2009-02-12 18:10:44,883 DEBUG root about to write control file parameters to --yearbase 2009 --pingtype bb --cfgbase km0905 --cruisename km0905 --instclass wh --instname wh300 --dbname a_km --datatype uhdas --datadir /home/data/km0905/raw/wh300 --cfgpath /home/data/km0905/proc/wh300/config --ens_len 120 --ping_headcorr --hcorr_inst posmv --use_topo4edit ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --acc_heading_cutoff 0.018000 2009-02-12 18:10:44,886 DEBUG quick_adcp progdir = /home/currents/programs 2009-02-12 18:10:44,886 DEBUG quick_adcp binos = lnx 2009-02-12 18:10:44,886 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2009-02-12 18:10:44,886 DEBUG quick_setup yearbase is 2009, proc_yearbase is 2009 2009-02-12 18:10:44,887 DEBUG quick_setup processing data logged with uhdas: 2009-02-12 18:10:44,887 DEBUG quick_setup datatype is uhdas 2009-02-12 18:10:44,887 DEBUG quick_setup pingtype is bb 2009-02-12 18:10:44,887 DEBUG quick_setup instclass is wh 2009-02-12 18:10:44,887 DEBUG quick_setup no post-processing heading correction will be used 2009-02-12 18:10:44,887 DEBUG quick_setup transducer depth set in *_cfg.m file 2009-02-12 18:10:44,888 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = wh; instname = 'wh300'; pingtype = 'bb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'km0905',... 'cfgpath' , '/home/data/km0905/proc/wh300/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2009-02-12 18:10:44,888 DEBUG quick_setup ------- starting Matlab engine ------- 2009-02-12 18:10:44,888 DEBUG quick_setup ['/home/currents/programs/matlab'] 2009-02-12 18:10:44,890 DEBUG call_matlab starting to wait for initial prompt 2009-02-12 18:10:45,795 DEBUG call_matlab received initial prompt 2009-02-12 18:10:46,005 DEBUG quick_adcp cwd is /home/data/km0905/proc/wh300 about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-02-12 18:10:46,006 DEBUG quick_adcp original fix file is a_km.gps 2009-02-12 18:10:46,006 DEBUG quick_adcp smoothed nav file is refsm.sm 2009-02-12 18:10:46,007 DEBUG quick_asect extracting matlab files for wh300, bb pings 2009-02-12 18:10:46,131 DEBUG quick_subs found 61 files using wildcard expansion from "/home/data/km0905/raw/wh300/*.raw" 2009-02-12 18:10:46,132 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/km0905/raw/wh300/km2009_037_70775.raw /home/data/km0905/raw/wh300/km2009_037_72000.raw /home/data/km0905/raw/wh300/km2009_037_79200.raw /home/data/km0905/raw/wh300/km2009_038_00000.raw /home/data/km0905/raw/wh300/km2009_038_07200.raw /home/data/km0905/raw/wh300/km2009_038_14400.raw /home/data/km0905/raw/wh300/km2009_038_21600.raw /home/data/km0905/raw/wh300/km2009_038_28800.raw /home/data/km0905/raw/wh300/km2009_038_36000.raw /home/data/km0905/raw/wh300/km2009_038_43200.raw /home/data/km0905/raw/wh300/km2009_038_50400.raw /home/data/km0905/raw/wh300/km2009_038_57600.raw /home/data/km0905/raw/wh300/km2009_038_64800.raw /home/data/km0905/raw/wh300/km2009_038_72000.raw /home/data/km0905/raw/wh300/km2009_038_79200.raw /home/data/km0905/raw/wh300/km2009_039_00000.raw /home/data/km0905/raw/wh300/km2009_039_07200.raw /home/data/km0905/raw/wh300/km2009_039_14400.raw /home/data/km0905/raw/wh300/km2009_039_21600.raw /home/data/km0905/raw/wh300/km2009_039_28800.raw /home/data/km0905/raw/wh300/km2009_039_36000.raw /home/data/km0905/raw/wh300/km2009_039_43200.raw /home/data/km0905/raw/wh300/km2009_039_50400.raw /home/data/km0905/raw/wh300/km2009_039_57600.raw /home/data/km0905/raw/wh300/km2009_039_64800.raw /home/data/km0905/raw/wh300/km2009_039_72000.raw /home/data/km0905/raw/wh300/km2009_039_79200.raw /home/data/km0905/raw/wh300/km2009_040_00000.raw /home/data/km0905/raw/wh300/km2009_040_07200.raw /home/data/km0905/raw/wh300/km2009_040_14400.raw /home/data/km0905/raw/wh300/km2009_040_21600.raw /home/data/km0905/raw/wh300/km2009_040_28800.raw /home/data/km0905/raw/wh300/km2009_040_36000.raw /home/data/km0905/raw/wh300/km2009_040_43200.raw /home/data/km0905/raw/wh300/km2009_040_50400.raw /home/data/km0905/raw/wh300/km2009_040_57600.raw /home/data/km0905/raw/wh300/km2009_040_64800.raw /home/data/km0905/raw/wh300/km2009_040_72000.raw /home/data/km0905/raw/wh300/km2009_040_79200.raw /home/data/km0905/raw/wh300/km2009_041_00000.raw /home/data/km0905/raw/wh300/km2009_041_07200.raw /home/data/km0905/raw/wh300/km2009_041_14400.raw /home/data/km0905/raw/wh300/km2009_041_21600.raw /home/data/km0905/raw/wh300/km2009_041_28800.raw /home/data/km0905/raw/wh300/km2009_041_36000.raw /home/data/km0905/raw/wh300/km2009_041_43200.raw /home/data/km0905/raw/wh300/km2009_041_50400.raw /home/data/km0905/raw/wh300/km2009_041_57600.raw /home/data/km0905/raw/wh300/km2009_041_64800.raw /home/data/km0905/raw/wh300/km2009_041_72000.raw /home/data/km0905/raw/wh300/km2009_041_79200.raw /home/data/km0905/raw/wh300/km2009_042_00000.raw /home/data/km0905/raw/wh300/km2009_042_07200.raw /home/data/km0905/raw/wh300/km2009_042_14400.raw /home/data/km0905/raw/wh300/km2009_042_21600.raw /home/data/km0905/raw/wh300/km2009_042_28800.raw /home/data/km0905/raw/wh300/km2009_042_36000.raw /home/data/km0905/raw/wh300/km2009_042_43200.raw /home/data/km0905/raw/wh300/km2009_042_50400.raw /home/data/km0905/raw/wh300/km2009_042_57600.raw /home/data/km0905/raw/wh300/km2009_042_64800.raw 2009-02-12 18:10:46,132 DEBUG quick_adcp LASTFILES invoked. using only 61 files from end of filelist 2009-02-12 18:10:46,132 DEBUG quick_adcp using delblks = 1 2009-02-12 18:10:46,132 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/km0905/raw/wh300/km2009_037_70775.raw /home/data/km0905/raw/wh300/km2009_037_72000.raw /home/data/km0905/raw/wh300/km2009_037_79200.raw /home/data/km0905/raw/wh300/km2009_038_00000.raw /home/data/km0905/raw/wh300/km2009_038_07200.raw /home/data/km0905/raw/wh300/km2009_038_14400.raw /home/data/km0905/raw/wh300/km2009_038_21600.raw /home/data/km0905/raw/wh300/km2009_038_28800.raw /home/data/km0905/raw/wh300/km2009_038_36000.raw /home/data/km0905/raw/wh300/km2009_038_43200.raw /home/data/km0905/raw/wh300/km2009_038_50400.raw /home/data/km0905/raw/wh300/km2009_038_57600.raw /home/data/km0905/raw/wh300/km2009_038_64800.raw /home/data/km0905/raw/wh300/km2009_038_72000.raw /home/data/km0905/raw/wh300/km2009_038_79200.raw /home/data/km0905/raw/wh300/km2009_039_00000.raw /home/data/km0905/raw/wh300/km2009_039_07200.raw /home/data/km0905/raw/wh300/km2009_039_14400.raw /home/data/km0905/raw/wh300/km2009_039_21600.raw /home/data/km0905/raw/wh300/km2009_039_28800.raw /home/data/km0905/raw/wh300/km2009_039_36000.raw /home/data/km0905/raw/wh300/km2009_039_43200.raw /home/data/km0905/raw/wh300/km2009_039_50400.raw /home/data/km0905/raw/wh300/km2009_039_57600.raw /home/data/km0905/raw/wh300/km2009_039_64800.raw /home/data/km0905/raw/wh300/km2009_039_72000.raw /home/data/km0905/raw/wh300/km2009_039_79200.raw /home/data/km0905/raw/wh300/km2009_040_00000.raw /home/data/km0905/raw/wh300/km2009_040_07200.raw /home/data/km0905/raw/wh300/km2009_040_14400.raw /home/data/km0905/raw/wh300/km2009_040_21600.raw /home/data/km0905/raw/wh300/km2009_040_28800.raw /home/data/km0905/raw/wh300/km2009_040_36000.raw /home/data/km0905/raw/wh300/km2009_040_43200.raw /home/data/km0905/raw/wh300/km2009_040_50400.raw /home/data/km0905/raw/wh300/km2009_040_57600.raw /home/data/km0905/raw/wh300/km2009_040_64800.raw /home/data/km0905/raw/wh300/km2009_040_72000.raw /home/data/km0905/raw/wh300/km2009_040_79200.raw /home/data/km0905/raw/wh300/km2009_041_00000.raw /home/data/km0905/raw/wh300/km2009_041_07200.raw /home/data/km0905/raw/wh300/km2009_041_14400.raw /home/data/km0905/raw/wh300/km2009_041_21600.raw /home/data/km0905/raw/wh300/km2009_041_28800.raw /home/data/km0905/raw/wh300/km2009_041_36000.raw /home/data/km0905/raw/wh300/km2009_041_43200.raw /home/data/km0905/raw/wh300/km2009_041_50400.raw /home/data/km0905/raw/wh300/km2009_041_57600.raw /home/data/km0905/raw/wh300/km2009_041_64800.raw /home/data/km0905/raw/wh300/km2009_041_72000.raw /home/data/km0905/raw/wh300/km2009_041_79200.raw /home/data/km0905/raw/wh300/km2009_042_00000.raw /home/data/km0905/raw/wh300/km2009_042_07200.raw /home/data/km0905/raw/wh300/km2009_042_14400.raw /home/data/km0905/raw/wh300/km2009_042_21600.raw /home/data/km0905/raw/wh300/km2009_042_28800.raw /home/data/km0905/raw/wh300/km2009_042_36000.raw /home/data/km0905/raw/wh300/km2009_042_43200.raw /home/data/km0905/raw/wh300/km2009_042_50400.raw /home/data/km0905/raw/wh300/km2009_042_57600.raw /home/data/km0905/raw/wh300/km2009_042_64800.raw 2009-02-12 18:10:46,134 DEBUG quick_adcp Thu Feb 12 18:10:46 2009 running quick_adcp.py as follows: --cntfile /home/data/km0905/proc/wh300/wh300_qpy.cnt ----- adcpsect variables ------ afilebase a_km cbasename contour dbname a_km dbpath ../adcpdb deeper_boundaries [30, 50, 70, 90, 110, 130, 150] firstdepth 15 gridnum 40 increment 4 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2009 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.018 adjust_time 1 afilebase a_km allow_reload True auto True bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase km0905 cfgpath /home/data/km0905/proc/wh300/config cntfile /home/data/km0905/proc/wh300/wh300_qpy.cnt commands None cruisename km0905 data_def vmadcp.def datadir /home/data/km0905/raw/wh300 datafile_glob *.raw datatype uhdas dbname a_km dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 120 ensgyrorbin False expert None filelist ['/home/data/km0905/raw/wh300/km2009_037_70775.raw', '/home/data/km0905/raw/wh300/km2009_037_72000.raw', '/home/data/km0905/raw/wh300/km2009_037_79200.raw', '/home/data/km0905/raw/wh300/km2009_038_00000.raw', '/home/data/km0905/raw/wh300/km2009_038_07200.raw', '/home/data/km0905/raw/wh300/km2009_038_14400.raw', '/home/data/km0905/raw/wh300/km2009_038_21600.raw', '/home/data/km0905/raw/wh300/km2009_038_28800.raw', '/home/data/km0905/raw/wh300/km2009_038_36000.raw', '/home/data/km0905/raw/wh300/km2009_038_43200.raw', '/home/data/km0905/raw/wh300/km2009_038_50400.raw', '/home/data/km0905/raw/wh300/km2009_038_57600.raw', '/home/data/km0905