08-21 17:30:40,823 DEBUG quick_setup running python command "ldcodas" 2009-08-21 17:30:40,824 DEBUG quick_subs in /home/data/km0920/proc/os38bb/load 2009-08-21 17:30:40,824 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007'] 2009-08-21 17:30:40,826 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008'] 2009-08-21 17:30:40,827 DEBUG quick_subs starttime is 2009/08/21 15:47:50 2009-08-21 17:30:40,827 DEBUG quick_subs RESETTING thisload_time_range 2009-08-21 17:30:40,827 DEBUG quick_subs time range of data to be loaded: 2009/08/21 15:47:50 to 2009/08/21 17:30:17 2009-08-21 17:30:40,827 DEBUG quick_subs data startdd 232.658218 data enddd 232.729363 2009-08-21 17:30:40,828 DEBUG quick_subs about to load from these cmd files ['ens_blk008.cmd'] 2009-08-21 17:30:40,828 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_km DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2009 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk008.cmd 2009-08-21 17:30:40,828 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2009-08-21 17:30:40,845 DEBUG quick_subs removing a_kmdir.blk 2009-08-21 17:30:40,845 DEBUG quick_subs about to run mkblkdir 2009-08-21 17:30:40,846 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-08-21 17:30:40,846 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-08-21 17:30:40,861 DEBUG quick_subs database passes. 2009-08-21 17:30:40,861 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-08-21 17:30:40,862 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:40,862 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/adcpdb 2009-08-21 17:30:40,862 DEBUG quick_setup running python command "get_time_range" 2009-08-21 17:30:40,863 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-21 17:30:40,863 DEBUG quick_subs extracting time range 2009-08-21 17:30:40,864 DEBUG quick_subs start_end_time 2009/08/18 00:35:41 to 2009/08/21 17:29:50 2009-08-21 17:30:40,864 DEBUG quick_subs dd0: 229.024780 dd1: 232.729051 2009-08-21 17:30:40,864 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-08-21 17:30:40,864 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:40,865 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/adcpdb 2009-08-21 17:30:40,865 DEBUG quick_setup running python command "get_time_range" 2009-08-21 17:30:40,865 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-08-21 17:30:40,866 DEBUG quick_subs extracting time range 2009-08-21 17:30:40,866 DEBUG quick_subs start_end_time 2009/08/18 00:35:41 to 2009/08/21 17:29:50 2009-08-21 17:30:40,866 DEBUG quick_subs dd0: 229.024780 dd1: 232.729051 2009-08-21 17:30:40,867 DEBUG quick_adcp loaded_time_range is 2009/08/18 00:35:41 to 2009/08/21 17:29:50 2009-08-21 17:30:40,867 DEBUG quick_adcp (229.024780 to 232.729051) 2009-08-21 17:30:40,868 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:40,868 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/adcpdb 2009-08-21 17:30:40,868 DEBUG quick_setup running python command "lst_conf" 2009-08-21 17:30:40,868 DEBUG quick_subs dbname: a_km output: a_km.cnh time_ranges: all 2009-08-21 17:30:40,869 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2009-08-21 17:30:40,889 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2009-08-21 17:30:40,890 DEBUG quick_run executing commands from /home/data/km0920/proc/os38bb/edit 2009-08-21 17:30:40,890 DEBUG quick_run setup.m exists. not replacing 2009-08-21 17:30:40,890 DEBUG quick_run asetup.m exists. not replacing 2009-08-21 17:30:40,890 DEBUG quick_run aflagit_setup.m exists. not replacing 2009-08-21 17:30:40,891 DEBUG quick_run ------------ step 4: run setflags ------------- 2009-08-21 17:30:40,891 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:40,891 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/edit 2009-08-21 17:30:40,891 DEBUG quick_setup running python command "setflags" 2009-08-21 17:30:40,892 DEBUG quick_subs dbname: ../adcpdb/a_km pg_min: 50 set_range_bit time_ranges: all 2009-08-21 17:30:40,892 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-08-21 17:30:40,922 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2009-08-21 17:30:40,922 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:40,923 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/nav 2009-08-21 17:30:40,923 DEBUG quick_setup running python command "catnav" 2009-08-21 17:30:40,926 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2009-08-21 17:30:40,926 DEBUG quick_run hcorr_inst is posmv 2009-08-21 17:30:40,926 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2009-08-21 17:30:40,926 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:40,927 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/cal/rotate 2009-08-21 17:30:40,927 DEBUG quick_setup running python command "lst_hdg" 2009-08-21 17:30:40,927 DEBUG quick_subs dbname: ../../adcpdb/a_km output: scn.hdg step_size= 1 year_base= 2009 time_ranges: all 2009-08-21 17:30:40,928 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2009-08-21 17:30:40,959 DEBUG quick_mpl Starting plot: hcorr 2009-08-21 17:30:41,004 DEBUG quick_mplplots found 3.704270 days of data 2009-08-21 