2009-06-30 17:33:19,990 DEBUG root about to write control file parameters to --yearbase 2009 --pingtype bb --cfgbase km0914 --cruisename km0914 --instclass os --instname os38 --dbname a_km --datatype uhdas --datadir /home/data/km0914/raw/os38 --cfgpath /home/data/km0914/proc/os38bb/config --ens_len 300 --ping_headcorr --hcorr_inst posmv --use_topo4edit ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --acc_heading_cutoff 0.018000 2009-06-30 17:33:19,993 DEBUG quick_adcp progdir = /home/currents/programs 2009-06-30 17:33:19,993 DEBUG quick_adcp binos = lnx 2009-06-30 17:33:19,993 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2009-06-30 17:33:19,994 DEBUG quick_setup yearbase is 2009, proc_yearbase is 2009 2009-06-30 17:33:19,994 DEBUG quick_setup processing data logged with uhdas: 2009-06-30 17:33:19,994 DEBUG quick_setup datatype is uhdas 2009-06-30 17:33:19,994 DEBUG quick_setup pingtype is bb 2009-06-30 17:33:19,994 DEBUG quick_setup instclass is os 2009-06-30 17:33:19,994 DEBUG quick_setup no post-processing heading correction will be used 2009-06-30 17:33:19,995 DEBUG quick_setup transducer depth set in *_cfg.m file 2009-06-30 17:33:19,995 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os38'; pingtype = 'bb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'km0914',... 'cfgpath' , '/home/data/km0914/proc/os38bb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2009-06-30 17:33:19,995 DEBUG quick_setup ------- starting Matlab engine ------- 2009-06-30 17:33:19,995 DEBUG quick_setup ['/home/currents/programs/matlab'] 2009-06-30 17:33:19,997 DEBUG call_matlab starting to wait for initial prompt 2009-06-30 17:33:20,913 DEBUG call_matlab received initial prompt 2009-06-30 17:33:21,130 DEBUG quick_adcp cwd is /home/data/km0914/proc/os38bb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-06-30 17:33:21,130 DEBUG quick_adcp original fix file is a_km.gps 2009-06-30 17:33:21,130 DEBUG quick_adcp smoothed nav file is refsm.sm 2009-06-30 17:33:21,131 DEBUG quick_asect extracting matlab files for os38, bb pings 2009-06-30 17:33:21,255 DEBUG quick_subs found 96 files using wildcard expansion from "/home/data/km0914/raw/os38/*.raw" 2009-06-30 17:33:21,256 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/km0914/raw/os38/km2009_172_66794.raw /home/data/km0914/raw/os38/km2009_172_72000.raw /home/data/km0914/raw/os38/km2009_172_79200.raw /home/data/km0914/raw/os38/km2009_173_00000.raw /home/data/km0914/raw/os38/km2009_173_07200.raw /home/data/km0914/raw/os38/km2009_173_14400.raw /home/data/km0914/raw/os38/km2009_173_21600.raw /home/data/km0914/raw/os38/km2009_173_28800.raw /home/data/km0914/raw/os38/km2009_173_36000.raw /home/data/km0914/raw/os38/km2009_173_43200.raw /home/data/km0914/raw/os38/km2009_173_50400.raw /home/data/km0914/raw/os38/km2009_173_57600.raw /home/data/km0914/raw/os38/km2009_173_64800.raw /home/data/km0914/raw/os38/km2009_173_72000.raw /home/data/km0914/raw/os38/km2009_173_79200.raw /home/data/km0914/raw/os38/km2009_174_00000.raw /home/data/km0914/raw/os38/km2009_174_07200.raw /home/data/km0914/raw/os38/km2009_174_14400.raw /home/data/km0914/raw/os38/km2009_174_21600.raw /home/data/km0914/raw/os38/km2009_174_28800.raw /home/data/km0914/raw/os38/km2009_174_36000.raw /home/data/km0914/raw/os38/km2009_174_43200.raw /home/data/km0914/raw/os38/km2009_174_50400.raw /home/data/km0914/raw/os38/km2009_174_57600.raw /home/data/km0914/raw/os38/km2009_174_64800.raw /home/data/km0914/raw/os38/km2009_174_72000.raw /home/data/km0914/raw/os38/km2009_174_79200.raw /home/data/km0914/raw/os38/km2009_175_00000.raw /home/data/km0914/raw/os38/km2009_175_07200.raw /home/data/km0914/raw/os38/km2009_175_14400.raw /home/data/km0914/raw/os38/km2009_175_21600.raw /home/data/km0914/raw/os38/km2009_175_28800.raw /home/data/km0914/raw/os38/km2009_175_36000.raw /home/data/km0914/raw/os38/km2009_175_43200.raw /home/data/km0914/raw/os38/km2009_175_50400.raw /home/data/km0914/raw/os38/km2009_175_57600.raw /home/data/km0914/raw/os38/km2009_175_64800.raw /home/data/km0914/raw/os38/km2009_175_72000.raw /home/data/km0914/raw/os38/km2009_175_79200.raw /home/data/km0914/raw/os38/km2009_176_00000.raw /home/data/km0914/raw/os38/km2009_176_07200.raw /home/data/km0914/raw/os38/km2009_176_14400.raw /home/data/km0914/raw/os38/km2009_176_21600.raw /home/data/km0914/raw/os38/km2009_176_28800.raw /home/data/km0914/raw/os38/km2009_176_36000.raw /home/data/km0914/raw/os38/km2009_176_43200.raw /home/data/km0914/raw/os38/km2009_176_50400.raw /home/data/km0914/raw/os38/km2009_176_57600.raw /home/data/km0914/raw/os38/km2009_176_64800.raw /home/data/km0914/raw/os38/km2009_176_72000.raw /home/data/km0914/raw/os38/km2009_176_79200.raw /home/data/km0914/raw/os38/km2009_177_00000.raw /home/data/km0914/raw/os38/km2009_177_07200.raw /home/data/km0914/raw/os38/km2009_177_14400.raw /home/data/km0914/raw/os38/km2009_177_21600.raw /home/data/km0914/raw/os38/km2009_177_28800.raw /home/data/km0914/raw/os38/km2009_177_36000.raw /home/data/km0914/raw/os38/km2009_177_43200.raw /home/data/km0914/raw/os38/km2009_177_50400.raw /home/data/km0914/raw/os38/km2009_177_57600.raw /home/data/km0914/raw/os38/km2009_177_64800.raw /home/data/km0914/raw/os38/km2009_177_72000.raw /home/data/km0914/raw/os38/km2009_177_79200.raw /home/data/km0914/raw/os38/km2009_178_00000.raw /home/data/km0914/raw/os38/km2009_178_07200.raw /home/data/km0914/raw/os38/km2009_178_14400.raw /home/data/km0914/raw/os38/km2009_178_21600.raw /home/data/km0914/raw/os38/km2009_178_28800.raw /home/data/km0914/raw/os38/km2009_178_36000.raw /home/data/km0914/raw/os38/km2009_178_43200.raw /home/data/km0914/raw/os38/km2009_178_50400.raw /home/data/km0914/raw/os38/km2009_178_57600.raw /home/data/km0914/raw/os38/km2009_178_64800.raw /home/data/km0914/raw/os38/km2009_178_72000.raw /home/data/km0914/raw/os38/km2009_178_79200.raw /home/data/km0914/raw/os38/km2009_179_00000.raw /home/data/km0914/raw/os38/km2009_179_07200.raw /home/data/km0914/raw/os38/km2009_179_14400.raw /home/data/km0914/raw/os38/km2009_179_21600.raw /home/data/km0914/raw/os38/km2009_179_28800.raw /home/data/km0914/raw/os38/km2009_179_36000.raw /home/data/km0914/raw/os38/km2009_179_43200.raw /home/data/km0914/raw/os38/km2009_179_50400.raw /home/data/km0914/raw/os38/km2009_179_57600.raw /home/data/km0914/raw/os38/km2009_179_64800.raw /home/data/km0914/raw/os38/km2009_179_72000.raw /home/data/km0914/raw/os38/km2009_179_79200.raw /home/data/km0914/raw/os38/km2009_180_00000.raw /home/data/km0914/raw/os38/km2009_180_07200.raw /home/data/km0914/raw/os38/km2009_180_14400.raw /home/data/km0914/raw/os38/km2009_180_21600.raw /home/data/km0914/raw/os38/km2009_180_28800.raw /home/data/km0914/raw/os38/km2009_180_36000.raw /home/data/km0914/raw/os38/km2009_180_43200.raw /home/data/km0914/raw/os38/km2009_180_50400.raw /home/data/km0914/raw/os38/km2009_180_57600.raw 2009-06-30 17:33:21,256 DEBUG quick_adcp LASTFILES invoked. using only 96 files from end of filelist 2009-06-30 17:33:21,256 DEBUG quick_adcp using delblks = 1 2009-06-30 17:33:21,257 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/km0914/raw/os38/km2009_172_66794.raw /home/data/km0914/raw/os38/km2009_172_72000.raw /home/data/km0914/raw/os38/km2009_172_79200.raw /home/data/km0914/raw/os38/km2009_173_00000.raw /home/data/km0914/raw/os38/km2009_173_07200.raw /home/data/km0914/raw/os38/km2009_173_14400.raw /home/data/km0914/raw/os38/km2009_173_21600.raw /home/data/km0914/raw/os38/km2009_173_28800.raw /home/data/km0914/raw/os38/km2009_173_36000.raw /home/data/km0914/raw/os38/km2009_173_43200.raw /home/data/km0914/raw/os38/km2009_173_50400.raw /home/data/km0914/raw/os38/km2009_173_57600.raw /home/data/km0914/raw/os38/km2009_173_64800.raw /home/data/km0914/raw/os38/km2009_173_72000.raw /home/data/km0914/raw/os38/km2009_173_79200.raw /home/data/km0914/raw/os38/km2009_174_00000.raw /home/data/km0914/raw/os38/km2009_174_07200.raw /home/data/km0914/raw/os38/km2009_174_14400.raw /home/data/km0914/raw/os38/km2009_174_21600.raw /home/data/km0914/raw/os38/km2009_174_28800.raw /home/data/km0914/raw/os38/km2009_174_36000.raw /home/data/km0914/raw/os38/km2009_174_43200.raw /home/data/km0914/raw/os38/km2009_174_50400.raw /home/data/km0914/raw/os38/km2009_174_57600.raw /home/data/km0914/raw/os38/km2009_174_64800.raw /home/data/km0914/raw/os38/km2009_174_72000.raw /home/data/km0914/raw/os38/km2009_174_79200.raw /home/data/km0914/raw/os38/km2009_175_00000.raw /home/data/km0914/raw/os38/km2009_175_07200.raw /home/data/km0914/raw/os38/km2009_175_14400.raw /home/data/km0914/raw/os38/km2009_175_21600.raw /home/data/km0914/raw/os38/km2009_175_28800.raw /home/data/km0914/raw/os38/km2009_175_36000.raw /home/data/km0914/raw/os38/km2009_175_43200.raw /home/data/km0914/raw/os38/km2009_175_50400.raw /home/data/km0914/raw/os38/km2009_175_57600.raw /home/data/km0914/raw/os38/km2009_175_64800.raw /home/data/km0914/raw/os38/km2009_175_72000.raw /home/data/km0914/raw/os38/km2009_175_79200.raw /home/data/km0914/raw/os38/km2009_176_00000.raw /home/data/km0914/raw/os38/km2009_176_07200.raw /home/data/km0914/raw/os38/km2009_176_14400.raw /home/data/km0914/raw/os38/km2009_176_21600.raw /home/data/km0914/raw/os38/km2009_176_28800.raw /home/data/km0914/raw/os38/km2009_176_36000.raw /home/data/km0914/raw/os38/km2009_176_43200.raw /home/data/km0914/raw/os38/km2009_176_50400.raw /home/data/km0914/raw/os38/km2009_176_57600.raw /home/data/km0914/raw/os38/km2009_176_64800.raw /home/data/km0914/raw/os38/km2009_176_72000.raw /home/data/km0914/raw/os38/km2009_176_79200.raw /home/data/km0914/raw/os38/km2009_177_00000.raw /home/data/km0914/raw/os38/km2009_177_07200.raw /home/data/km0914/raw/os38/km2009_177_14400.raw /home/data/km0914/raw/os38/km2009_177_21600.raw /home/data/km0914/raw/os38/km2009_177_28800.raw /home/data/km0914/raw/os38/km2009_177_36000.raw /home/data/km0914/raw/os38/km2009_177_43200.raw /home/data/km0914/raw/os38/km2009_177_50400.raw /home/data/km0914/raw/os38/km2009_177_57600.raw /home/data/km0914/raw/os38/km2009_177_64800.raw /home/data/km0914/raw/os38/km2009_177_72000.raw /home/data/km0914/raw/os38/km2009_177_79200.raw /home/data/km0914/raw/os38/km2009_178_00000.raw /home/data/km0914/raw/os38/km2009_178_07200.raw /home/data/km0914/raw/os38/km2009_178_14400.raw /home/data/km0914/raw/os38/km2009_178_21600.raw /home/data/km0914/raw/os38/km2009_178_28800.raw /home/data/km0914/raw/os38/km2009_178_36000.raw /home/data/km0914/raw/os38/km2009_178_43200.raw /home/data/km0914/raw/os38/km2009_178_50400.raw /home/data/km0914/raw/os38/km2009_178_57600.raw /home/data/km0914/raw/os38/km2009_178_64800.raw /home/data/km0914/raw/os38/km2009_178_72000.raw /home/data/km0914/raw/os38/km2009_178_79200.raw /home/data/km0914/raw/os38/km2009_179_00000.raw /home/data/km0914/raw/os38/km2009_179_07200.raw /home/data/km0914/raw/os38/km2009_179_14400.raw /home/data/km0914/raw/os38/km2009_179_21600.raw /home/data/km0914/raw/os38/km2009_179_28800.raw /home/data/km0914/raw/os38/km2009_179_36000.raw /home/data/km0914/raw/os38/km2009_179_43200.raw /home/data/km0914/raw/os38/km2009_179_50400.raw /home/data/km0914/raw/os38/km2009_179_57600.raw /home/data/km0914/raw/os38/km2009_179_64800.raw /home/data/km0914/raw/os38/km2009_179_72000.raw /home/data/km0914/raw/os38/km2009_179_79200.raw /home/data/km0914/raw/os38/km2009_180_00000.raw /home/data/km0914/raw/os38/km2009_180_07200.raw /home/data/km0914/raw/os38/km2009_180_14400.raw /home/data/km0914/raw/os38/km2009_180_21600.raw /home/data/km0914/raw/os38/km2009_180_28800.raw /home/data/km0914/raw/os38/km2009_180_36000.raw /home/data/km0914/raw/os38/km2009_180_43200.raw /home/data/km0914/raw/os38/km2009_180_50400.raw /home/data/km0914/raw/os38/km2009_180_57600.raw 2009-06-30 17:33:21,258 DEBUG quick_adcp Tue Jun 30 17:33:21 2009 running quick_adcp.py as follows: --cntfile /home/data/km0914/proc/os38bb/os38bb_qpy.cnt ----- adcpsect variables ------ afilebase a_km cbasename contour dbname a_km dbpath ../adcpdb deeper_boundaries [75, 125, 175, 250, 300, 350, 400, 450, 500, 550, 600, 650, 700, 850, 900, 950, 1000] firstdepth 36 gridnum 100 increment 10 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2009 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.018 adjust_time 1 afilebase a_km allow_reload True auto True bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase km0914 cfgpath /home/data/km0914/proc/os38bb/config cntfile /home/data/km0914/proc/os38bb/os38bb_qpy.cnt commands None cruisename km0914 data_def vmadcp.def datadir /home/data/km0914/raw/os38 datafile_glob *.raw datatype uhdas dbname a_km dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/km0914/raw/os38/km2009_172_66794.raw', '/home/data/km0914/raw/os38/km2009_172_72000.raw', '/home/data/km0914/raw/os38/km2009_172_79200.raw', '/home/data/km0914/raw/os38/km2009_173_00000.raw', '/home/data/km0914/raw/os38/km2009_173_07200.raw', '/home/data/km0914/raw/os38/km2009_173_14400.raw', '/home/data/km0914/raw/os38/km2009_173_21600.raw', '/home/data/km0914/raw/os38/km2009_173_28800.raw', '/home/data/km0914/raw/os38/km2009_173_36000.raw', '/home/data/km0914/raw/os38/km2009_173_43200.raw', '/home/data/km0914/raw/os38/km2009_173_50400.raw', '/home/data/km0914/raw/os38/km2009_173_57600.raw', '/home/data/km0914/raw/os38/km2009_173_64800.raw', '/home/data/km0914/raw/os38/km2009_173_72000.raw', '/home/data/km0914/raw/os38/km2009_173_79200.raw', '/home/data/km0914/raw/os38/km2009_174_00000.raw', '/home/data/km0914/raw/os38/km2009_174_07200.raw', '/home/data/km0914/raw/os38/km2009_174_14400.raw', '/home/data/km0914/raw/os38/km2009_174_21600.raw', '/home/data/km0914/raw/os38/km2009_174_28800.raw', '/home/data/km0914/raw/os38/km2009_174_36000.raw', '/home/data/km0914/raw/os38/km2009_174_43200.raw', '/home/data/km0914/raw/os38/km2009_174_50400.raw', '/home/data/km0914/raw/os38/km2009_174_57600.raw', '/home/data/km0914/raw/os38/km2009_174_64800.raw', '/home/data/km0914/raw/os38/km2009_174_72000.raw', '/home/data/km0914/raw/os38/km2009_174_79200.raw', '/home/data/km0914/raw/os38/km2009_175_00000.raw', '/home/data/km0914/raw/os38/km2009_175_07200.raw', '/home/data/km0914/raw/os38/km2009_175_14400.raw', '/home/data/km0914/raw/os38/km2009_175_21600.raw', '/home/data/km0914/raw/os38/km2009_175_28800.raw', '/home/data/km0914/raw/os38/km2009_175_36000.raw', '/home/data/km0914/raw/os38/km2009_175_43200.raw', '/home/data/km0914/raw/os38/km2009_175_50400.raw', '/home/data/km0914/raw/os38/km2009_175_57600.raw', '/home/data/km0914/raw/os38/km2009_175_64800.raw', '/home/data/km0914/raw/os38/km2009_175_72000.raw', '/home/data/km0914/raw/os38/km2009_175_79200.raw', '/home/data/km0914/raw/os38/km2009_176_00000.raw', '/home/data/km0914/raw/os38/km2009_176_07200.raw', '/home/data/km0914/raw/os38/km2009_176_14400.raw', '/home/data/km0914/raw/os38/km2009_176_21600.raw', '/home/data/km0914/raw/os38/km2009_176_28800.raw', '/home/data/km0914/raw/os38/km2009_176_36000.raw', '/home/data/km0914/raw/os38/km2009_176_43200.raw', '/home/data/km0914/raw/os38/km2009_176_50400.raw', '/home/data/km0914/raw/os38/km2009_176_57600.raw', '/home/data/km0914/raw/os38/km2009_176_64800.raw', '/home/data/km0914/raw/os38/km2009_176_72000.raw', '/home/data/km0914/raw/os38/km2009_176_79200.raw', '/home/data/km0914/raw/os38/km2009_177_00000.raw', '/home/data/km0914/raw/os38/km2009_177_07200.raw', '/home/data/km0914/raw/os38/km2009_177_14400.raw', '/home/data/km0914/raw/os38/km2009_177_21600.raw', '/home/data/km0914/raw/os38/km2009_177_28800.raw', '/home/data/km0914/raw/os38/km2009_177_36000.raw', '/home/data/km0914/raw/os38/km2009_177_43200.raw', '/home/data/km0914/raw/os38/km2009_177_50400.raw', '/home/data/km0914/raw/os38/km2009_177_57600.raw', '/home/data/km0914/raw/os38/km2009_177_64800.raw', '/home/data/km0914/raw/os38/km2009_177_72000.raw', '/home/data/km0914/raw/os38/km2009_177_79200.raw', '/home/data/km0914/raw/os38/km2009_178_00000.raw', '/home/data/km0914/raw/os38/km2009_178_07200.raw', '/home/data/km0914/raw/os38/km2009_178_14400.raw', '/home/data/km0914/raw/os38/km2009_178_21600.raw', '/home/data/km0914/raw/os38/km2009_178_28800.raw', '/home/data/km0914/raw/os38/km2009_178_36000.raw', '/home/data/km0914/raw/os38/km2009_178_43200.raw', '/home/data/km0914/raw/os38/km2009_178_50400.raw', '/home/data/km0914/raw/os38/km2009_178_57600.raw', '/home/data/km0914/raw/os38/km2009_178_64800.raw', '/home/data/km0914/raw/os38/km2009_178_72000.raw', '/home/data/km0914/raw/os38/km2009_178_79200.raw', '/home/data/km0914/raw/os38/km2009_179_00000.raw', '/home/data/km0914/raw/os38/km2009_179_07200.raw', '/home/data/km0914/raw/os38/km2009_179_14400.raw', '/home/data/km0914/raw/os38/km2009_179_21600.raw', '/home/data/km0914/raw/os38/km2009_179_28800.raw', '/home/data/km0914/raw/os38/km2009_179_36000.raw', '/home/data/km0914/raw/os38/km2009_179_43200.raw', '/home/data/km0914/raw/os38/km2009_179_50400.raw', '/home/data/km0914/raw/os38/km2009_179_57600.raw', '/home/data/km0914/raw/os38/km2009_179_64800.raw', '/home/data/km0914/raw/os38/km2009_179_72000.raw', '/home/data/km0914/raw/os38/km2009_179_79200.raw', '/home/data/km0914/raw/os38/km2009_180_00000.raw', '/home/data/km0914/raw/os38/km2009_180_07200.raw', '/home/data/km0914/raw/os38/km2009_180_14400.raw', '/home/data/km0914/raw/os38/km2009_180_21600.raw', '/home/data/km0914/raw/os38/km2009_180_28800.raw', '/home/data/km0914/raw/os38/km2009_180_36000.raw', '/home/data/km0914/raw/os38/km2009_180_43200.raw', '/home/data/km0914/raw/os38/km2009_180_50400.raw', '/home/data/km0914/raw/os38/km2009_180_57600.