/raw/wh300/km2009_038_64800.raw', '/home/data/km0905/raw/wh300/km2009_038_72000.raw', '/home/data/km0905/raw/wh300/km2009_038_79200.raw', '/home/data/km0905/raw/wh300/km2009_039_00000.raw', '/home/data/km0905/raw/wh300/km2009_039_07200.raw', '/home/data/km0905/raw/wh300/km2009_039_14400.raw', '/home/data/km0905/raw/wh300/km2009_039_21600.raw', '/home/data/km0905/raw/wh300/km2009_039_28800.raw', '/home/data/km0905/raw/wh300/km2009_039_36000.raw', '/home/data/km0905/raw/wh300/km2009_039_43200.raw', '/home/data/km0905/raw/wh300/km2009_039_50400.raw', '/home/data/km0905/raw/wh300/km2009_039_57600.raw', '/home/data/km0905/raw/wh300/km2009_039_64800.raw', '/home/data/km0905/raw/wh300/km2009_039_72000.raw', '/home/data/km0905/raw/wh300/km2009_039_79200.raw', '/home/data/km0905/raw/wh300/km2009_040_00000.raw', '/home/data/km0905/raw/wh300/km2009_040_07200.raw', '/home/data/km0905/raw/wh300/km2009_040_14400.raw', '/home/data/km0905/raw/wh300/km2009_040_21600.raw', '/home/data/km0905/raw/wh300/km2009_040_28800.raw', '/home/data/km0905/raw/wh300/km2009_040_36000.raw', '/home/data/km0905/raw/wh300/km2009_040_43200.raw', '/home/data/km0905/raw/wh300/km2009_040_50400.raw', '/home/data/km0905/raw/wh300/km2009_040_57600.raw', '/home/data/km0905/raw/wh300/km2009_040_64800.raw', '/home/data/km0905/raw/wh300/km2009_040_72000.raw', '/home/data/km0905/raw/wh300/km2009_040_79200.raw', '/home/data/km0905/raw/wh300/km2009_041_00000.raw', '/home/data/km0905/raw/wh300/km2009_041_07200.raw', '/home/data/km0905/raw/wh300/km2009_041_14400.raw', '/home/data/km0905/raw/wh300/km2009_041_21600.raw', '/home/data/km0905/raw/wh300/km2009_041_28800.raw', '/home/data/km0905/raw/wh300/km2009_041_36000.raw', '/home/data/km0905/raw/wh300/km2009_041_43200.raw', '/home/data/km0905/raw/wh300/km2009_041_50400.raw', '/home/data/km0905/raw/wh300/km2009_041_57600.raw', '/home/data/km0905/raw/wh300/km2009_041_64800.raw', '/home/data/km0905/raw/wh300/km2009_041_72000.raw', '/home/data/km0905/raw/wh300/km2009_041_79200.raw', '/home/data/km0905/raw/wh300/km2009_042_00000.raw', '/home/data/km0905/raw/wh300/km2009_042_07200.raw', '/home/data/km0905/raw/wh300/km2009_042_14400.raw', '/home/data/km0905/raw/wh300/km2009_042_21600.raw', '/home/data/km0905/raw/wh300/km2009_042_28800.raw', '/home/data/km0905/raw/wh300/km2009_042_36000.raw', '/home/data/km0905/raw/wh300/km2009_042_43200.raw', '/home/data/km0905/raw/wh300/km2009_042_50400.raw', '/home/data/km0905/raw/wh300/km2009_042_57600.raw', '/home/data/km0905/raw/wh300/km2009_042_64800.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 15 fixfile a_km.gps hcorr_inst posmv head_func None help False hidedisplay True howto_lta False howto_ping False instclass wh instname wh300 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = wh; instname = 'wh300'; pingtype = 'bb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'km0905',... 