17:30:41,005 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2009-08-21 17:30:41,005 DEBUG quick_mplplots printing 1 pages 2009-08-21 17:30:42,222 DEBUG quick_mpl Ending plot: hcorr 2009-08-21 17:30:42,222 DEBUG quick_run ------------ step 7: rotate ------------- 2009-08-21 17:30:42,223 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:42,223 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/cal/rotate 2009-08-21 17:30:42,223 DEBUG quick_setup running python command "rotated" 2009-08-21 17:30:42,247 DEBUG quick_subs last rotated time from log file: 2009/08/21 16:59:41 2009-08-21 17:30:42,248 DEBUG quick_subs time range of currently loaded data: 2009/08/18 00:35:41 to 2009/08/21 17:29:50 2009-08-21 17:30:42,248 DEBUG quick_subs (229.024780 to 232.729051) 2009-08-21 17:30:42,249 DEBUG quick_setup cal/rotate/rotate.tmp exists 2009-08-21 17:30:42,249 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:42,249 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/cal/rotate 2009-08-21 17:30:42,249 DEBUG quick_setup running python command "rotate" 2009-08-21 17:30:42,250 DEBUG quick_subs DB_NAME: ../../adcpdb/a_km LOG_FILE: rotate.log TIME_RANGE: 2009/08/21 15:47:50 to 2009/08/21 17:30:17 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2009 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2009-08-21 17:30:42,250 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2009-08-21 17:30:42,259 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-08-21 17:30:42,260 DEBUG quick_setup nav/as_nav.tmp exists 2009-08-21 17:30:42,260 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:42,261 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/nav 2009-08-21 17:30:42,261 DEBUG quick_setup running python command "as_nav" 2009-08-21 17:30:42,261 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/08/18 00:35:41 to 2009/08/21 17:29:50 /* the whole time range */ 2009-08-21 17:30:42,262 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-08-21 17:30:42,308 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-08-21 17:30:42,308 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:42,308 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/nav 2009-08-21 17:30:42,309 DEBUG quick_setup running python command "refabs" 2009-08-21 17:30:42,309 DEBUG quick_subs fix_file_type: simple reference_file: a_km.nav fix_file: a_km.gps output: a_km.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-08-21 17:30:42,309 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-08-21 17:30:42,345 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-08-21 17:30:42,346 DEBUG quick_setup nav/smoothr.tmp exists 2009-08-21 17:30:42,346 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:42,346 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/nav 2009-08-21 17:30:42,346 DEBUG quick_setup running python command "smoothr" 2009-08-21 17:30:42,347 DEBUG quick_subs reference_file: a_km.nav refabs_output: a_km.ref output: a_km.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-08-21 17:30:42,347 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-08-21 17:30:42,515 DEBUG quick_npy Starting: refsm 2009-08-21 17:30:42,618 INFO nav dtmin = -0.50 dtmax = 0.50 2009-08-21 17:30:42,803 DEBUG quick_npy Ending: refsm 2009-08-21 17:30:42,804 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-08-21 17:30:42,804 DEBUG quick_setup nav/putnav.tmp exists 2009-08-21 17:30:42,804 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:42,804 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/nav 2009-08-21 17:30:42,804 DEBUG quick_setup running python command "putnav" 2009-08-21 17:30:42,805 DEBUG quick_subs dbname: ../adcpdb/a_km position_file: a_km_refsm.asc year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-08-21 17:30:42,805 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-08-21 17:30:42,841 DEBUG quick_mpl Starting plot: nav 2009-08-21 17:30:43,544 DEBUG quick_mpl Ending plot: nav 2009-08-21 17:30:43,544 DEBUG quick_mpl Starting plot: refl 2009-08-21 17:30:43,614 DEBUG quick_mplplots found 3.700728 days of data 2009-08-21 17:30:43,614 DEBUG quick_mplplots start day is 229.000000 2009-08-21 17:30:43,614 DEBUG quick_mplplots figures with 2.000000 days per page 2009-08-21 17:30:43,614 DEBUG quick_mplplots printing 2 pages 2009-08-21 17:30:43,615 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2009-08-21 17:30:43,615 INFO quick_mplplots startdd is 229.0 2009-08-21 17:30:43,615 INFO quick_mplplots dt is 2.0 2009-08-21 17:30:45,112 DEBUG quick_mpl Ending plot: refl 2009-08-21 17:30:45,112 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2009-08-21 17:30:45,112 DEBUG quick_run find profile flags ------------ *** ------------- 2009-08-21 17:30:45,113 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:45,113 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/edit 2009-08-21 17:30:45,113 DEBUG quick_setup running python command "aedit" 2009-08-21 17:30:46,745 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2009-08-21 17:30:46,746 DEBUG quick_run starting in: /home/data/km0920/proc/os38bb 2009-08-21 17:30:46,746 