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 36 fixfile a_km.gps hcorr_inst posmv head_func None help False hidedisplay True howto_lta False howto_ping False instclass os instname os38 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os38'; pingtype = 'bb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'km0914',... 'cfgpath' , '/home/data/km0914/proc/os38bb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_km.gps overview False pgmin 50 ping_headcorr True pingtype bb post_headcorr False proc_yearbase 2009 procdir os38bb progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/km0914/raw/os38/km2009_172_66794.raw', '/home/data/km0914/raw/os38/km2009_172_72000.raw', '/home/data/km0914/raw/os38/km2009_172_79200.raw', '/home/data/km0914/raw/os38/km2009_173_00000.raw', '/home/data/km0914/raw/os38/km2009_173_07200.raw', '/home/data/km0914/raw/os38/km2009_173_14400.raw', '/home/data/km0914/raw/os38/km2009_173_21600.raw', '/home/data/km0914/raw/os38/km2009_173_28800.raw', '/home/data/km0914/raw/os38/km2009_173_36000.raw', '/home/data/km0914/raw/os38/km2009_173_43200.raw', '/home/data/km0914/raw/os38/km2009_173_50400.raw', '/home/data/km0914/raw/os38/km2009_173_57600.raw', '/home/data/km0914/raw/os38/km2009_173_64800.raw', '/home/data/km0914/raw/os38/km2009_173_72000.raw', '/home/data/km0914/raw/os38/km2009_173_79200.raw', '/home/data/km0914/raw/os38/km2009_174_00000.raw', '/home/data/km0914/raw/os38/km2009_174_07200.raw', '/home/data/km0914/raw/os38/km2009_174_14400.raw', '/home/data/km0914/raw/os38/km2009_174_21600.raw', '/home/data/km0914/raw/os38/km2009_174_28800.raw', '/home/data/km0914/raw/os38/km2009_174_36000.raw', '/home/data/km0914/raw/os38/km2009_174_43200.raw', '/home/data/km0914/raw/os38/km2009_174_50400.raw', '/home/data/km0914/raw/os38/km2009_174_57600.raw', '/home/data/km0914/raw/os38/km2009_174_64800.raw', '/home/data/km0914/raw/os38/km2009_174_72000.raw', '/home/data/km0914/raw/os38/km2009_174_79200.raw', '/home/data/km0914/raw/os38/km2009_175_00000.raw', '/home/data/km0914/raw/os38/km2009_175_07200.raw', '/home/data/km0914/raw/os38/km2009_175_14400.raw', '/home/data/km0914/raw/os38/km2009_175_21600.raw', '/home/data/km0914/raw/os38/km2009_175_28800.raw', '/home/data/km0914/raw/os38/km2009_175_36000.raw', '/home/data/km0914/raw/os38/km2009_175_43200.raw', '/home/data/km0914/raw/os38/km2009_175_50400.raw', '/home/data/km0914/raw/os38/km2009_175_57600.raw', '/home/data/km0914/raw/os38/km2009_175_64800.raw', '/home/data/km0914/raw/os38/km2009_175_72000.raw', '/home/data/km0914/raw/os38/km2009_175_79200.raw', '/home/data/km0914/raw/os38/km2009_176_00000.raw', '/home/data/km0914/raw/os38/km2009_176_07200.raw', '/home/data/km0914/raw/os38/km2009_176_14400.raw', '/home/data/km0914/raw/os38/km2009_176_21600.raw', '/home/data/km0914/raw/os38/km2009_176_28800.raw', '/home/data/km0914/raw/os38/km2009_176_36000.raw', '/home/data/km0914/raw/os38/km2009_176_43200.raw', '/home/data/km0914/raw/os38/km2009_176_50400.raw', '/home/data/km0914/raw/os38/km2009_176_57600.raw', '/home/data/km0914/raw/os38/km2009_176_64800.raw', '/home/data/km0914/raw/os38/km2009_176_72000.raw', '/home/data/km0914/raw/os38/km2009_176_79200.raw', '/home/data/km0914/raw/os38/km2009_177_00000.raw', '/home/data/km0914/raw/os38/km2009_177_07200.raw', '/home/data/km0914/raw/os38/km2009_177_14400.raw', '/home/data/km0914/raw/os38/km2009_177_21600.raw', '/home/data/km0914/raw/os38/km2009_177_28800.raw', '/home/data/km0914/raw/os38/km2009_177_36000.raw', '/home/data/km0914/raw/os38/km2009_177_43200.raw', '/home/data/km0914/raw/os38/km2009_177_50400.raw', '/home/data/km0914/raw/os38/km2009_177_57600.raw', '/home/data/km0914/raw/os38/km2009_177_64800.raw', '/home/data/km0914/raw/os38/km2009_177_72000.raw', '/home/data/km0914/raw/os38/km2009_177_79200.raw', '/home/data/km0914/raw/os38/km2009_178_00000.raw', '/home/data/km0914/raw/os38/km2009_178_07200.raw', '/home/data/km0914/raw/os38/km2009_178_14400.raw', '/home/data/km0914/raw/os38/km2009_178_21600.raw', '/home/data/km0914/raw/os38/km2009_178_28800.raw', '/home/data/km0914/raw/os38/km2009_178_36000.raw', '/home/data/km0914/raw/os38/km2009_178_43200.raw', '/home/data/km0914/raw/os38/km2009_178_50400.raw', '/home/data/km0914/raw/os38/km2009_178_57600.raw', '/home/data/km0914/raw/os38/km2009_178_64800.raw', '/home/data/km0914/raw/os38/km2009_178_72000.raw', '/home/data/km0914/raw/os38/km2009_178_79200.raw', '/home/data/km0914/raw/os38/km2009_179_00000.raw', '/home/data/km0914/raw/os38/km2009_179_07200.raw', '/home/data/km0914/raw/os38/km2009_179_14400.raw', '/home/data/km0914/raw/os38/km2009_179_21600.raw', '/home/data/km0914/raw/os38/km2009_179_28800.raw', '/home/data/km0914/raw/os38/km2009_179_36000.raw', '/home/data/km0914/raw/os38/km2009_179_43200.raw', '/home/data/km0914/raw/os38/km2009_179_50400.raw', '/home/data/km0914/raw/os38/km2009_179_57600.raw', '/home/data/km0914/raw/os38/km2009_179_64800.raw', '/home/data/km0914/raw/os38/km2009_179_72000.raw', '/home/data/km0914/raw/os38/km2009_179_79200.raw', '/home/data/km0914/raw/os38/km2009_180_00000.raw', '/home/data/km0914/raw/os38/km2009_180_07200.raw', '/home/data/km0914/raw/os38/km2009_180_14400.raw', '/home/data/km0914/raw/os38/km2009_180_21600.raw', '/home/data/km0914/raw/os38/km2009_180_28800.raw', '/home/data/km0914/raw/os38/km2009_180_36000.raw', '/home/data/km0914/raw/os38/km2009_180_43200.raw', '/home/data/km0914/raw/os38/km2009_180_50400.raw', '/home/data/km0914/raw/os38/km2009_180_57600.raw'] setup_info False skip_avg True smfile refsm.sm steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_matplotlib False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2009 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-06-30 17:33:21,259 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2009-06-30 17:33:21,259 DEBUG quick_run scanning files for time ranges... 2009-06-30 17:33:21,259 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb/scan 2009-06-30 17:33:21,259 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/scan 2009-06-30 17:33:21,260 DEBUG quick_setup running python command "method" 2009-06-30 17:33:21,260 DEBUG call_matlab --> clear all 2009-06-30 17:33:21,265 DEBUG call_matlab <-- >> 2009-06-30 17:33:21,265 DEBUG call_matlab --> close all 2009-06-30 17:33:21,328 DEBUG call_matlab <-- >> 2009-06-30 17:33:21,328 DEBUG call_matlab --> cd /home/data/km0914/proc/os38bb/scan 2009-06-30 17:33:21,331 DEBUG call_matlab <-- >> 2009-06-30 17:33:21,331 DEBUG call_matlab --> scan_tmp 2009-06-30 17:33:22,383 DEBUG call_matlab <-- getting config files from "/home/data/km0914/proc/os38bb/config" running "km0914_cfg.m" running "km0914_proc.m" writing scan info to a_km.scn >> 2009-06-30 17:33:22,383 DEBUG quick_run writing time range from a_km.scn to a_km.tr 2009-06-30 17:33:22,384 DEBUG quick_run getting scan time range 2009-06-30 17:33:22,384 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:22,384 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/scan 2009-06-30 17:33:22,384 DEBUG quick_setup running python command "method" 2009-06-30 17:33:22,385 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-06-30 17:33:22,387 DEBUG quick_subs extracting time range 2009-06-30 17:33:22,388 DEBUG quick_subs start_end_time 2009/06/22 18:33:20 to 2009/06/30 17:32:45 2009-06-30 17:33:22,389 DEBUG quick_subs dd0: 172.773148 dd1: 180.731076 2009-06-30 17:33:22,389 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/km0914/proc/os38bb 2009-06-30 17:33:22,389 DEBUG quick_adcp looking for database with adcpdb/a_km*.blk 2009-06-30 17:33:22,391 DEBUG quick_adcp database found: listing blocks 2009-06-30 17:33:22,391 DEBUG quick_subs removing a_kmdir.blk 2009-06-30 17:33:22,392 DEBUG quick_subs about to run mkblkdir 2009-06-30 17:33:22,392 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-06-30 17:33:22,393 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-06-30 17:33:22,407 DEBUG quick_subs database passes. 