'cfgpath' , '/home/data/km0905/proc/wh300/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_km.gps overview False pgmin 50 ping_headcorr True pingtype bb post_headcorr False proc_yearbase 2009 procdir wh300 progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/km0905/raw/wh300/km2009_037_70775.raw', '/home/data/km0905/raw/wh300/km2009_037_72000.raw', '/home/data/km0905/raw/wh300/km2009_037_79200.raw', '/home/data/km0905/raw/wh300/km2009_038_00000.raw', '/home/data/km0905/raw/wh300/km2009_038_07200.raw', '/home/data/km0905/raw/wh300/km2009_038_14400.raw', '/home/data/km0905/raw/wh300/km2009_038_21600.raw', '/home/data/km0905/raw/wh300/km2009_038_28800.raw', '/home/data/km0905/raw/wh300/km2009_038_36000.raw', '/home/data/km0905/raw/wh300/km2009_038_43200.raw', '/home/data/km0905/raw/wh300/km2009_038_50400.raw', '/home/data/km0905/raw/wh300/km2009_038_57600.raw', '/home/data/km0905/raw/wh300/km2009_038_64800.raw', '/home/data/km0905/raw/wh300/km2009_038_72000.raw', '/home/data/km0905/raw/wh300/km2009_038_79200.raw', '/home/data/km0905/raw/wh300/km2009_039_00000.raw', '/home/data/km0905/raw/wh300/km2009_039_07200.raw', '/home/data/km0905/raw/wh300/km2009_039_14400.raw', '/home/data/km0905/raw/wh300/km2009_039_21600.raw', '/home/data/km0905/raw/wh300/km2009_039_28800.raw', '/home/data/km0905/raw/wh300/km2009_039_36000.raw', '/home/data/km0905/raw/wh300/km2009_039_43200.raw', '/home/data/km0905/raw/wh300/km2009_039_50400.raw', '/home/data/km0905/raw/wh300/km2009_039_57600.raw', '/home/data/km0905/raw/wh300/km2009_039_64800.raw', '/home/data/km0905/raw/wh300/km2009_039_72000.raw', '/home/data/km0905/raw/wh300/km2009_039_79200.raw', '/home/data/km0905/raw/wh300/km2009_040_00000.raw', '/home/data/km0905/raw/wh300/km2009_040_07200.raw', '/home/data/km0905/raw/wh300/km2009_040_14400.raw', '/home/data/km0905/raw/wh300/km2009_040_21600.raw', '/home/data/km0905/raw/wh300/km2009_040_28800.raw', '/home/data/km0905/raw/wh300/km2009_040_36000.raw', '/home/data/km0905/raw/wh300/km2009_040_43200.raw', '/home/data/km0905/raw/wh300/km2009_040_50400.raw', '/home/data/km0905/raw/wh300/km2009_040_57600.raw', '/home/data/km0905/raw/wh300/km2009_040_64800.raw', '/home/data/km0905/raw/wh300/km2009_040_72000.raw', '/home/data/km0905/raw/wh300/km2009_040_79200.raw', '/home/data/km0905/raw/wh300/km2009_041_00000.raw', '/home/data/km0905/raw/wh300/km2009_041_07200.raw', '/home/data/km0905/raw/wh300/km2009_041_14400.raw', '/home/data/km0905/raw/wh300/km2009_041_21600.raw', '/home/data/km0905/raw/wh300/km2009_041_28800.raw', '/home/data/km0905/raw/wh300/km2009_041_36000.raw', '/home/data/km0905/raw/wh300/km2009_041_43200.raw', '/home/data/km0905/raw/wh300/km2009_041_50400.raw', '/home/data/km0905/raw/wh300/km2009_041_57600.raw', '/home/data/km0905/raw/wh300/km2009_041_64800.raw', '/home/data/km0905/raw/wh300/km2009_041_72000.raw', '/home/data/km0905/raw/wh300/km2009_041_79200.raw', '/home/data/km0905/raw/wh300/km2009_042_00000.raw', '/home/data/km0905/raw/wh300/km2009_042_07200.raw', '/home/data/km0905/raw/wh300/km2009_042_14400.raw', '/home/data/km0905/raw/wh300/km2009_042_21600.raw', '/home/data/km0905/raw/wh300/km2009_042_28800.raw', '/home/data/km0905/raw/wh300/km2009_042_36000.raw', '/home/data/km0905/raw/wh300/km2009_042_43200.raw', '/home/data/km0905/raw/wh300/km2009_042_50400.raw', '/home/data/km0905/raw/wh300/km2009_042_57600.raw', '/home/data/km0905/raw/wh300/km2009_042_64800.raw'] setup_info False skip_avg True smfile refsm.sm steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_matplotlib False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2009 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-02-12 18:10:46,134 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2009-02-12 18:10:46,134 DEBUG quick_run scanning files for time ranges... 