2009-07-21 17:00:11,803 DEBUG root about to write control file parameters to --yearbase 2009 --pingtype bb --cfgbase km0917 --cruisename km0917 --instclass wh --instname wh300 --dbname a_km --datatype uhdas --datadir /home/data/km0917/raw/wh300 --cfgpath /home/data/km0917/proc/wh300/config --ens_len 120 --ping_headcorr --hcorr_inst posmv --use_topo4edit ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --acc_heading_cutoff 0.018000 --npycalc all --mplplots all 2009-07-21 17:00:11,803 DEBUG quick_adcp sys.argv = /home/currents/programs/uhdas/scripts/run_quick.py -d wh300 --npycalc all --mplplots all 2009-07-21 17:00:11,806 DEBUG quick_adcp ------processor dictionary:------ __doc__ __init__ __module__ adcpcal aedit aflagit_setup as_cont as_nav as_vect asetup ashrot btcaluv catnav check_opts cleanup copy_ensfile ddtime def_qlist get_asvars get_cmd_timerange get_data2load_timerange get_filelist get_gyrodh get_headcorrstats get_lstblk_tr get_matcfgstr get_remaining_times get_seapath11dh get_time_range getmat ldcodas list2matcell llgrid loadens loadhdss loadlta loadping loaduh lst_btrk lst_conf lst_hdg lst_temp mpltest opts overlapping plot_lastensq plotbtcal_mpl plothcorr_mpl plotnav_mpl plotrefl_mpl plottemp plottemp_mpl plotwtcal_mpl print_attlog putnav refabs refabsbt refplot refsm rotate rotated run_adcpsect run_applyedit run_calc run_calib run_editsetup run_findpflags run_getheadcorr run_getnav run_listblocks run_loaddata run_lstconfig run_lsttemp run_matfiles run_plotter run_putnav run_rawsetup run_refabs run_refplots run_refsm run_refsm_npy run_rotate run_scandata run_setflags run_smoothr run_updategbin run_xducerxy scanping scanraw setflags smoothr startmatlab timegrid timslip ubprint update_gbin user_defined_headfunc xducerxy zapsetup 2009-07-21 17:00:11,806 DEBUG quick_adcp progdir = /home/currents/programs 2009-07-21 17:00:11,807 DEBUG quick_adcp binos = lnx 2009-07-21 17:00:11,807 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2009-07-21 17:00:11,807 DEBUG quick_setup yearbase is 2009, proc_yearbase is 2009 2009-07-21 17:00:11,807 DEBUG quick_setup numpy calculations to run: refsm 2009-07-21 17:00:11,808 DEBUG quick_setup mplplots to run: temp, nav, refl, hcorr, wtcal, btcal 2009-07-21 17:00:11,808 DEBUG quick_setup processing data logged with uhdas: 2009-07-21 17:00:11,808 DEBUG quick_setup datatype is uhdas 2009-07-21 17:00:11,808 DEBUG quick_setup pingtype is bb 2009-07-21 17:00:11,808 DEBUG quick_setup instclass is wh 2009-07-21 17:00:11,808 DEBUG quick_setup no post-processing heading correction will be used 2009-07-21 17:00:11,809 DEBUG quick_setup transducer depth set in *_cfg.m file 2009-07-21 17:00:11,827 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = wh; instname = 'wh300'; pingtype = 'bb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'km0917',... 'cfgpath' , '/home/data/km0917/proc/wh300/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2009-07-21 17:00:11,827 DEBUG quick_setup ------- starting Matlab engine ------- 2009-07-21 17:00:11,827 DEBUG quick_setup ['/home/currents/programs/matlab'] 2009-07-21 17:00:11,831 DEBUG call_matlab starting to wait for initial prompt 2009-07-21 17:00:12,753 DEBUG call_matlab received initial prompt 2009-07-21 17:00:12,973 DEBUG quick_adcp cwd is /home/data/km0917/proc/wh300 about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-07-21 17:00:12,974 DEBUG quick_adcp original fix file is a_km.gps 2009-07-21 17:00:12,974 DEBUG quick_adcp smoothed nav file is a_km_refsm.asc 2009-07-21 17:00:12,974 DEBUG quick_asect extracting matlab files for wh300, bb pings 2009-07-21 17:00:12,985 DEBUG quick_subs found 25 files using wildcard expansion from "/home/data/km0917/raw/wh300/*.raw" 2009-07-21 17:00:12,986 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/km0917/raw/wh300/km2009_199_64784.raw /home/data/km0917/raw/wh300/km2009_199_64800.raw /home/data/km0917/raw/wh300/km2009_199_72000.raw /home/data/km0917/raw/wh300/km2009_199_79200.raw /home/data/km0917/raw/wh300/km2009_200_00000.raw /home/data/km0917/raw/wh300/km2009_200_07200.raw /home/data/km0917/raw/wh300/km2009_200_14400.raw /home/data/km0917/raw/wh300/km2009_200_21600.raw /home/data/km0917/raw/wh300/km2009_200_28800.raw /home/data/km0917/raw/wh300/km2009_200_36000.raw /home/data/km0917/raw/wh300/km2009_200_43200.raw /home/data/km0917/raw/wh300/km2009_200_50400.raw /home/data/km0917/raw/wh300/km2009_200_57600.raw /home/data/km0917/raw/wh300/km2009_200_64800.raw /home/data/km0917/raw/wh300/km2009_200_72000.raw /home/data/km0917/raw/wh300/km2009_200_79200.raw /home/data/km0917/raw/wh300/km2009_201_00000.raw /home/data/km0917/raw/wh300/km2009_201_07200.raw /home/data/km0917/raw/wh300/km2009_201_14400.raw /home/data/km0917/raw/wh300/km2009_201_21600.raw /home/data/km0917/raw/wh300/km2009_201_28800.raw /home/data/km0917/raw/wh300/km2009_201_36000.raw /home/data/km0917/raw/wh300/km2009_201_43200.raw /home/data/km0917/raw/wh300/km2009_201_50400.raw /home/data/km0917/raw/wh300/km2009_201_57600.raw 2009-07-21 17:00:12,986 DEBUG quick_adcp LASTFILES invoked. using only 25 files from end of filelist 2009-07-21 17:00:12,986 DEBUG quick_adcp using delblks = 1 2009-07-21 17:00:12,987 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/km0917/raw/wh300/km2009_199_64784.raw /home/data/km0917/raw/wh300/km2009_199_64800.raw /home/data/km0917/raw/wh300/km2009_199_72000.raw /home/data/km0917/raw/wh300/km2009_199_79200.raw /home/data/km0917/raw/wh300/km2009_200_00000.raw /home/data/km0917/raw/wh300/km2009_200_07200.raw /home/data/km0917/raw/wh300/km2009_200_14400.raw /home/data/km0917/raw/wh300/km2009_200_21600.raw /home/data/km0917/raw/wh300/km2009_200_28800.raw /home/data/km0917/raw/wh300/km2009_200_36000.raw /home/data/km0917/raw/wh300/km2009_200_43200.raw /home/data/km0917/raw/wh300/km2009_200_50400.raw /home/data/km0917/raw/wh300/km2009_200_57600.raw /home/data/km0917/raw/wh300/km2009_200_64800.raw /home/data/km0917/raw/wh300/km2009_200_72000.raw /home/data/km0917/raw/wh300/km2009_200_79200.raw /home/data/km0917/raw/wh300/km2009_201_00000.raw /home/data/km0917/raw/wh300/km2009_201_07200.raw /home/data/km0917/raw/wh300/km2009_201_14400.raw /home/data/km0917/raw/wh300/km2009_201_21600.raw /home/data/km0917/raw/wh300/km2009_201_28800.raw /home/data/km0917/raw/wh300/km2009_201_36000.raw /home/data/km0917/raw/wh300/km2009_201_43200.raw /home/data/km0917/raw/wh300/km2009_201_50400.raw /home/data/km0917/raw/wh300/km2009_201_57600.raw 2009-07-21 17:00:12,988 DEBUG quick_adcp Tue Jul 21 17:00:12 2009 running quick_adcp.py as follows: --cntfile /home/data/km0917/proc/wh300/wh300_qpy.cnt ----- adcpsect variables ------ afilebase a_km cbasename contour dbname a_km dbpath ../adcpdb deeper_boundaries [40, 60, 80, 100, 120] firstdepth 15 gridnum 80 increment 2 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2009 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.018 adjust_time 1 afilebase a_km allow_reload True auto True beamangle 20 bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase km0917 cfgpath /home/data/km0917/proc/wh300/config cntfile /home/data/km0917/proc/wh300/wh300_qpy.cnt commands None cruisename km0917 data_def vmadcp.def datadir /home/data/km0917/raw/wh300 datafile_glob *.raw datatype uhdas dbname a_km dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 120 ensgyrorbin False expert None filelist ['/home/data/km0917/raw/wh300/km2009_199_64784.raw', '/home/data/km0917/raw/wh300/km2009_199_64800.raw', '/home/data/km0917/raw/wh300/km2009_199_72000.raw', '/home/data/km0917/raw/wh300/km2009_199_79200.raw', '/home/data/km0917/raw/wh300/km2009_200_00000.raw', '/home/data/km0917/raw/wh300/km2009_200_07200.raw', '/home/data/km0917/raw/wh300/km2009_200_14400.raw', '/home/data/km0917/raw/wh300/km2009_200_21600.raw', '/home/data/km0917/raw/wh300/km2009_200_28800.raw', '/home/data/km0917/raw/wh300/km2009_200_36000.raw', '/home/data/km0917/raw/wh300/km2009_200_43200.raw', '/home/data/km0917/raw/wh300/km2009_200_50400.raw', '/home/data/km0917/raw/wh300/km2009_200_57600.raw', '/home/data/km0917/raw/wh300/km2009_200_64800.raw', '/home/data/km0917/raw/wh300/km2009_200_72000.raw', '/home/data/km0917/raw/wh300/km2009_200_79200.raw', '/home/data/km0917/raw/wh300/km2009_201_00000.raw', '/home/data/km0917/raw/wh300/km2009_201_07200.raw', '/home/data/km0917/raw/wh300/km2009_201_14400.raw', '/home/data/km0917/raw/wh300/km2009_201_21600.raw', '/home/data/km0917/raw/wh300/km2009_201_28800.raw', '/home/data/km0917/raw/wh300/km2009_201_36000.raw', '/home/data/km0917/raw/wh300/km2009_201_43200.raw', '/home/data/km0917/raw/wh300/km2009_201_50400.raw', '/home/data/km0917/raw/wh300/km2009_201_57600.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 15 fixfile a_km.gps hcorr_inst posmv head_func None help False hidedisplay True howto_lta False howto_ping False incremental False instclass wh instname wh300 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = wh; instname = 'wh300'; pingtype = 'bb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'km0917',... 'cfgpath' , '/home/data/km0917/proc/wh300/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 mplplots ['temp', 'nav', 'refl', 'hcorr', 'wtcal', 'btcal'] nosave_editcfg 0 npycalc ['refsm'] num_persistence 24 numbins 128 orig_fixfile a_km.gps overview False pgmin 50 ping_headcorr True pingtype bb post_headcorr False printformats png proc_yearbase 2009 procdir wh300 progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/km0917/raw/wh300/km2009_199_64784.raw', '/home/data/km0917/raw/wh300/km2009_199_64800.raw', '/home/data/km0917/raw/wh300/km2009_199_72000.raw', '/home/data/km0917/raw/wh300/km2009_199_79200.raw', '/home/data/km0917/raw/wh300/km2009_200_00000.raw', '/home/data/km0917/raw/wh300/km2009_200_07200.raw', '/home/data/km0917/raw/wh300/km2009_200_14400.raw', '/home/data/km0917/raw/wh300/km2009_200_21600.raw', '/home/data/km0917/raw/wh300/km2009_200_28800.raw', '/home/data/km0917/raw/wh300/km2009_200_36000.raw', '/home/data/km0917/raw/wh300/km2009_200_43200.raw', '/home/data/km0917/raw/wh300/km2009_200_50400.raw', '/home/data/km0917/raw/wh300/km2009_200_57600.raw', '/home/data/km0917/raw/wh300/km2009_200_64800.raw', '/home/data/km0917/raw/wh300/km2009_200_72000.raw', '/home/data/km0917/raw/wh300/km2009_200_79200.raw', '/home/data/km0917/raw/wh300/km2009_201_00000.raw', '/home/data/km0917/raw/wh300/km2009_201_07200.raw', '/home/data/km0917/raw/wh300/km2009_201_14400.raw', '/home/data/km0917/raw/wh300/km2009_201_21600.raw', '/home/data/km0917/raw/wh300/km2009_201_28800.raw', '/home/data/km0917/raw/wh300/km2009_201_36000.raw', '/home/data/km0917/raw/wh300/km2009_201_43200.raw', '/home/data/km0917/raw/wh300/km2009_201_50400.raw', '/home/data/km0917/raw/wh300/km2009_201_57600.raw'] setup_info False skip_avg True smfile a_km_refsm.asc steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2009 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-07-21 17:00:12,988 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2009-07-21 17:00:12,988 DEBUG quick_run scanning files for time ranges... 