DEBUG quick_run executing commands from: edit 2009-08-21 17:30:46,750 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_km abottom_tmp.asc 2009-08-21 17:30:46,758 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_km abadprf_tmp.asc 2009-08-21 17:30:46,773 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_km abadbin_tmp.asc 2009-08-21 17:30:46,783 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_km 30 2009-08-21 17:30:46,791 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-08-21 17:30:46,829 DEBUG quick_run changing directories back to /home/data/km0920/proc/os38bb 2009-08-21 17:30:46,829 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2009-08-21 17:30:46,830 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-08-21 17:30:46,830 DEBUG quick_setup nav/as_nav.tmp exists 2009-08-21 17:30:46,830 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:46,830 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/nav 2009-08-21 17:30:46,831 DEBUG quick_setup running python command "as_nav" 2009-08-21 17:30:46,831 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/08/18 00:35:41 to 2009/08/21 17:29:50 /* the whole time range */ 2009-08-21 17:30:46,832 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-08-21 17:30:46,879 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-08-21 17:30:46,879 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:46,880 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/nav 2009-08-21 17:30:46,880 DEBUG quick_setup running python command "refabs" 2009-08-21 17:30:46,880 DEBUG quick_subs fix_file_type: simple reference_file: a_km.nav fix_file: a_km.gps output: a_km.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-08-21 17:30:46,881 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-08-21 17:30:46,920 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-08-21 17:30:46,921 DEBUG quick_setup nav/smoothr.tmp exists 2009-08-21 17:30:46,921 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:46,921 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/nav 2009-08-21 17:30:46,922 DEBUG quick_setup running python command "smoothr" 2009-08-21 17:30:46,922 DEBUG quick_subs reference_file: a_km.nav refabs_output: a_km.ref output: a_km.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-08-21 17:30:46,922 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-08-21 17:30:47,088 DEBUG quick_npy Starting: refsm 2009-08-21 17:30:47,208 INFO nav dtmin = -0.50 dtmax = 0.50 2009-08-21 17:30:47,382 DEBUG quick_npy Ending: refsm 2009-08-21 17:30:47,382 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-08-21 17:30:47,383 DEBUG quick_setup nav/putnav.tmp exists 2009-08-21 17:30:47,383 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:47,383 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/nav 2009-08-21 17:30:47,384 DEBUG quick_setup running python command "putnav" 2009-08-21 17:30:47,384 DEBUG quick_subs dbname: ../adcpdb/a_km position_file: a_km_refsm.asc year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-08-21 17:30:47,384 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-08-21 17:30:47,436 DEBUG quick_mpl Starting plot: nav 2009-08-21 17:30:48,223 DEBUG quick_mpl Ending plot: nav 2009-08-21 17:30:48,224 DEBUG quick_mpl Starting plot: refl 2009-08-21 17:30:48,291 DEBUG quick_mplplots found 3.700728 days of data 2009-08-21 17:30:48,292 DEBUG quick_mplplots start day is 229.000000 2009-08-21 17:30:48,292 DEBUG quick_mplplots figures with 2.000000 days per page 2009-08-21 17:30:48,292 DEBUG quick_mplplots printing 2 pages 2009-08-21 17:30:48,292 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2009-08-21 17:30:48,292 INFO quick_mplplots startdd is 229.0 2009-08-21 17:30:48,292 INFO quick_mplplots dt is 2.0 2009-08-21 17:30:49,806 DEBUG quick_mpl Ending plot: refl 2009-08-21 17:30:49,807 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2009-08-21 17:30:49,807 DEBUG quick_setup edit/lst_temp.tmp exists 2009-08-21 17:30:49,807 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:49,807 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/edit 2009-08-21 17:30:49,808 DEBUG quick_setup running python command "lst_temp" 2009-08-21 17:30:49,808 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km.tem step_size= 1 year_base= 2009 time_ranges: all 2009-08-21 17:30:49,808 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2009-08-21 17:30:49,829 DEBUG quick_mpl Starting plot: temp 2009-08-21 17:30:49,852 DEBUG quick_mplplots plotting 1043 points 2009-08-21 17:30:50,412 DEBUG quick_mpl Ending plot: temp 2009-08-21 17:30:50,412 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2009-08-21 17:30:50,413 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2009-08-21 17:30:50,413 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:50,413 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/cal/botmtrk 2009-08-21 17:30:50,413 DEBUG quick_setup running python command "lst_btrk" 2009-08-21 17:30:50,414 DEBUG quick_subs dbname: ../../adcpdb/a_km output: a_km.btm step_size= 1 year_base= 2009 time_ranges: 2009/08/18 00:35:41 to 2009/08/21 17:29:50 /* whole time range */ 2009-08-21 17:30:50,414 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2009-08-21 17:30:50,424 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2009-08-21 17:30:50,425 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:50,425 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/cal/botmtrk 2009-08-21 17:30:50,425 DEBUG quick_setup running python command "refabsbt" 2009-08-21 17:30:50,426 DEBUG quick_subs fix_file_type: simple reference_file: a_km.btm fix_file: ../../nav/a_km.gps output: a_km.