2009-02-12 18:10:46,135 DEBUG quick_setup starting in /home/data/km0905/proc/wh300/scan 2009-02-12 18:10:46,135 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/scan 2009-02-12 18:10:46,135 DEBUG quick_setup running python command "method" 2009-02-12 18:10:46,135 DEBUG call_matlab --> clear all 2009-02-12 18:10:46,140 DEBUG call_matlab <-- >> 2009-02-12 18:10:46,140 DEBUG call_matlab --> close all 2009-02-12 18:10:46,202 DEBUG call_matlab <-- >> 2009-02-12 18:10:46,203 DEBUG call_matlab --> cd /home/data/km0905/proc/wh300/scan 2009-02-12 18:10:46,205 DEBUG call_matlab <-- >> 2009-02-12 18:10:46,205 DEBUG call_matlab --> scan_tmp 2009-02-12 18:10:47,049 DEBUG call_matlab <-- getting config files from "/home/data/km0905/proc/wh300/config" running "km0905_cfg.m" running "km0905_proc.m" writing scan info to a_km.scn >> 2009-02-12 18:10:47,049 DEBUG quick_run writing time range from a_km.scn to a_km.tr 2009-02-12 18:10:47,049 DEBUG quick_run getting scan time range 2009-02-12 18:10:47,050 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:47,050 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/scan 2009-02-12 18:10:47,050 DEBUG quick_setup running python command "method" 2009-02-12 18:10:47,050 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:47,051 DEBUG quick_subs extracting time range 2009-02-12 18:10:47,053 DEBUG quick_subs start_end_time 2009/02/07 19:39:36 to 2009/02/12 18:10:37 2009-02-12 18:10:47,053 DEBUG quick_subs dd0: 37.819167 dd1: 42.757373 2009-02-12 18:10:47,053 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/km0905/proc/wh300 2009-02-12 18:10:47,053 DEBUG quick_adcp looking for database with adcpdb/a_km*.blk 2009-02-12 18:10:47,054 DEBUG quick_adcp database found: listing blocks 2009-02-12 18:10:47,055 DEBUG quick_subs removing a_kmdir.blk 2009-02-12 18:10:47,055 DEBUG quick_subs about to run mkblkdir 2009-02-12 18:10:47,055 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-02-12 18:10:47,056 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-02-12 18:10:47,066 DEBUG quick_subs database passes. 2009-02-12 18:10:47,067 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-12 18:10:47,067 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:47,067 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/adcpdb 2009-02-12 18:10:47,068 DEBUG quick_setup running python command "method" 2009-02-12 18:10:47,068 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:47,068 DEBUG quick_subs extracting time range 2009-02-12 18:10:47,069 DEBUG quick_subs start_end_time 2009/02/07 19:41:37 to 2009/02/12 17:40:17 2009-02-12 18:10:47,069 DEBUG quick_subs dd0: 37.820567 dd1: 42.736308 2009-02-12 18:10:47,069 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-12 18:10:47,069 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:47,070 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/adcpdb 2009-02-12 18:10:47,070 DEBUG quick_setup running python command "method" 2009-02-12 18:10:47,070 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:47,071 DEBUG quick_subs extracting time range 2009-02-12 18:10:47,071 DEBUG quick_subs start_end_time 2009/02/07 19:41:37 to 2009/02/12 17:40:17 2009-02-12 18:10:47,071 DEBUG quick_subs dd0: 37.820567 dd1: 42.736308 2009-02-12 18:10:47,072 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2009-02-12 18:10:47,072 