2009-07-21 17:00:12,989 DEBUG quick_setup starting in /home/data/km0917/proc/wh300/scan 2009-07-21 17:00:12,989 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/scan 2009-07-21 17:00:12,989 DEBUG quick_setup running python command "scanraw" 2009-07-21 17:00:12,989 DEBUG call_matlab --> clear all 2009-07-21 17:00:12,994 DEBUG call_matlab <-- >> 2009-07-21 17:00:12,994 DEBUG call_matlab --> close all 2009-07-21 17:00:13,054 DEBUG call_matlab <-- >> 2009-07-21 17:00:13,054 DEBUG call_matlab --> cd /home/data/km0917/proc/wh300/scan 2009-07-21 17:00:13,057 DEBUG call_matlab <-- >> 2009-07-21 17:00:13,057 DEBUG call_matlab --> scan_tmp 2009-07-21 17:00:14,116 DEBUG call_matlab <-- getting config files from "/home/data/km0917/proc/wh300/config" running "km0917_cfg.m" running "km0917_proc.m" writing scan info to a_km.scn >> 2009-07-21 17:00:14,117 DEBUG quick_run writing time range from a_km.scn to a_km.tr 2009-07-21 17:00:14,117 DEBUG quick_run getting scan time range 2009-07-21 17:00:14,117 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:14,117 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/scan 2009-07-21 17:00:14,117 DEBUG quick_setup running python command "get_time_range" 2009-07-21 17:00:14,117 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-21 17:00:14,119 DEBUG quick_subs extracting time range 2009-07-21 17:00:14,120 DEBUG quick_subs start_end_time 2009/07/19 17:59:45 to 2009/07/21 16:59:32 2009-07-21 17:00:14,120 DEBUG quick_subs dd0: 199.749826 dd1: 201.708009 2009-07-21 17:00:14,120 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/km0917/proc/wh300 2009-07-21 17:00:14,121 DEBUG quick_adcp looking for database with adcpdb/a_km*.blk 2009-07-21 17:00:14,122 DEBUG quick_adcp database found: listing blocks 2009-07-21 17:00:14,122 DEBUG quick_subs removing a_kmdir.blk 2009-07-21 17:00:14,122 DEBUG quick_subs about to run mkblkdir 2009-07-21 17:00:14,123 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-07-21 17:00:14,123 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-07-21 17:00:14,134 DEBUG quick_subs database passes. 2009-07-21 17:00:14,134 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-07-21 17:00:14,134 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:14,135 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/adcpdb 2009-07-21 17:00:14,135 DEBUG quick_setup running python command "get_time_range" 2009-07-21 17:00:14,135 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-21 17:00:14,136 DEBUG quick_subs extracting time range 2009-07-21 17:00:14,136 DEBUG quick_subs start_end_time 2009/07/19 18:01:47 to 2009/07/21 16:29:12 2009-07-21 17:00:14,136 DEBUG quick_subs dd0: 199.751238 dd1: 201.686944 2009-07-21 17:00:14,136 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-07-21 17:00:14,137 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:14,137 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/adcpdb 2009-07-21 17:00:14,137 DEBUG quick_setup running python command "get_time_range" 2009-07-21 17:00:14,137 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-21 17:00:14,138 DEBUG quick_subs extracting time range 2009-07-21 17:00:14,138 DEBUG quick_subs start_end_time 2009/07/19 18:01:47 to 2009/07/21 16:29:12 2009-07-21 17:00:14,138 DEBUG quick_subs dd0: 199.751238 dd1: 201.686944 2009-07-21 17:00:14,138 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2009-07-21 17:00:14,139 DEBUG quick_adcp origdb_time_range is 2009/07/19 18:01:47 to 2009/07/21 16:29:12 2009-07-21 17:00:14,139 DEBUG quick_adcp (199.751238 to 201.686944) 2009-07-21 17:00:14,139 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2009-07-21 17:00:14,140 DEBUG quick_subs getting current (remaining after deletion) database times 2009-07-21 17:00:14,140 DEBUG quick_subs ['adcpdb/a_km003.blk', 'adcpdb/a_km009.blk', 'adcpdb/a_kmdir.blk', 'adcpdb/a_km002.blk', 'adcpdb/a_km008.blk', 'adcpdb/a_km001.blk', 'adcpdb/a_km010.blk', 'adcpdb/a_km007.blk', 'adcpdb/a_km004.blk', 'adcpdb/a_km005.blk', 'adcpdb/a_km006.blk'] 2009-07-21 17:00:14,140 DEBUG quick_subs length is 11 2009-07-21 17:00:14,140 DEBUG quick_subs removing a_kmdir.blk 2009-07-21 17:00:14,141 DEBUG quick_subs about to run mkblkdir 2009-07-21 17:00:14,141 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-07-21 17:00:14,141 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-07-21 17:00:14,151 DEBUG quick_subs database passes. 2009-07-21 17:00:14,152 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-07-21 17:00:14,152 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:14,152 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/adcpdb 2009-07-21 17:00:14,153 DEBUG quick_setup running python command "get_time_range" 2009-07-21 17:00:14,153 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-21 17:00:14,153 DEBUG quick_subs extracting time range 2009-07-21 17:00:14,154 DEBUG quick_subs start_end_time 2009/07/19 18:01:47 to 2009/07/21 16:29:12 2009-07-21 17:00:14,154 DEBUG quick_subs dd0: 199.751238 dd1: 201.686944 2009-07-21 17:00:14,154 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-21 17:00:14,154 DEBUG quick_subs reading time range 2009-07-21 17:00:14,155 DEBUG quick_subs start_end_time 2009/07/19 18:01:47 to 2009/07/21 16:29:12 2009-07-21 17:00:14,155 DEBUG quick_subs dd0: 199.751238 dd1: 201.686944 2009-07-21 17:00:14,155 INFO quick_subs Tue Jul 21 17:00:14 2009 2009-07-21 17:00:14,155 INFO quick_subs checking database time range by listblk 2009-07-21 17:00:14,156 DEBUG quick_subs removing a_kmdir.blk 2009-07-21 17:00:14,156 DEBUG quick_subs about to run mkblkdir 2009-07-21 17:00:14,156 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-07-21 17:00:14,156 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-07-21 17:00:14,169 DEBUG quick_subs database passes. 