2009-06-30 17:33:22,408 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-06-30 17:33:22,408 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:22,408 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/adcpdb 2009-06-30 17:33:22,409 DEBUG quick_setup running python command "method" 2009-06-30 17:33:22,409 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-06-30 17:33:22,410 DEBUG quick_subs extracting time range 2009-06-30 17:33:22,410 DEBUG quick_subs start_end_time 2009/06/22 18:38:32 to 2009/06/30 17:01:45 2009-06-30 17:33:22,410 DEBUG quick_subs dd0: 172.776759 dd1: 180.709549 2009-06-30 17:33:22,411 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-06-30 17:33:22,411 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:22,411 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/adcpdb 2009-06-30 17:33:22,411 DEBUG quick_setup running python command "method" 2009-06-30 17:33:22,412 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-06-30 17:33:22,412 DEBUG quick_subs extracting time range 2009-06-30 17:33:22,413 DEBUG quick_subs start_end_time 2009/06/22 18:38:32 to 2009/06/30 17:01:45 2009-06-30 17:33:22,413 DEBUG quick_subs dd0: 172.776759 dd1: 180.709549 2009-06-30 17:33:22,413 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2009-06-30 17:33:22,414 DEBUG quick_adcp origdb_time_range is 2009/06/22 18:38:32 to 2009/06/30 17:01:45 2009-06-30 17:33:22,414 DEBUG quick_adcp (172.776759 to 180.709549) 2009-06-30 17:33:22,414 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2009-06-30 17:33:22,415 DEBUG quick_subs getting current (remaining after deletion) database times 2009-06-30 17:33:22,415 DEBUG quick_subs ['adcpdb/a_kmdir.blk', 'adcpdb/a_km003.blk', 'adcpdb/a_km001.blk', 'adcpdb/a_km011.blk', 'adcpdb/a_km007.blk', 'adcpdb/a_km009.blk', 'adcpdb/a_km012.blk', 'adcpdb/a_km008.blk', 'adcpdb/a_km006.blk', 'adcpdb/a_km004.blk', 'adcpdb/a_km002.blk', 'adcpdb/a_km010.blk', 'adcpdb/a_km005.blk', 'adcpdb/a_km013.blk', 'adcpdb/a_km016.blk', 'adcpdb/a_km014.blk', 'adcpdb/a_km015.blk'] 2009-06-30 17:33:22,416 DEBUG quick_subs length is 17 2009-06-30 17:33:22,416 DEBUG quick_subs removing a_kmdir.blk 2009-06-30 17:33:22,416 DEBUG quick_subs about to run mkblkdir 2009-06-30 17:33:22,417 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-06-30 17:33:22,417 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-06-30 17:33:22,428 DEBUG quick_subs database passes. 2009-06-30 17:33:22,429 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-06-30 17:33:22,429 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:22,430 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/adcpdb 2009-06-30 17:33:22,430 DEBUG quick_setup running python command "method" 2009-06-30 17:33:22,430 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-06-30 17:33:22,431 DEBUG quick_subs extracting time range 2009-06-30 17:33:22,431 DEBUG quick_subs start_end_time 2009/06/22 18:38:32 to 2009/06/30 17:01:45 2009-06-30 17:33:22,432 DEBUG quick_subs dd0: 172.776759 dd1: 180.709549 2009-06-30 17:33:22,432 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-06-30 17:33:22,433 DEBUG quick_subs reading time range 2009-06-30 17:33:22,433 DEBUG quick_subs start_end_time 2009/06/22 18:38:32 to 2009/06/30 17:01:45 2009-06-30 17:33:22,433 DEBUG quick_subs dd0: 172.776759 dd1: 180.709549 2009-06-30 17:33:22,434 INFO quick_subs Tue Jun 30 17:33:22 2009 2009-06-30 17:33:22,434 INFO quick_subs checking database time range by listblk 2009-06-30 17:33:22,435 DEBUG quick_subs removing a_kmdir.blk 2009-06-30 17:33:22,435 DEBUG quick_subs about to run mkblkdir 2009-06-30 17:33:22,435 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-06-30 17:33:22,436 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-06-30 17:33:22,449 DEBUG quick_subs database passes. 2009-06-30 17:33:22,450 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-06-30 17:33:22,450 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:22,451 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/adcpdb 2009-06-30 17:33:22,451 DEBUG quick_setup running python command "method" 2009-06-30 17:33:22,451 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-06-30 17:33:22,452 DEBUG quick_subs extracting time range 2009-06-30 17:33:22,453 DEBUG quick_subs start_end_time 2009/06/22 18:38:32 to 2009/06/30 17:01:45 2009-06-30 17:33:22,453 DEBUG quick_subs dd0: 172.776759 dd1: 180.709549 2009-06-30 17:33:22,456 INFO quick_subs found line /* 0 n= 146 a_km001.blk */ 2009/06/22 18:38:32 to 2009/06/23 07:02:54 2009-06-30 17:33:22,456 INFO quick_subs found line /* 1 n= 146 a_km002.blk */ 2009/06/23 07:08:00 to 2009/06/23 19:27:28 2009-06-30 17:33:22,456 INFO quick_subs found line /* 2 n= 146 a_km003.blk */ 2009/06/23 19:32:34 to 2009/06/24 08:07:19 2009-06-30 17:33:22,457 INFO quick_subs found line /* 3 n= 146 a_km004.blk */ 2009/06/24 08:12:25 to 2009/06/24 20:31:53 2009-06-30 17:33:22,457 INFO quick_subs found line /* 4 n= 146 a_km005.blk */ 2009/06/24 20:36:59 to 2009/06/25 09:16:50 2009-06-30 17:33:22,457 INFO quick_subs found line /* 5 n= 146 a_km006.blk */ 2009/06/25 09:21:56 to 2009/06/25 21:46:30 2009-06-30 17:33:22,458 INFO quick_subs found line /* 6 n= 146 a_km007.blk */ 2009/06/25 21:51:36 to 2009/06/26 10:11:04 2009-06-30 17:33:22,458 INFO quick_subs found line /* 7 n= 146 a_km008.blk */ 2009/06/26 10:16:10 to 2009/06/26 22:35:38 2009-06-30 17:33:22,458 INFO quick_subs found line /* 8 n= 146 a_km009.blk */ 2009/06/26 22:40:44 to 2009/06/27 11:00:11 2009-06-30 17:33:22,458 INFO quick_subs found line /* 9 n= 146 a_km010.blk */ 2009/06/27 11:05:17 to 2009/06/27 23:24:45 2009-06-30 17:33:22,459 INFO quick_subs found line /* 10 n= 146 a_km011.blk */ 2009/06/27 23:29:51 to 2009/06/28 11:54:25 2009-06-30 17:33:22,459 INFO quick_subs found line /* 11 n= 146 a_km012.blk */ 2009/06/28 11:59:31 to 2009/06/29 00:18:58 2009-06-30 17:33:22,459 INFO quick_subs found line /* 12 n= 146 a_km013.blk */ 2009/06/29 00:24:04 to 2009/06/29 12:43:32 2009-06-30 17:33:22,460 INFO quick_subs found line /* 13 n= 146 a_km014.blk */ 2009/06/29 12:48:38 to 2009/06/30 01:13:12 2009-06-30 17:33:22,460 INFO quick_subs found line /* 14 n= 146 a_km015.blk */ 2009/06/30 01:18:18 to 2009/06/30 13:37:45 2009-06-30 17:33:22,460 INFO quick_subs found line /* 15 n= 40 a_km016.blk */ 2009/06/30 13:42:51 to 2009/06/30 17:01:45 2009-06-30 17:33:22,461 INFO quick_subs scan data start at 172.7731481 2009-06-30 17:33:22,461 INFO quick_subs scan time range: 2009/06/22 18:33:20 to 2009/06/30 17:32:45 2009-06-30 17:33:22,461 INFO quick_subs codasdb ends at 180.7095486 (2009/06/30 17:01:45) 2009-06-30 17:33:22,461 DEBUG quick_subs ... changed dirs, in /home/data/km0914/proc/os38bb/adcpdb 2009-06-30 17:33:22,462 DEBUG quick_subs deleting these files: ['a_km016.blk'] 2009-06-30 17:33:22,463 DEBUG quick_subs getting current (remaining after deletion) database times 2009-06-30 17:33:22,463 DEBUG quick_subs ['adcpdb/a_km003.blk', 'adcpdb/a_km001.blk', 'adcpdb/a_km011.blk', 'adcpdb/a_km007.blk', 'adcpdb/a_km009.blk', 'adcpdb/a_km012.blk', 'adcpdb/a_km008.blk', 'adcpdb/a_km006.blk', 'adcpdb/a_km004.blk', 'adcpdb/a_km002.blk', 'adcpdb/a_km010.blk', 'adcpdb/a_km005.blk', 'adcpdb/a_km013.blk', 'adcpdb/a_km014.blk', 'adcpdb/a_km015.blk'] 2009-06-30 17:33:22,464 DEBUG quick_subs length is 15 2009-06-30 17:33:22,464 DEBUG quick_subs about to run mkblkdir 2009-06-30 17:33:22,464 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-06-30 17:33:22,465 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-06-30 17:33:22,478 DEBUG quick_subs database passes. 