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 60 2009-08-21 17:30:50,426 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2009-08-21 17:30:50,432 DEBUG quick_mpl Starting plot: btcal 2009-08-21 17:30:50,433 DEBUG quick_mplplots No data in a_km.btm 2009-08-21 17:30:50,434 DEBUG quick_mplplots Returning from Btplot with no output 2009-08-21 17:30:50,434 DEBUG quick_mpl Ending plot: btcal 2009-08-21 17:30:50,434 DEBUG quick_setup nav/as_nav.tmp exists 2009-08-21 17:30:50,434 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:50,435 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/nav 2009-08-21 17:30:50,435 DEBUG quick_setup running python command "as_nav" 2009-08-21 17:30:50,435 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/08/18 00:35:41 to 2009/08/21 17:29:50 /* the whole time range */ 2009-08-21 17:30:50,435 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-08-21 17:30:50,469 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2009-08-21 17:30:50,469 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:50,469 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/cal/watertrk 2009-08-21 17:30:50,470 DEBUG quick_setup running python command "timslip" 2009-08-21 17:30:50,470 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_km.gps reference_file: ../../nav/a_km.nav output_file: a_km_7.cal year_base= 2009 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2009-08-21 17:30:50,470 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2009-08-21 17:30:50,486 DEBUG quick_mpl Starting plot: wtcal 2009-08-21 17:30:50,490 DEBUG quick_mplplots Found 35 calibration points 2009-08-21 17:30:52,918 DEBUG quick_mpl Ending plot: wtcal 2009-08-21 17:30:52,919 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2009-08-21 17:30:52,919 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:52,920 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/vector 2009-08-21 17:30:52,921 DEBUG quick_setup running python command "timegrid" 2009-08-21 17:30:52,921 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_km.tmp 2009-08-21 17:30:52,928 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:52,928 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/vector 2009-08-21 17:30:52,928 DEBUG quick_setup running python command "as_vect" 2009-08-21 17:30:52,929 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2009-08-21 17:30:52,974 DEBUG quick_asect done making vector matfiles 2009-08-21 17:30:52,974 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:52,974 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/contour 2009-08-21 17:30:52,975 DEBUG quick_setup running python command "timegrid" 2009-08-21 17:30:52,975 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_km.tmp 2009-08-21 17:30:52,983 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:52,983 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/contour 2009-08-21 17:30:52,983 DEBUG quick_setup running python command "as_cont" 2009-08-21 17:30:52,984 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2009-08-21 17:30:53,046 DEBUG quick_setup starting in /home/data/km0920/proc/os38bb 2009-08-21 17:30:53,048 DEBUG quick_setup executing commands from /home/data/km0920/proc/os38bb/contour 2009-08-21 17:30:53,049 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_km 2009-08-21 17:30:53,199 DEBUG quick_asect done running getmat with "allbins" 2009-08-21 17:30:53,254 INFO root copying NOFIG to /home/adcp/www/figures/os38bb_hcorr_plot.png 2009-08-21 17:30:53,255 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os38bb_hcorr_plot_thumb.png 2009-08-21 17:30:53,255 DEBUG root matfile is contour/contour_uv.mat 2009-08-21 17:30:53,258 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os38bb_cont_uv.mat 2009-08-21 17:30:53,258 DEBUG root matfile is vector/vector_uv.mat 2009-08-21 17:30:53,259 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os38bb_vect_uv.mat 2009-08-21 17:30:53,259 DEBUG root matfile is contour/contour_xy.mat 2009-08-21 17:30:53,259 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os38bb_cont_xy.mat 2009-08-21 17:30:53,260 DEBUG root matfile is vector/vector_xy.mat 2009-08-21 17:30:53,260 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os38bb_vect_xy.mat 2009-08-21 17:30:53,260 DEBUG root about to copy file edit/a_km.tem to /home/adcp/www/data/os38bb_temp.asc 2009-08-21 17:30:53,261 INFO root copying edit/a_km.tem to /home/adcp/www/data/os38bb_temp.asc 2009-08-21 17:30:53,261 INFO root Ending quick_adcp.py 2009-08-21 17:30:53,311 DEBUG quick_setup killed matlab engine