2009-07-21 17:00:14,170 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-07-21 17:00:14,170 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:14,170 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/adcpdb 2009-07-21 17:00:14,170 DEBUG quick_setup running python command "get_time_range" 2009-07-21 17:00:14,170 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-21 17:00:14,171 DEBUG quick_subs extracting time range 2009-07-21 17:00:14,171 DEBUG quick_subs start_end_time 2009/07/19 18:01:47 to 2009/07/21 16:29:12 2009-07-21 17:00:14,171 DEBUG quick_subs dd0: 199.751238 dd1: 201.686944 2009-07-21 17:00:14,173 INFO quick_subs found line /* 0 n= 146 a_km001.blk */ 2009/07/19 18:01:47 to 2009/07/19 22:52:08 2009-07-21 17:00:14,174 INFO quick_subs found line /* 1 n= 146 a_km002.blk */ 2009/07/19 22:54:08 to 2009/07/20 03:44:29 2009-07-21 17:00:14,174 INFO quick_subs found line /* 2 n= 146 a_km003.blk */ 2009/07/20 03:46:29 to 2009/07/20 08:36:51 2009-07-21 17:00:14,174 INFO quick_subs found line /* 3 n= 146 a_km004.blk */ 2009/07/20 08:38:51 to 2009/07/20 13:29:12 2009-07-21 17:00:14,174 INFO quick_subs found line /* 4 n= 146 a_km005.blk */ 2009/07/20 13:31:12 to 2009/07/20 18:21:33 2009-07-21 17:00:14,174 INFO quick_subs found line /* 5 n= 146 a_km006.blk */ 2009/07/20 18:23:34 to 2009/07/20 23:13:55 2009-07-21 17:00:14,175 INFO quick_subs found line /* 6 n= 146 a_km007.blk */ 2009/07/20 23:15:55 to 2009/07/21 04:08:17 2009-07-21 17:00:14,175 INFO quick_subs found line /* 7 n= 146 a_km008.blk */ 2009/07/21 04:10:17 to 2009/07/21 09:00:39 2009-07-21 17:00:14,175 INFO quick_subs found line /* 8 n= 146 a_km009.blk */ 2009/07/21 09:02:39 to 2009/07/21 13:53:00 2009-07-21 17:00:14,175 INFO quick_subs found line /* 9 n= 78 a_km010.blk */ 2009/07/21 13:55:00 to 2009/07/21 16:29:12 2009-07-21 17:00:14,176 INFO quick_subs scan data start at 199.7498264 2009-07-21 17:00:14,176 INFO quick_subs scan time range: 2009/07/19 17:59:45 to 2009/07/21 16:59:32 2009-07-21 17:00:14,176 INFO quick_subs codasdb ends at 201.6869444 (2009/07/21 16:29:12) 2009-07-21 17:00:14,176 DEBUG quick_subs ... changed dirs, in /home/data/km0917/proc/wh300/adcpdb 2009-07-21 17:00:14,177 DEBUG quick_subs deleting these files: ['a_km010.blk'] 2009-07-21 17:00:14,177 DEBUG quick_subs getting current (remaining after deletion) database times 2009-07-21 17:00:14,177 DEBUG quick_subs ['adcpdb/a_km003.blk', 'adcpdb/a_km009.blk', 'adcpdb/a_km002.blk', 'adcpdb/a_km008.blk', 'adcpdb/a_km001.blk', 'adcpdb/a_km007.blk', 'adcpdb/a_km004.blk', 'adcpdb/a_km005.blk', 'adcpdb/a_km006.blk'] 2009-07-21 17:00:14,178 DEBUG quick_subs length is 9 2009-07-21 17:00:14,178 DEBUG quick_subs about to run mkblkdir 2009-07-21 17:00:14,178 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-07-21 17:00:14,178 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-07-21 17:00:14,189 DEBUG quick_subs database passes. 2009-07-21 17:00:14,189 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-07-21 17:00:14,189 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:14,190 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/adcpdb 2009-07-21 17:00:14,190 DEBUG quick_setup running python command "get_time_range" 2009-07-21 17:00:14,190 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-21 17:00:14,191 DEBUG quick_subs extracting time range 2009-07-21 17:00:14,191 DEBUG quick_subs start_end_time 2009/07/19 18:01:47 to 2009/07/21 13:53:00 2009-07-21 17:00:14,191 DEBUG quick_subs dd0: 199.751238 dd1: 201.578472 2009-07-21 17:00:14,191 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-21 17:00:14,192 DEBUG quick_subs reading time range 2009-07-21 17:00:14,192 DEBUG quick_subs start_end_time 2009/07/19 18:01:47 to 2009/07/21 13:53:00 2009-07-21 17:00:14,192 DEBUG quick_subs dd0: 199.751238 dd1: 201.578472 2009-07-21 17:00:14,192 DEBUG quick_subs codas database currently goes from 2009/07/19 18:01:47 to 2009/07/21 13:53:00 2009-07-21 17:00:14,192 DEBUG quick_subs (199.751238 to 201.578472) 2009-07-21 17:00:14,193 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009 2009-07-21 17:00:14,194 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 2009-07-21 17:00:14,194 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009'] 2009-07-21 17:00:14,194 DEBUG quick_subs checked: unloaded blkstrs: ['010'] 2009-07-21 17:00:14,195 DEBUG quick_subs first unloaded file is load/ens_blk010.cmd 2009-07-21 17:00:14,196 DEBUG quick_subs data goes from 2009/07/21 13:55:00 to 2009/07/21 16:59:32 2009-07-21 17:00:14,196 DEBUG quick_subs (201.579861 to 201.708009) 2009-07-21 17:00:14,196 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/km0917/raw/wh300/km2009_199_64784.raw /home/data/km0917/raw/wh300/km2009_199_64800.raw /home/data/km0917/raw/wh300/km2009_199_72000.raw /home/data/km0917/raw/wh300/km2009_199_79200.raw /home/data/km0917/raw/wh300/km2009_200_00000.raw /home/data/km0917/raw/wh300/km2009_200_07200.raw /home/data/km0917/raw/wh300/km2009_200_14400.raw /home/data/km0917/raw/wh300/km2009_200_21600.raw /home/data/km0917/raw/wh300/km2009_200_28800.raw /home/data/km0917/raw/wh300/km2009_200_36000.raw /home/data/km0917/raw/wh300/km2009_200_43200.raw /home/data/km0917/raw/wh300/km2009_200_50400.raw /home/data/km0917/raw/wh300/km2009_200_57600.raw /home/data/km0917/raw/wh300/km2009_200_64800.raw /home/data/km0917/raw/wh300/km2009_200_72000.raw /home/data/km0917/raw/wh300/km2009_200_79200.raw /home/data/km0917/raw/wh300/km2009_201_00000.raw /home/data/km0917/raw/wh300/km2009_201_07200.raw /home/data/km0917/raw/wh300/km2009_201_14400.raw /home/data/km0917/raw/wh300/km2009_201_21600.raw /home/data/km0917/raw/wh300/km2009_201_28800.raw /home/data/km0917/raw/wh300/km2009_201_36000.raw /home/data/km0917/raw/wh300/km2009_201_43200.raw /home/data/km0917/raw/wh300/km2009_201_50400.raw /home/data/km0917/raw/wh300/km2009_201_57600.raw 2009-07-21 17:00:14,196 INFO quick_run Tue Jul 21 17:00:14 2009 2009-07-21 17:00:14,196 INFO quick_run about to load uhdas files 2009-07-21 17:00:14,196 INFO quick_run /home/data/km0917/raw/wh300/km2009_199_64784.raw /home/data/km0917/raw/wh300/km2009_199_64800.raw /home/data/km0917/raw/wh300/km2009_199_72000.raw /home/data/km0917/raw/wh300/km2009_199_79200.raw /home/data/km0917/raw/wh300/km2009_200_00000.raw /home/data/km0917/raw/wh300/km2009_200_07200.raw /home/data/km0917/raw/wh300/km2009_200_14400.raw /home/data/km0917/raw/wh300/km2009_200_21600.raw /home/data/km0917/raw/wh300/km2009_200_28800.raw /home/data/km0917/raw/wh300/km2009_200_36000.raw /home/data/km0917/raw/wh300/km2009_200_43200.raw /home/data/km0917/raw/wh300/km2009_200_50400.raw /home/data/km0917/raw/wh300/km2009_200_57600.raw /home/data/km0917/raw/wh300/km2009_200_64800.raw /home/data/km0917/raw/wh300/km2009_200_72000.raw /home/data/km0917/raw/wh300/km2009_200_79200.raw /home/data/km0917/raw/wh300/km2009_201_00000.raw /home/data/km0917/raw/wh300/km2009_201_07200.raw /home/data/km0917/raw/wh300/km2009_201_14400.raw /home/data/km0917/raw/wh300/km2009_201_21600.raw /home/data/km0917/raw/wh300/km2009_201_28800.raw /home/data/km0917/raw/wh300/km2009_201_36000.raw /home/data/km0917/raw/wh300/km2009_201_43200.raw /home/data/km0917/raw/wh300/km2009_201_50400.raw /home/data/km0917/raw/wh300/km2009_201_57600.raw 2009-07-21 17:00:14,197 DEBUG quick_setup load/ldcodas.tmp exists 2009-07-21 17:00:14,197 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:14,197 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/load 2009-07-21 17:00:14,197 DEBUG quick_setup running python command "ldcodas" 2009-07-21 17:00:14,197 DEBUG quick_subs in /home/data/km0917/proc/wh300/load 2009-07-21 17:00:14,198 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009'] 2009-07-21 17:00:14,198 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010'] 2009-07-21 17:00:14,199 DEBUG quick_subs starttime is 2009/07/21 13:55:00 2009-07-21 17:00:14,199 DEBUG quick_subs RESETTING thisload_time_range 2009-07-21 17:00:14,200 DEBUG quick_subs time range of data to be loaded: 2009/07/21 13:55:00 to 2009/07/21 16:59:32 2009-07-21 17:00:14,200 DEBUG quick_subs data startdd 201.579861 data enddd 201.708009 2009-07-21 17:00:14,200 DEBUG quick_subs about to load from these cmd files ['ens_blk010.cmd'] 2009-07-21 17:00:14,200 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_km DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2009 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk010.cmd 2009-07-21 17:00:14,201 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2009-07-21 17:00:14,229 DEBUG quick_subs removing a_kmdir.blk 2009-07-21 17:00:14,230 DEBUG quick_subs about to run mkblkdir 2009-07-21 17:00:14,230 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-07-21 17:00:14,230 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-07-21 17:00:14,241 DEBUG quick_subs database passes. 2009-07-21 17:00:14,242 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-07-21 17:00:14,242 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:14,242 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/adcpdb 2009-07-21 17:00:14,242 DEBUG quick_setup running python command "get_time_range" 2009-07-21 17:00:14,242 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-21 17:00:14,243 DEBUG quick_subs extracting time range 2009-07-21 17:00:14,243 DEBUG quick_subs start_end_time 2009/07/19 18:01:47 to 2009/07/21 16:59:13 2009-07-21 17:00:14,243 DEBUG quick_subs dd0: 199.751238 dd1: 201.707789 2009-07-21 17:00:14,244 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-07-21 17:00:14,244 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:14,244 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/adcpdb 2009-07-21 17:00:14,244 DEBUG quick_setup running python command "get_time_range" 2009-07-21 17:00:14,244 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-07-21 17:00:14,245 DEBUG quick_subs extracting time range 2009-07-21 17:00:14,245 DEBUG quick_subs start_end_time 2009/07/19 18:01:47 to 2009/07/21 16:59:13 2009-07-21 17:00:14,245 DEBUG quick_subs dd0: 199.751238 dd1: 201.707789 2009-07-21 17:00:14,246 DEBUG quick_adcp loaded_time_range is 2009/07/19 18:01:47 to 2009/07/21 16:59:13 2009-07-21 17:00:14,246 DEBUG quick_adcp (199.751238 to 201.707789) 2009-07-21 17:00:14,246 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:14,246 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/adcpdb 2009-07-21 17:00:14,247 DEBUG quick_setup running python command "lst_conf" 2009-07-21 17:00:14,247 DEBUG quick_subs dbname: a_km output: a_km.cnh time_ranges: all 2009-07-21 17:00:14,247 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2009-07-21 17:00:14,260 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2009-07-21 17:00:14,260 DEBUG quick_run executing commands from /home/data/km0917/proc/wh300/edit 2009-07-21 17:00:14,260 DEBUG quick_run setup.m exists. not replacing 2009-07-21 17:00:14,261 DEBUG quick_run asetup.m exists. not replacing 2009-07-21 17:00:14,261 DEBUG quick_run aflagit_setup.m exists. not replacing 2009-07-21 17:00:14,261 DEBUG quick_run ------------ step 4: run setflags ------------- 