2009-06-30 17:33:22,478 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-06-30 17:33:22,479 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:22,479 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/adcpdb 2009-06-30 17:33:22,479 DEBUG quick_setup running python command "method" 2009-06-30 17:33:22,479 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-06-30 17:33:22,480 DEBUG quick_subs extracting time range 2009-06-30 17:33:22,480 DEBUG quick_subs start_end_time 2009/06/22 18:38:32 to 2009/06/30 13:37:45 2009-06-30 17:33:22,480 DEBUG quick_subs dd0: 172.776759 dd1: 180.567882 2009-06-30 17:33:22,480 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-06-30 17:33:22,481 DEBUG quick_subs reading time range 2009-06-30 17:33:22,481 DEBUG quick_subs start_end_time 2009/06/22 18:38:32 to 2009/06/30 13:37:45 2009-06-30 17:33:22,481 DEBUG quick_subs dd0: 172.776759 dd1: 180.567882 2009-06-30 17:33:22,481 DEBUG quick_subs codas database currently goes from 2009/06/22 18:38:32 to 2009/06/30 13:37:45 2009-06-30 17:33:22,482 DEBUG quick_subs (172.776759 to 180.567882) 2009-06-30 17:33:22,482 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009found existing adcpdb blocks: %s 010found existing adcpdb blocks: %s 011found existing adcpdb blocks: %s 012found existing adcpdb blocks: %s 013found existing adcpdb blocks: %s 014found existing adcpdb blocks: %s 015 2009-06-30 17:33:22,483 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 011 012 013 014 015 016 2009-06-30 17:33:22,484 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015'] 2009-06-30 17:33:22,484 DEBUG quick_subs checked: unloaded blkstrs: ['016'] 2009-06-30 17:33:22,484 DEBUG quick_subs first unloaded file is load/ens_blk016.cmd 2009-06-30 17:33:22,485 DEBUG quick_subs data goes from 2009/06/30 13:42:51 to 2009/06/30 17:32:45 2009-06-30 17:33:22,485 DEBUG quick_subs (180.571424 to 180.731076) 2009-06-30 17:33:22,485 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/km0914/raw/os38/km2009_172_66794.raw /home/data/km0914/raw/os38/km2009_172_72000.raw /home/data/km0914/raw/os38/km2009_172_79200.raw /home/data/km0914/raw/os38/km2009_173_00000.raw /home/data/km0914/raw/os38/km2009_173_07200.raw /home/data/km0914/raw/os38/km2009_173_14400.raw /home/data/km0914/raw/os38/km2009_173_21600.raw /home/data/km0914/raw/os38/km2009_173_28800.raw /home/data/km0914/raw/os38/km2009_173_36000.raw /home/data/km0914/raw/os38/km2009_173_43200.raw /home/data/km0914/raw/os38/km2009_173_50400.raw /home/data/km0914/raw/os38/km2009_173_57600.raw /home/data/km0914/raw/os38/km2009_173_64800.raw /home/data/km0914/raw/os38/km2009_173_72000.raw /home/data/km0914/raw/os38/km2009_173_79200.raw /home/data/km0914/raw/os38/km2009_174_00000.raw /home/data/km0914/raw/os38/km2009_174_07200.raw /home/data/km0914/raw/os38/km2009_174_14400.raw /home/data/km0914/raw/os38/km2009_174_21600.raw /home/data/km0914/raw/os38/km2009_174_28800.raw /home/data/km0914/raw/os38/km2009_174_36000.raw /home/data/km0914/raw/os38/km2009_174_43200.raw /home/data/km0914/raw/os38/km2009_174_50400.raw /home/data/km0914/raw/os38/km2009_174_57600.raw /home/data/km0914/raw/os38/km2009_174_64800.raw /home/data/km0914/raw/os38/km2009_174_72000.raw /home/data/km0914/raw/os38/km2009_174_79200.raw /home/data/km0914/raw/os38/km2009_175_00000.raw /home/data/km0914/raw/os38/km2009_175_07200.raw /home/data/km0914/raw/os38/km2009_175_14400.raw /home/data/km0914/raw/os38/km2009_175_21600.raw /home/data/km0914/raw/os38/km2009_175_28800.raw /home/data/km0914/raw/os38/km2009_175_36000.raw /home/data/km0914/raw/os38/km2009_175_43200.raw /home/data/km0914/raw/os38/km2009_175_50400.raw /home/data/km0914/raw/os38/km2009_175_57600.raw /home/data/km0914/raw/os38/km2009_175_64800.raw /home/data/km0914/raw/os38/km2009_175_72000.raw /home/data/km0914/raw/os38/km2009_175_79200.raw /home/data/km0914/raw/os38/km2009_176_00000.raw /home/data/km0914/raw/os38/km2009_176_07200.raw /home/data/km0914/raw/os38/km2009_176_14400.raw /home/data/km0914/raw/os38/km2009_176_21600.raw /home/data/km0914/raw/os38/km2009_176_28800.raw /home/data/km0914/raw/os38/km2009_176_36000.raw /home/data/km0914/raw/os38/km2009_176_43200.raw /home/data/km0914/raw/os38/km2009_176_50400.raw /home/data/km0914/raw/os38/km2009_176_57600.raw /home/data/km0914/raw/os38/km2009_176_64800.raw /home/data/km0914/raw/os38/km2009_176_72000.raw /home/data/km0914/raw/os38/km2009_176_79200.raw /home/data/km0914/raw/os38/km2009_177_00000.raw /home/data/km0914/raw/os38/km2009_177_07200.raw /home/data/km0914/raw/os38/km2009_177_14400.raw /home/data/km0914/raw/os38/km2009_177_21600.raw /home/data/km0914/raw/os38/km2009_177_28800.raw /home/data/km0914/raw/os38/km2009_177_36000.raw /home/data/km0914/raw/os38/km2009_177_43200.raw /home/data/km0914/raw/os38/km2009_177_50400.raw /home/data/km0914/raw/os38/km2009_177_57600.raw /home/data/km0914/raw/os38/km2009_177_64800.raw /home/data/km0914/raw/os38/km2009_177_72000.raw /home/data/km0914/raw/os38/km2009_177_79200.raw /home/data/km0914/raw/os38/km2009_178_00000.raw /home/data/km0914/raw/os38/km2009_178_07200.raw /home/data/km0914/raw/os38/km2009_178_14400.raw /home/data/km0914/raw/os38/km2009_178_21600.raw /home/data/km0914/raw/os38/km2009_178_28800.raw /home/data/km0914/raw/os38/km2009_178_36000.raw /home/data/km0914/raw/os38/km2009_178_43200.raw /home/data/km0914/raw/os38/km2009_178_50400.raw /home/data/km0914/raw/os38/km2009_178_57600.raw /home/data/km0914/raw/os38/km2009_178_64800.raw /home/data/km0914/raw/os38/km2009_178_72000.raw /home/data/km0914/raw/os38/km2009_178_79200.raw /home/data/km0914/raw/os38/km2009_179_00000.raw /home/data/km0914/raw/os38/km2009_179_07200.raw /home/data/km0914/raw/os38/km2009_179_14400.raw /home/data/km0914/raw/os38/km2009_179_21600.raw /home/data/km0914/raw/os38/km2009_179_28800.raw /home/data/km0914/raw/os38/km2009_179_36000.raw /home/data/km0914/raw/os38/km2009_179_43200.raw /home/data/km0914/raw/os38/km2009_179_50400.raw /home/data/km0914/raw/os38/km2009_179_57600.raw /home/data/km0914/raw/os38/km2009_179_64800.raw /home/data/km0914/raw/os38/km2009_179_72000.raw /home/data/km0914/raw/os38/km2009_179_79200.raw /home/data/km0914/raw/os38/km2009_180_00000.raw /home/data/km0914/raw/os38/km2009_180_07200.raw /home/data/km0914/raw/os38/km2009_180_14400.raw /home/data/km0914/raw/os38/km2009_180_21600.raw /home/data/km0914/raw/os38/km2009_180_28800.raw /home/data/km0914/raw/os38/km2009_180_36000.raw /home/data/km0914/raw/os38/km2009_180_43200.raw /home/data/km0914/raw/os38/km2009_180_50400.raw /home/data/km0914/raw/os38/km2009_180_57600.raw 2009-06-30 17:33:22,485 INFO quick_run Tue Jun 30 17:33:22 2009 2009-06-30 17:33:22,485 INFO quick_run about to load uhdas files 2009-06-30 17:33:22,486 INFO quick_run /home/data/km0914/raw/os38/km2009_172_66794.raw /home/data/km0914/raw/os38/km2009_172_72000.raw /home/data/km0914/raw/os38/km2009_172_79200.raw /home/data/km0914/raw/os38/km2009_173_00000.raw /home/data/km0914/raw/os38/km2009_173_07200.raw /home/data/km0914/raw/os38/km2009_173_14400.raw /home/data/km0914/raw/os38/km2009_173_21600.raw /home/data/km0914/raw/os38/km2009_173_28800.raw /home/data/km0914/raw/os38/km2009_173_36000.raw /home/data/km0914/raw/os38/km2009_173_43200.raw /home/data/km0914/raw/os38/km2009_173_50400.raw /home/data/km0914/raw/os38/km2009_173_57600.raw /home/data/km0914/raw/os38/km2009_173_64800.raw /home/data/km0914/raw/os38/km2009_173_72000.raw /home/data/km0914/raw/os38/km2009_173_79200.raw /home/data/km0914/raw/os38/km2009_174_00000.raw /home/data/km0914/raw/os38/km2009_174_07200.raw /home/data/km0914/raw/os38/km2009_174_14400.raw /home/data/km0914/raw/os38/km2009_174_21600.raw /home/data/km0914/raw/os38/km2009_174_28800.raw /home/data/km0914/raw/os38/km2009_174_36000.raw /home/data/km0914/raw/os38/km2009_174_43200.raw /home/data/km0914/raw/os38/km2009_174_50400.raw /home/data/km0914/raw/os38/km2009_174_57600.raw /home/data/km0914/raw/os38/km2009_174_64800.raw /home/data/km0914/raw/os38/km2009_174_72000.raw /home/data/km0914/raw/os38/km2009_174_79200.raw /home/data/km0914/raw/os38/km2009_175_00000.raw /home/data/km0914/raw/os38/km2009_175_07200.raw /home/data/km0914/raw/os38/km2009_175_14400.raw /home/data/km0914/raw/os38/km2009_175_21600.raw /home/data/km0914/raw/os38/km2009_175_28800.raw /home/data/km0914/raw/os38/km2009_175_36000.raw /home/data/km0914/raw/os38/km2009_175_43200.raw /home/data/km0914/raw/os38/km2009_175_50400.raw /home/data/km0914/raw/os38/km2009_175_57600.raw /home/data/km0914/raw/os38/km2009_175_64800.raw /home/data/km0914/raw/os38/km2009_175_72000.raw /home/data/km0914/raw/os38/km2009_175_79200.raw /home/data/km0914/raw/os38/km2009_176_00000.raw /home/data/km0914/raw/os38/km2009_176_07200.raw /home/data/km0914/raw/os38/km2009_176_14400.raw /home/data/km0914/raw/os38/km2009_176_21600.raw /home/data/km0914/raw/os38/km2009_176_28800.raw /home/data/km0914/raw/os38/km2009_176_36000.raw /home/data/km0914/raw/os38/km2009_176_43200.raw /home/data/km0914/raw/os38/km2009_176_50400.raw /home/data/km0914/raw/os38/km2009_176_57600.raw /home/data/km0914/raw/os38/km2009_176_64800.raw /home/data/km0914/raw/os38/km2009_176_72000.raw /home/data/km0914/raw/os38/km2009_176_79200.raw /home/data/km0914/raw/os38/km2009_177_00000.raw /home/data/km0914/raw/os38/km2009_177_07200.raw /home/data/km0914/raw/os38/km2009_177_14400.raw /home/data/km0914/raw/os38/km2009_177_21600.raw /home/data/km0914/raw/os38/km2009_177_28800.raw /home/data/km0914/raw/os38/km2009_177_36000.raw /home/data/km0914/raw/os38/km2009_177_43200.raw /home/data/km0914/raw/os38/km2009_177_50400.raw /home/data/km0914/raw/os38/km2009_177_57600.raw /home/data/km0914/raw/os38/km2009_177_64800.raw /home/data/km0914/raw/os38/km2009_177_72000.raw /home/data/km0914/raw/os38/km2009_177_79200.raw /home/data/km0914/raw/os38/km2009_178_00000.raw /home/data/km0914/raw/os38/km2009_178_07200.raw /home/data/km0914/raw/os38/km2009_178_14400.raw /home/data/km0914/raw/os38/km2009_178_21600.raw /home/data/km0914/raw/os38/km2009_178_28800.raw /home/data/km0914/raw/os38/km2009_178_36000.raw /home/data/km0914/raw/os38/km2009_178_43200.raw /home/data/km0914/raw/os38/km2009_178_50400.raw /home/data/km0914/raw/os38/km2009_178_57600.raw /home/data/km0914/raw/os38/km2009_178_64800.raw /home/data/km0914/raw/os38/km2009_178_72000.raw /home/data/km0914/raw/os38/km2009_178_79200.raw /home/data/km0914/raw/os38/km2009_179_00000.raw /home/data/km0914/raw/os38/km2009_179_07200.raw /home/data/km0914/raw/os38/km2009_179_14400.raw /home/data/km0914/raw/os38/km2009_179_21600.raw /home/data/km0914/raw/os38/km2009_179_28800.raw /home/data/km0914/raw/os38/km2009_179_36000.raw /home/data/km0914/raw/os38/km2009_179_43200.raw /home/data/km0914/raw/os38/km2009_179_50400.raw /home/data/km0914/raw/os38/km2009_179_57600.raw /home/data/km0914/raw/os38/km2009_179_64800.raw /home/data/km0914/raw/os38/km2009_179_72000.raw /home/data/km0914/raw/os38/km2009_179_79200.raw /home/data/km0914/raw/os38/km2009_180_00000.raw /home/data/km0914/raw/os38/km2009_180_07200.raw /home/data/km0914/raw/os38/km2009_180_14400.raw /home/data/km0914/raw/os38/km2009_180_21600.raw /home/data/km0914/raw/os38/km2009_180_28800.raw /home/data/km0914/raw/os38/km2009_180_36000.raw /home/data/km0914/raw/os38/km2009_180_43200.raw /home/data/km0914/raw/os38/km2009_180_50400.raw /home/data/km0914/raw/os38/km2009_180_57600.raw 2009-06-30 17:33:22,486 DEBUG quick_setup load/ldcodas.tmp exists 2009-06-30 17:33:22,486 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:22,486 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/load 2009-06-30 17:33:22,486 DEBUG quick_setup running python command "method" 2009-06-30 17:33:22,487 DEBUG quick_subs in /home/data/km0914/proc/os38bb/load 2009-06-30 17:33:22,487 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015'] 2009-06-30 17:33:22,488 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016'] 2009-06-30 17:33:22,488 DEBUG quick_subs starttime is 2009/06/30 13:42:51 2009-06-30 17:33:22,488 DEBUG quick_subs RESETTING thisload_time_range 2009-06-30 17:33:22,489 DEBUG quick_subs time range of data to be loaded: 2009/06/30 13:42:51 to 2009/06/30 17:32:45 2009-06-30 17:33:22,489 DEBUG quick_subs data startdd 180.571424 data enddd 180.731076 2009-06-30 17:33:22,489 DEBUG quick_subs about to load from these cmd files ['ens_blk016.cmd'] 2009-06-30 17:33:22,491 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_km DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2009 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk016.cmd 2009-06-30 17:33:22,492 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2009-06-30 17:33:22,511 DEBUG quick_subs removing a_kmdir.blk 2009-06-30 17:33:22,511 DEBUG quick_subs about to run mkblkdir 2009-06-30 17:33:22,511 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-06-30 17:33:22,512 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-06-30 17:33:22,521 DEBUG quick_subs database passes. 2009-06-30 17:33:22,521 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-06-30 17:33:22,521 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:22,521 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/adcpdb 2009-06-30 17:33:22,522 DEBUG quick_setup running python command "method" 2009-06-30 17:33:22,522 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-06-30 17:33:22,522 DEBUG quick_subs extracting time range 2009-06-30 17:33:22,523 DEBUG quick_subs start_end_time 2009/06/22 18:38:32 to 2009/06/30 17:32:21 2009-06-30 17:33:22,523 DEBUG quick_subs dd0: 172.776759 dd1: 180.730799 2009-06-30 17:33:22,523 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-06-30 17:33:22,523 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:22,524 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/adcpdb 2009-06-30 17:33:22,524 DEBUG quick_setup running python command "method" 2009-06-30 17:33:22,524 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-06-30 17:33:22,524 DEBUG quick_subs extracting time range 2009-06-30 17:33:22,525 DEBUG quick_subs start_end_time 2009/06/22 18:38:32 to 2009/06/30 17:32:21 2009-06-30 17:33:22,525 DEBUG quick_subs dd0: 172.776759 dd1: 180.730799 2009-06-30 17:33:22,525 DEBUG quick_adcp loaded_time_range is 2009/06/22 18:38:32 to 2009/06/30 17:32:21 2009-06-30 17:33:22,526 DEBUG quick_adcp (172.776759 to 180.730799) 2009-06-30 17:33:22,526 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:22,526 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/adcpdb 2009-06-30 17:33:22,526 DEBUG quick_setup running python command "method" 2009-06-30 17:33:22,526 DEBUG quick_subs dbname: a_km output: a_km.cnh time_ranges: all 2009-06-30 17:33:22,527 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2009-06-30 17:33:22,543 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2009-06-30 17:33:22,544 DEBUG quick_run executing commands from /home/data/km0914/proc/os38bb/edit 2009-06-30 17:33:22,544 DEBUG quick_run setup.m exists. not replacing 2009-06-30 17:33:22,544 DEBUG quick_run asetup.m exists. not replacing 2009-06-30 17:33:22,544 DEBUG quick_run aflagit_setup.m exists. not replacing 2009-06-30 17:33:22,544 DEBUG quick_run ------------ step 4: run setflags ------------- 2009-06-30 17:33:22,544 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:22,545 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/edit 2009-06-30 17:33:22,545 DEBUG quick_setup running python command "method" 2009-06-30 17:33:22,545 DEBUG quick_subs dbname: ../adcpdb/a_km pg_min: 50 set_range_bit time_ranges: all 2009-06-30 17:33:22,545 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-06-30 17:33:22,598 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2009-06-30 17:33:22,599 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:22,599 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/nav 2009-06-30 17:33:22,599 DEBUG quick_setup running python command "method" 2009-06-30 17:33:22,602 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2009-06-30 17:33:22,602 DEBUG quick_run hcorr_inst is posmv 2009-06-30 17:33:22,603 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2009-06-30 17:33:22,603 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:22,603 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/cal/rotate 2009-06-30 17:33:22,603 DEBUG quick_setup running python command "method" 2009-06-30 17:33:22,603 DEBUG quick_subs dbname: ../../adcpdb/a_km output: scn.hdg step_size= 1 year_base= 2009 time_ranges: all 2009-06-30 17:33:22,604 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2009-06-30 17:33:22,631 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:22,631 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/cal/rotate 2009-06-30 17:33:22,631 DEBUG quick_setup running python command "method" 2009-06-30 17:33:23,054 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') hcorfile = 'ens_hcorr.asc'; proc_yearbase = 2009; cruiseid = 'km0914'; if exist(hcorfile) plot_hcorstats('comment', cruiseid,... 'proc_yearbase', proc_yearbase,... 'plot_ddrange', 1,... 'plottype','fancy',... 'hcorfile', hcorfile,... 'gps_attname', 'posmv',... 'cruiseid', cruiseid,... 