DEBUG quick_adcp origdb_time_range is 2009/02/07 19:41:37 to 2009/02/12 17:40:17 2009-02-12 18:10:47,072 DEBUG quick_adcp (37.820567 to 42.736308) 2009-02-12 18:10:47,073 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2009-02-12 18:10:47,073 DEBUG quick_subs getting current (remaining after deletion) database times 2009-02-12 18:10:47,073 DEBUG quick_subs ['adcpdb/a_kmdir.blk', 'adcpdb/a_km017.blk', 'adcpdb/a_km021.blk', 'adcpdb/a_km018.blk', 'adcpdb/a_km003.blk', 'adcpdb/a_km001.blk', 'adcpdb/a_km025.blk', 'adcpdb/a_km019.blk', 'adcpdb/a_km011.blk', 'adcpdb/a_km007.blk', 'adcpdb/a_km009.blk', 'adcpdb/a_km024.blk', 'adcpdb/a_km012.blk', 'adcpdb/a_km008.blk', 'adcpdb/a_km006.blk', 'adcpdb/a_km004.blk', 'adcpdb/a_km020.blk', 'adcpdb/a_km022.blk', 'adcpdb/a_km002.blk', 'adcpdb/a_km010.blk', 'adcpdb/a_km005.blk', 'adcpdb/a_km013.blk', 'adcpdb/a_km016.blk', 'adcpdb/a_km023.blk', 'adcpdb/a_km014.blk', 'adcpdb/a_km015.blk'] 2009-02-12 18:10:47,073 DEBUG quick_subs length is 26 2009-02-12 18:10:47,074 DEBUG quick_subs removing a_kmdir.blk 2009-02-12 18:10:47,074 DEBUG quick_subs about to run mkblkdir 2009-02-12 18:10:47,074 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-02-12 18:10:47,075 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-02-12 18:10:47,085 DEBUG quick_subs database passes. 2009-02-12 18:10:47,086 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-12 18:10:47,086 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:47,086 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/adcpdb 2009-02-12 18:10:47,086 DEBUG quick_setup running python command "method" 2009-02-12 18:10:47,087 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:47,087 DEBUG quick_subs extracting time range 2009-02-12 18:10:47,088 DEBUG quick_subs start_end_time 2009/02/07 19:41:37 to 2009/02/12 17:40:17 2009-02-12 18:10:47,088 DEBUG quick_subs dd0: 37.820567 dd1: 42.736308 2009-02-12 18:10:47,088 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:47,088 DEBUG quick_subs reading time range 2009-02-12 18:10:47,089 DEBUG quick_subs start_end_time 2009/02/07 19:41:37 to 2009/02/12 17:40:17 2009-02-12 18:10:47,089 DEBUG quick_subs dd0: 37.820567 dd1: 42.736308 2009-02-12 18:10:47,089 INFO quick_subs Thu Feb 12 18:10:47 2009 2009-02-12 18:10:47,090 INFO quick_subs checking database time range by listblk 2009-02-12 18:10:47,090 DEBUG quick_subs removing a_kmdir.blk 2009-02-12 18:10:47,090 DEBUG quick_subs about to run mkblkdir 2009-02-12 18:10:47,090 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-02-12 18:10:47,091 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-02-12 18:10:47,101 DEBUG quick_subs database passes. 2009-02-12 18:10:47,102 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-12 18:10:47,102 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:47,102 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/adcpdb 2009-02-12 18:10:47,102 DEBUG quick_setup running python command "method" 2009-02-12 18:10:47,102 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:47,103 DEBUG quick_subs extracting time range 2009-02-12 18:10:47,103 DEBUG quick_subs start_end_time 2009/02/07 19:41:37 to 2009/02/12 17:40:17 2009-02-12 18:10:47,104 DEBUG quick_subs dd0: 37.820567 dd1: 42.736308 2009-02-12 18:10:47,106 INFO quick_subs found line /* 0 n= 146 a_km001.blk */ 2009/02/07 