2009-07-21 17:00:14,261 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:14,261 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/edit 2009-07-21 17:00:14,262 DEBUG quick_setup running python command "setflags" 2009-07-21 17:00:14,262 DEBUG quick_subs dbname: ../adcpdb/a_km pg_min: 50 set_range_bit time_ranges: all 2009-07-21 17:00:14,262 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-07-21 17:00:14,288 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2009-07-21 17:00:14,288 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:14,289 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/nav 2009-07-21 17:00:14,289 DEBUG quick_setup running python command "catnav" 2009-07-21 17:00:14,291 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2009-07-21 17:00:14,291 DEBUG quick_run hcorr_inst is posmv 2009-07-21 17:00:14,292 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2009-07-21 17:00:14,292 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:14,292 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/cal/rotate 2009-07-21 17:00:14,292 DEBUG quick_setup running python command "lst_hdg" 2009-07-21 17:00:14,292 DEBUG quick_subs dbname: ../../adcpdb/a_km output: scn.hdg step_size= 1 year_base= 2009 time_ranges: all 2009-07-21 17:00:14,293 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2009-07-21 17:00:14,311 DEBUG quick_mpl Starting plot: hcorr 2009-07-21 17:00:14,352 DEBUG quick_mplplots found 1.956560 days of data 2009-07-21 17:00:14,352 DEBUG quick_mplplots figures with 4 panels per page, 1.000000 days per panel 2009-07-21 17:00:14,352 DEBUG quick_mplplots printing 1 pages 2009-07-21 17:00:15,119 DEBUG quick_mpl Ending plot: hcorr 2009-07-21 17:00:15,119 DEBUG quick_run ------------ step 7: rotate ------------- 2009-07-21 17:00:15,119 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:15,120 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/cal/rotate 2009-07-21 17:00:15,120 DEBUG quick_setup running python command "rotated" 2009-07-21 17:00:15,127 DEBUG quick_subs last rotated time from log file: 2009/07/21 16:29:34 2009-07-21 17:00:15,127 DEBUG quick_subs time range of currently loaded data: 2009/07/19 18:01:47 to 2009/07/21 16:59:13 2009-07-21 17:00:15,128 DEBUG quick_subs (199.751238 to 201.707789) 2009-07-21 17:00:15,128 DEBUG quick_setup cal/rotate/rotate.tmp exists 2009-07-21 17:00:15,128 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:15,128 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/cal/rotate 2009-07-21 17:00:15,129 DEBUG quick_setup running python command "rotate" 2009-07-21 17:00:15,129 DEBUG quick_subs DB_NAME: ../../adcpdb/a_km LOG_FILE: rotate.log TIME_RANGE: 2009/07/21 13:55:00 to 2009/07/21 16:59:32 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2009 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2009-07-21 17:00:15,129 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2009-07-21 17:00:15,137 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-07-21 17:00:15,137 DEBUG quick_setup nav/as_nav.tmp exists 2009-07-21 17:00:15,137 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:15,138 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/nav 2009-07-21 17:00:15,138 DEBUG quick_setup running python command "as_nav" 2009-07-21 17:00:15,138 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/07/19 18:01:47 to 2009/07/21 16:59:13 /* the whole time range */ 2009-07-21 17:00:15,138 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-07-21 17:00:15,182 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-07-21 17:00:15,182 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:15,183 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/nav 2009-07-21 17:00:15,183 DEBUG quick_setup running python command "refabs" 2009-07-21 17:00:15,183 DEBUG quick_subs fix_file_type: simple reference_file: a_km.nav fix_file: a_km.gps output: a_km.ref year_base= 2009 ensemble_length= 120 gap_tolerance= 10 2009-07-21 17:00:15,183 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-07-21 17:00:15,214 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-07-21 17:00:15,214 DEBUG quick_setup nav/smoothr.tmp exists 2009-07-21 17:00:15,215 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:15,215 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/nav 2009-07-21 17:00:15,215 DEBUG quick_setup running python command "smoothr" 2009-07-21 17:00:15,215 DEBUG quick_subs reference_file: a_km.nav refabs_output: a_km.ref output: a_km.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 120 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-07-21 17:00:15,216 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-07-21 17:00:15,368 DEBUG quick_npy Starting: refsm 2009-07-21 17:00:15,443 INFO nav dtmin = -0.50 dtmax = 0.50 2009-07-21 17:00:15,655 DEBUG quick_npy Ending: refsm 2009-07-21 17:00:15,655 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-07-21 17:00:15,655 DEBUG quick_setup nav/putnav.tmp exists 2009-07-21 17:00:15,656 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:15,656 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/nav 2009-07-21 17:00:15,656 DEBUG quick_setup running python command "putnav" 2009-07-21 17:00:15,656 DEBUG quick_subs dbname: ../adcpdb/a_km position_file: a_km_refsm.asc year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-07-21 17:00:15,656 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-07-21 17:00:15,704 DEBUG quick_mpl Starting plot: nav 2009-07-21 17:00:16,378 DEBUG quick_mpl Ending plot: nav 2009-07-21 17:00:16,379 DEBUG quick_mpl Starting plot: refl 2009-07-21 