'outfilebase', 'hcorr'); end 2009-06-30 17:33:25,230 DEBUG quick_run ------------ step 7: rotate ------------- 2009-06-30 17:33:25,231 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:25,231 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/cal/rotate 2009-06-30 17:33:25,231 DEBUG quick_setup running python command "method" 2009-06-30 17:33:25,264 DEBUG quick_subs last rotated time from log file: 2009/06/30 17:02:09 2009-06-30 17:33:25,264 DEBUG quick_subs time range of currently loaded data: 2009/06/22 18:38:32 to 2009/06/30 17:32:21 2009-06-30 17:33:25,264 DEBUG quick_subs (172.776759 to 180.730799) 2009-06-30 17:33:25,265 DEBUG quick_setup cal/rotate/rotate.tmp exists 2009-06-30 17:33:25,266 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:25,266 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/cal/rotate 2009-06-30 17:33:25,266 DEBUG quick_setup running python command "method" 2009-06-30 17:33:25,266 DEBUG quick_subs DB_NAME: ../../adcpdb/a_km LOG_FILE: rotate.log TIME_RANGE: 2009/06/30 13:42:51 to 2009/06/30 17:32:45 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2009 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2009-06-30 17:33:25,267 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2009-06-30 17:33:25,283 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-06-30 17:33:25,283 DEBUG quick_setup nav/as_nav.tmp exists 2009-06-30 17:33:25,283 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:25,284 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/nav 2009-06-30 17:33:25,284 DEBUG quick_setup running python command "method" 2009-06-30 17:33:25,284 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/06/22 18:38:32 to 2009/06/30 17:32:21 /* the whole time range */ 2009-06-30 17:33:25,284 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-06-30 17:33:25,350 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-06-30 17:33:25,350 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:25,350 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/nav 2009-06-30 17:33:25,350 DEBUG quick_setup running python command "method" 2009-06-30 17:33:25,351 DEBUG quick_subs fix_file_type: simple reference_file: a_km.nav fix_file: a_km.gps output: a_km.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-06-30 17:33:25,351 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-06-30 17:33:25,395 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-06-30 17:33:25,395 DEBUG quick_setup nav/smoothr.tmp exists 2009-06-30 17:33:25,396 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:25,396 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/nav 2009-06-30 17:33:25,396 DEBUG quick_setup running python command "method" 2009-06-30 17:33:25,396 DEBUG quick_subs reference_file: a_km.nav refabs_output: a_km.ref output: a_km.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-06-30 17:33:25,397 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-06-30 17:33:25,608 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:25,609 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/nav 2009-06-30 17:33:25,609 DEBUG quick_setup running python command "method" 2009-06-30 17:33:25,609 DEBUG call_matlab --> clear all 2009-06-30 17:33:25,647 DEBUG call_matlab <-- >> 2009-06-30 17:33:25,647 DEBUG call_matlab --> close all 2009-06-30 17:33:25,736 DEBUG call_matlab <-- >> 2009-06-30 17:33:25,736 DEBUG call_matlab --> cd /home/data/km0914/proc/os38bb/nav 2009-06-30 17:33:25,739 DEBUG call_matlab <-- >> 2009-06-30 17:33:25,739 DEBUG call_matlab --> refsm 2009-06-30 17:33:26,998 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_km opened Searching CODAS database ==> ../adcpdb/a_km for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 2236 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 90 percent done... 100 percent done... >> 2009-06-30 17:33:26,998 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-06-30 17:33:26,998 DEBUG quick_setup nav/putnav.tmp exists 2009-06-30 17:33:26,999 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:26,999 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/nav 2009-06-30 17:33:26,999 DEBUG quick_setup running python command "method" 2009-06-30 17:33:26,999 DEBUG quick_subs dbname: ../adcpdb/a_km position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-06-30 17:33:27,000 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-06-30 17:33:27,096 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-06-30 17:33:27,097 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:27,097 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/nav 2009-06-30 17:33:27,097 DEBUG quick_setup running python command "method" 2009-06-30 17:33:27,099 DEBUG quick_subs Created callrtmp.m 2009-06-30 17:33:27,099 DEBUG call_matlab --> clear all 2009-06-30 17:33:27,109 DEBUG call_matlab <-- >> 2009-06-30 17:33:27,110 DEBUG call_matlab --> close all 2009-06-30 17:33:27,195 DEBUG call_matlab <-- >> 2009-06-30 17:33:27,195 DEBUG call_matlab --> cd /home/data/km0914/proc/os38bb/nav 2009-06-30 17:33:27,199 DEBUG call_matlab <-- >> 2009-06-30 17:33:27,199 DEBUG call_matlab --> callrtmp_tmp 2009-06-30 17:33:29,537 DEBUG call_matlab <-- cruise = km0914 cruise = km0914 cruise = km0914 cruise = km0914 cruise = km0914 >> 2009-06-30 17:33:29,537 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2009-06-30 17:33:29,538 DEBUG quick_run find profile flags ------------ *** ------------- 2009-06-30 17:33:29,538 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:29,538 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/edit 2009-06-30 17:33:29,538 DEBUG quick_setup running python command "method" 2009-06-30 17:33:31,102 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2009-06-30 17:33:31,102 DEBUG quick_run starting in: /home/data/km0914/proc/os38bb 2009-06-30 17:33:31,102 DEBUG quick_run executing commands from: edit 2009-06-30 17:33:31,105 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_km abottom_tmp.asc 2009-06-30 17:33:31,111 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_km abadprf_tmp.asc 2009-06-30 17:33:31,115 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_km abadbin_tmp.asc 2009-06-30 17:33:31,129 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_km 2009-06-30 17:33:31,135 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-06-30 17:33:31,524 DEBUG quick_run changing directories back to /home/data/km0914/proc/os38bb 2009-06-30 17:33:31,524 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2009-06-30 17:33:31,524 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-06-30 17:33:31,525 DEBUG quick_setup nav/as_nav.tmp exists 2009-06-30 17:33:31,525 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:31,525 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/nav 2009-06-30 17:33:31,526 DEBUG quick_setup running python command "method" 2009-06-30 17:33:31,526 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/06/22 18:38:32 to 2009/06/30 17:32:21 /* the whole time range */ 2009-06-30 17:33:31,526 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-06-30 17:33:31,595 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-06-30 17:33:31,596 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:31,596 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/nav 2009-06-30 17:33:31,596 DEBUG quick_setup running python command "method" 2009-06-30 17:33:31,596 DEBUG quick_subs fix_file_type: simple reference_file: a_km.nav fix_file: a_km.gps output: a_km.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-06-30 17:33:31,597 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-06-30 17:33:31,646 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-06-30 17:33:31,646 DEBUG quick_setup nav/smoothr.tmp exists 2009-06-30 17:33:31,646 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:31,647 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/nav 2009-06-30 17:33:31,647 DEBUG quick_setup running python command "method" 2009-06-30 17:33:31,647 DEBUG quick_subs reference_file: a_km.nav refabs_output: a_km.ref output: a_km.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-06-30 17:33:31,647 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-06-30 17:33:31,871 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:31,872 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/nav 2009-06-30 17:33:31,872 DEBUG quick_setup running python command "method" 2009-06-30 17:33:31,872 DEBUG call_matlab --> clear all 2009-06-30 17:33:31,885 DEBUG call_matlab <-- >> 2009-06-30 17:33:31,885 DEBUG call_matlab --> close all 2009-06-30 17:33:31,947 DEBUG call_matlab <-- >> 2009-06-30 17:33:31,947 DEBUG call_matlab --> cd /home/data/km0914/proc/os38bb/nav 2009-06-30 17:33:31,951 DEBUG call_matlab <-- >> 2009-06-30 17:33:31,951 DEBUG call_matlab --> refsm 2009-06-30 17:33:33,556 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_km opened Searching CODAS database ==> ../adcpdb/a_km for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 2236 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 90 percent done... 100 percent done... >> 2009-06-30 17:33:33,557 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-06-30 17:33:33,557 DEBUG quick_setup nav/putnav.tmp exists 2009-06-30 17:33:33,557 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:33,557 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/nav 