17:00:16,466 DEBUG quick_mplplots found 1.953782 days of data 2009-07-21 17:00:16,466 DEBUG quick_mplplots start day is 199.000000 2009-07-21 17:00:16,467 DEBUG quick_mplplots figures with 2.000000 days per page 2009-07-21 17:00:16,467 DEBUG quick_mplplots printing 2 pages 2009-07-21 17:00:16,467 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2009-07-21 17:00:16,467 INFO quick_mplplots startdd is 199.0 2009-07-21 17:00:16,467 INFO quick_mplplots dt is 2.0 2009-07-21 17:00:17,958 DEBUG quick_mpl Ending plot: refl 2009-07-21 17:00:17,958 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2009-07-21 17:00:17,958 DEBUG quick_run find profile flags ------------ *** ------------- 2009-07-21 17:00:17,959 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:17,960 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/edit 2009-07-21 17:00:17,961 DEBUG quick_setup running python command "aedit" 2009-07-21 17:00:19,486 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2009-07-21 17:00:19,486 DEBUG quick_run starting in: /home/data/km0917/proc/wh300 2009-07-21 17:00:19,486 DEBUG quick_run executing commands from: edit 2009-07-21 17:00:19,489 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_km abadbin_tmp.asc 2009-07-21 17:00:19,497 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_km 20 2009-07-21 17:00:19,503 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-07-21 17:00:19,532 DEBUG quick_run changing directories back to /home/data/km0917/proc/wh300 2009-07-21 17:00:19,532 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2009-07-21 17:00:19,533 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-07-21 17:00:19,533 DEBUG quick_setup nav/as_nav.tmp exists 2009-07-21 17:00:19,533 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:19,533 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/nav 2009-07-21 17:00:19,534 DEBUG quick_setup running python command "as_nav" 2009-07-21 17:00:19,534 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/07/19 18:01:47 to 2009/07/21 16:59:13 /* the whole time range */ 2009-07-21 17:00:19,534 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-07-21 17:00:19,578 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-07-21 17:00:19,578 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:19,578 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/nav 2009-07-21 17:00:19,579 DEBUG quick_setup running python command "refabs" 2009-07-21 17:00:19,579 DEBUG quick_subs fix_file_type: simple reference_file: a_km.nav fix_file: a_km.gps output: a_km.ref year_base= 2009 ensemble_length= 120 gap_tolerance= 10 2009-07-21 17:00:19,579 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-07-21 17:00:19,611 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-07-21 17:00:19,612 DEBUG quick_setup nav/smoothr.tmp exists 2009-07-21 17:00:19,612 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:19,612 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/nav 2009-07-21 17:00:19,612 DEBUG quick_setup running python command "smoothr" 2009-07-21 17:00:19,613 DEBUG quick_subs reference_file: a_km.nav refabs_output: a_km.ref output: a_km.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 120 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-07-21 17:00:19,613 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-07-21 17:00:19,762 DEBUG quick_npy Starting: refsm 2009-07-21 17:00:19,835 INFO nav dtmin = -0.50 dtmax = 0.50 2009-07-21 17:00:19,973 DEBUG quick_npy Ending: refsm 2009-07-21 17:00:19,974 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-07-21 17:00:19,974 DEBUG quick_setup nav/putnav.tmp exists 2009-07-21 17:00:19,974 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:19,974 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/nav 2009-07-21 17:00:19,975 DEBUG quick_setup running python command "putnav" 2009-07-21 17:00:19,975 DEBUG quick_subs dbname: ../adcpdb/a_km position_file: a_km_refsm.asc year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-07-21 17:00:19,975 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-07-21 17:00:20,022 DEBUG quick_mpl Starting plot: nav 2009-07-21 17:00:20,677 DEBUG quick_mpl Ending plot: nav 2009-07-21 17:00:20,677 DEBUG quick_mpl Starting plot: refl 2009-07-21 17:00:20,766 DEBUG quick_mplplots found 1.953782 days of data 2009-07-21 17:00:20,766 DEBUG quick_mplplots start day is 199.000000 2009-07-21 17:00:20,766 DEBUG quick_mplplots figures with 2.000000 days per page 2009-07-21 17:00:20,766 DEBUG quick_mplplots printing 2 pages 2009-07-21 17:00:20,766 DEBUG quick_mplplots yrange will be [1.000000, 1.000000] 2009-07-21 17:00:20,767 INFO quick_mplplots startdd is 199.0 2009-07-21 17:00:20,767 INFO quick_mplplots dt is 2.0 2009-07-21 17:00:22,265 DEBUG quick_mpl Ending plot: refl 2009-07-21 17:00:22,265 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2009-07-21 17:00:22,266 DEBUG quick_setup edit/lst_temp.tmp exists 2009-07-21 17:00:22,266 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:22,266 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/edit 2009-07-21 17:00:22,266 DEBUG quick_setup running python command "lst_temp" 2009-07-21 17:00:22,266 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km.tem step_size= 1 year_base= 2009 time_ranges: all 2009-07-21 17:00:22,267 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2009-07-21 17:00:22,289 DEBUG quick_mpl Starting plot: temp 2009-07-21 17:00:22,322 DEBUG quick_mplplots plotting 1407 points 2009-07-21 17:00:22,810 DEBUG quick_mpl Ending plot: temp 2009-07-21 17:00:22,810 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2009-07-21 17:00:22,811 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2009-07-21 17:00:22,811 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:22,811 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/cal/botmtrk 2009-07-21 17:00:22,811 DEBUG quick_setup running python command "lst_btrk" 2009-07-21 17:00:22,812 DEBUG quick_subs dbname: ../../adcpdb/a_km output: a_km.btm step_size= 1 year_base= 2009 time_ranges: 2009/07/19 18:01:47 to 2009/07/21 16:59:13 /* whole time range */ 2009-07-21 17:00:22,812 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2009-07-21 17:00:22,822 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2009-07-21 17:00:22,823 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:22,823 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/cal/botmtrk 2009-07-21 17:00:22,823 DEBUG quick_setup running python command "refabsbt" 2009-07-21 17:00:22,823 DEBUG quick_subs fix_file_type: simple reference_file: a_km.btm fix_file: ../../nav/a_km.gps output: a_km.ref year_base= 2009 ensemble_length= 120 gap_tolerance= 60 2009-07-21 17:00:22,824 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2009-07-21 17:00:22,830 DEBUG quick_mpl Starting plot: btcal 2009-07-21 17:00:22,831 DEBUG quick_mplplots No data in a_km.btm 2009-07-21 17:00:22,831 DEBUG quick_mplplots Returning from Btplot with no output 2009-07-21 17:00:22,832 DEBUG quick_mpl Ending plot: btcal 2009-07-21 17:00:22,832 DEBUG quick_setup nav/as_nav.tmp exists 2009-07-21 17:00:22,832 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:22,832 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/nav 2009-07-21 17:00:22,832 DEBUG quick_setup running python command "as_nav" 2009-07-21 17:00:22,833 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/07/19 18:01:47 to 2009/07/21 16:59:13 /* the whole time range */ 2009-07-21 17:00:22,833 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-07-21 17:00:22,876 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2009-07-21 17:00:22,877 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:22,877 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/cal/watertrk 2009-07-21 17:00:22,877 DEBUG quick_setup running python command "timslip" 2009-07-21 17:00:22,877 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_km.gps reference_file: ../../nav/a_km.nav output_file: a_km_7.cal year_base= 2009 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2009-07-21 17:00:22,878 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2009-07-21 17:00:22,895 DEBUG quick_mpl Starting plot: wtcal 2009-07-21 17:00:22,898 DEBUG quick_mplplots Found 24 calibration points 2009-07-21 17:00:24,786 DEBUG quick_mpl Ending plot: wtcal 2009-07-21 17:00:24,786 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2009-07-21 17:00:24,787 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:24,787 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/vector 2009-07-21 17:00:24,787 DEBUG quick_setup running python command "timegrid" 2009-07-21 17:00:24,787 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_km.tmp 2009-07-21 17:00:24,794 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:24,794 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/vector 2009-07-21 17:00:24,794 DEBUG quick_setup running python command "as_vect" 2009-07-21 17:00:24,795 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2009-07-21 17:00:24,829 DEBUG quick_asect done making vector matfiles 2009-07-21 17:00:24,830 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:24,830 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/contour 2009-07-21 17:00:24,830 DEBUG quick_setup running python command "timegrid" 2009-07-21 17:00:24,831 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_km.tmp 2009-07-21 17:00:24,838 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:24,838 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/contour 2009-07-21 17:00:24,838 DEBUG quick_setup running python command "as_cont" 2009-07-21 17:00:24,839 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2009-07-21 17:00:24,898 DEBUG quick_setup starting in /home/data/km0917/proc/wh300 2009-07-21 17:00:24,899 DEBUG quick_setup executing commands from /home/data/km0917/proc/wh300/contour 2009-07-21 17:00:24,899 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_km 2009-07-21 17:00:25,016 DEBUG quick_asect done running getmat with "allbins" 2009-07-21 17:00:25,069 INFO root copying NOFIG to /home/adcp/www/figures/wh300_hcorr_plot.png 2009-07-21 17:00:25,069 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/wh300_hcorr_plot_thumb.png 2009-07-21 17:00:25,069 DEBUG root matfile is contour/contour_uv.mat 2009-07-21 17:00:25,071 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/wh300_cont_uv.mat 2009-07-21 17:00:25,071 DEBUG root matfile is vector/vector_uv.mat 2009-07-21 17:00:25,072 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/wh300_vect_uv.mat 2009-07-21 17:00:25,072 DEBUG root matfile is contour/contour_xy.mat 2009-07-21 17:00:25,072 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/wh300_cont_xy.mat 2009-07-21 17:00:25,073 DEBUG root matfile is vector/vector_xy.mat 2009-07-21 17:00:25,073 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/wh300_vect_xy.mat 2009-07-21 17:00:25,073 DEBUG root about to copy file edit/a_km.tem to /home/adcp/www/data/wh300_temp.asc 2009-07-21 17:00:25,074 INFO root copying edit/a_km.tem to /home/adcp/www/data/wh300_temp.asc 2009-07-21 17:00:25,074 INFO root Ending quick_adcp.py 2009-07-21 17:00:25,129 DEBUG quick_setup killed matlab engine