2009-06-30 17:33:33,558 DEBUG quick_setup running python command "method" 2009-06-30 17:33:33,558 DEBUG quick_subs dbname: ../adcpdb/a_km position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-06-30 17:33:33,558 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-06-30 17:33:33,659 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-06-30 17:33:33,660 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:33,660 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/nav 2009-06-30 17:33:33,660 DEBUG quick_setup running python command "method" 2009-06-30 17:33:33,662 DEBUG quick_subs Created callrtmp.m 2009-06-30 17:33:33,662 DEBUG call_matlab --> clear all 2009-06-30 17:33:33,673 DEBUG call_matlab <-- >> 2009-06-30 17:33:33,674 DEBUG call_matlab --> close all 2009-06-30 17:33:33,760 DEBUG call_matlab <-- >> 2009-06-30 17:33:33,760 DEBUG call_matlab --> cd /home/data/km0914/proc/os38bb/nav 2009-06-30 17:33:33,764 DEBUG call_matlab <-- >> 2009-06-30 17:33:33,764 DEBUG call_matlab --> callrtmp_tmp 2009-06-30 17:33:35,938 DEBUG call_matlab <-- cruise = km0914 cruise = km0914 cruise = km0914 cruise = km0914 cruise = km0914 >> 2009-06-30 17:33:35,938 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2009-06-30 17:33:35,939 DEBUG quick_setup edit/lst_temp.tmp exists 2009-06-30 17:33:35,939 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:35,939 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/edit 2009-06-30 17:33:35,939 DEBUG quick_setup running python command "method" 2009-06-30 17:33:35,939 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km.tem step_size= 1 year_base= 2009 time_ranges: all 2009-06-30 17:33:35,940 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2009-06-30 17:33:35,973 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:35,973 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/edit 2009-06-30 17:33:35,973 DEBUG quick_setup running python command "method" 2009-06-30 17:33:36,971 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2009-06-30 17:33:36,972 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2009-06-30 17:33:36,972 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:36,972 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/cal/botmtrk 2009-06-30 17:33:36,972 DEBUG quick_setup running python command "method" 2009-06-30 17:33:36,973 DEBUG quick_subs dbname: ../../adcpdb/a_km output: a_km.btm step_size= 1 year_base= 2009 time_ranges: 2009/06/22 18:38:32 to 2009/06/30 17:32:21 /* whole time range */ 2009-06-30 17:33:36,973 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2009-06-30 17:33:36,986 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2009-06-30 17:33:36,986 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:36,986 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/cal/botmtrk 2009-06-30 17:33:36,987 DEBUG quick_setup running python command "method" 2009-06-30 17:33:36,987 DEBUG quick_subs fix_file_type: simple reference_file: a_km.btm fix_file: ../../nav/a_km.gps output: a_km.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 60 2009-06-30 17:33:36,987 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2009-06-30 17:33:36,991 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:36,992 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/cal/botmtrk 2009-06-30 17:33:36,992 DEBUG quick_setup running python command "method" 2009-06-30 17:33:36,992 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') [a, ph, gd_mask, d] = ... btcaluv('a_km.ref','a_km.btm',... 'ADCP km0914 step size 1 ', 1); 2009-06-30 17:33:37,204 DEBUG quick_setup nav/as_nav.tmp exists 2009-06-30 17:33:37,204 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:37,204 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/nav 2009-06-30 17:33:37,204 DEBUG quick_setup running python command "method" 2009-06-30 17:33:37,205 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/06/22 18:38:32 to 2009/06/30 17:32:21 /* the whole time range */ 2009-06-30 17:33:37,205 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-06-30 17:33:37,294 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2009-06-30 17:33:37,294 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:37,295 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/cal/watertrk 2009-06-30 17:33:37,295 DEBUG quick_setup running python command "method" 2009-06-30 17:33:37,295 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_km.gps reference_file: ../../nav/a_km.nav output_file: a_km_7.cal year_base= 2009 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2009-06-30 17:33:37,296 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2009-06-30 17:33:37,328 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:37,328 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/cal/watertrk 2009-06-30 17:33:37,329 DEBUG quick_setup running python command "method" 2009-06-30 17:33:37,329 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') adcpcal('a_km_7.cal', 'ADCP km0914 7ens') 2009-06-30 17:33:37,329 DEBUG call_matlab --> clear all 2009-06-30 17:33:37,337 DEBUG call_matlab <-- >> 2009-06-30 17:33:37,337 DEBUG call_matlab --> close all 2009-06-30 17:33:37,423 DEBUG call_matlab <-- >> 2009-06-30 17:33:37,424 DEBUG call_matlab --> cd /home/data/km0914/proc/os38bb/cal/watertrk 2009-06-30 17:33:37,427 DEBUG call_matlab <-- >> 2009-06-30 17:33:37,428 DEBUG call_matlab --> calladcpcal_tmp 2009-06-30 17:33:39,120 DEBUG call_matlab <-- figure saved as cal1.ps figure saved as cal2.ps ans = 40 ans = j_ph: 11 j_amp: 10 j_t: 2 j_du: 5 j_dv: 6 j_dt: 9 j_mvar: 8 j_var: 7 calr: [24x11 double] igood: [23x1 double] >> 2009-06-30 17:33:39,121 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2009-06-30 17:33:39,121 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:39,121 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/vector 2009-06-30 17:33:39,122 DEBUG quick_setup running python command "method" 2009-06-30 17:33:39,122 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_km.tmp 2009-06-30 17:33:39,130 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:39,130 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/vector 2009-06-30 17:33:39,131 DEBUG quick_setup running python command "method" 2009-06-30 17:33:39,131 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2009-06-30 17:33:39,263 DEBUG quick_asect done making vector matfiles 2009-06-30 17:33:39,263 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:39,264 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/contour 2009-06-30 17:33:39,264 DEBUG quick_setup running python command "method" 2009-06-30 17:33:39,264 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_km.tmp 2009-06-30 17:33:39,274 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:39,275 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/contour 2009-06-30 17:33:39,275 DEBUG quick_setup running python command "method" 2009-06-30 17:33:39,276 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2009-06-30 17:33:39,499 DEBUG quick_setup starting in /home/data/km0914/proc/os38bb 2009-06-30 17:33:39,499 DEBUG quick_setup executing commands from /home/data/km0914/proc/os38bb/contour 2009-06-30 17:33:39,500 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_km 2009-06-30 17:33:39,956 DEBUG quick_asect done running getmat with "allbins" 2009-06-30 17:33:39,957 INFO root copying NOFIG to /home/adcp/www/figures/os38bb_hcorr_plot.png 2009-06-30 17:33:39,958 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os38bb_hcorr_plot_thumb.png 2009-06-30 17:33:39,958 DEBUG root matfile is contour/contour_uv.mat 2009-06-30 17:33:39,967 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os38bb_cont_uv.mat 2009-06-30 17:33:39,967 DEBUG root matfile is vector/vector_uv.mat 2009-06-30 17:33:39,968 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os38bb_vect_uv.mat 2009-06-30 17:33:39,968 DEBUG root matfile is contour/contour_xy.mat 2009-06-30 17:33:39,969 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os38bb_cont_xy.mat 2009-06-30 17:33:39,969 DEBUG root matfile is vector/vector_xy.mat 2009-06-30 17:33:39,970 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os38bb_vect_xy.mat 2009-06-30 17:33:39,970 DEBUG root about to copy file edit/a_km.tem to /home/adcp/www/data/os38bb_temp.asc 2009-06-30 17:33:39,971 INFO root copying edit/a_km.tem to /home/adcp/www/data/os38bb_temp.asc 2009-06-30 17:33:39,972 INFO root Ending quick_adcp.py 2009-06-30 17:33:40,074 DEBUG quick_setup killed matlab engine