19:41:37 to 2009/02/08 00:31:58 2009-02-12 18:10:47,106 INFO quick_subs found line /* 1 n= 146 a_km002.blk */ 2009/02/08 00:33:58 to 2009/02/08 05:24:20 2009-02-12 18:10:47,106 INFO quick_subs found line /* 2 n= 146 a_km003.blk */ 2009/02/08 05:26:20 to 2009/02/08 10:16:41 2009-02-12 18:10:47,106 INFO quick_subs found line /* 3 n= 146 a_km004.blk */ 2009/02/08 10:18:41 to 2009/02/08 15:09:02 2009-02-12 18:10:47,106 INFO quick_subs found line /* 4 n= 146 a_km005.blk */ 2009/02/08 15:11:03 to 2009/02/08 20:01:24 2009-02-12 18:10:47,107 INFO quick_subs found line /* 5 n= 146 a_km006.blk */ 2009/02/08 20:03:24 to 2009/02/09 00:53:46 2009-02-12 18:10:47,107 INFO quick_subs found line /* 6 n= 146 a_km007.blk */ 2009/02/09 00:55:46 to 2009/02/09 05:48:08 2009-02-12 18:10:47,107 INFO quick_subs found line /* 7 n= 146 a_km008.blk */ 2009/02/09 05:50:08 to 2009/02/09 10:40:29 2009-02-12 18:10:47,107 INFO quick_subs found line /* 8 n= 146 a_km009.blk */ 2009/02/09 10:42:29 to 2009/02/09 15:32:50 2009-02-12 18:10:47,107 INFO quick_subs found line /* 9 n= 146 a_km010.blk */ 2009/02/09 15:34:51 to 2009/02/09 20:25:12 2009-02-12 18:10:47,108 INFO quick_subs found line /* 10 n= 146 a_km011.blk */ 2009/02/09 20:27:12 to 2009/02/10 01:17:33 2009-02-12 18:10:47,108 INFO quick_subs found line /* 11 n= 146 a_km012.blk */ 2009/02/10 01:19:33 to 2009/02/10 06:09:54 2009-02-12 18:10:47,108 INFO quick_subs found line /* 12 n= 146 a_km013.blk */ 2009/02/10 06:11:55 to 2009/02/10 11:02:16 2009-02-12 18:10:47,108 INFO quick_subs found line /* 13 n= 146 a_km014.blk */ 2009/02/10 11:04:16 to 2009/02/10 15:54:38 2009-02-12 18:10:47,109 INFO quick_subs found line /* 14 n= 146 a_km015.blk */ 2009/02/10 15:56:38 to 2009/02/10 20:47:00 2009-02-12 18:10:47,109 INFO quick_subs found line /* 15 n= 146 a_km016.blk */ 2009/02/10 20:49:00 to 2009/02/11 01:39:21 2009-02-12 18:10:47,109 INFO quick_subs found line /* 16 n= 146 a_km017.blk */ 2009/02/11 01:41:21 to 2009/02/11 06:31:42 2009-02-12 18:10:47,109 INFO quick_subs found line /* 17 n= 146 a_km018.blk */ 2009/02/11 06:33:43 to 2009/02/11 11:26:04 2009-02-12 18:10:47,109 INFO quick_subs found line /* 18 n= 146 a_km019.blk */ 2009/02/11 11:28:04 to 2009/02/11 16:18:25 2009-02-12 18:10:47,110 INFO quick_subs found line /* 19 n= 146 a_km020.blk */ 2009/02/11 16:20:25 to 2009/02/11 21:10:47 2009-02-12 18:10:47,110 INFO quick_subs found line /* 20 n= 146 a_km021.blk */ 2009/02/11 21:12:47 to 2009/02/12 02:03:08 2009-02-12 18:10:47,110 INFO quick_subs found line /* 21 n= 146 a_km022.blk */ 2009/02/12 02:05:08 to 2009/02/12 06:55:30 2009-02-12 18:10:47,110 INFO quick_subs found line /* 22 n= 146 a_km023.blk */ 2009/02/12 06:57:30 to 2009/02/12 11:47:52 2009-02-12 18:10:47,110 INFO quick_subs found line /* 23 n= 146 a_km024.blk */ 2009/02/12 11:49:52 to 2009/02/12 16:40:13 2009-02-12 18:10:47,111 INFO quick_subs found line /* 24 n= 30 a_km025.blk */ 2009/02/12 16:42:13 to 2009/02/12 17:40:17 2009-02-12 18:10:47,111 INFO quick_subs scan data start at 37.8191667 2009-02-12 18:10:47,111 INFO quick_subs scan time range: 2009/02/07 19:39:36 to 2009/02/12 18:10:37 2009-02-12 18:10:47,111 INFO quick_subs codasdb ends at 42.7363079 (2009/02/12 17:40:17) 2009-02-12 18:10:47,112 DEBUG quick_subs ... changed dirs, in /home/data/km0905/proc/wh300/adcpdb 2009-02-12 18:10:47,112 DEBUG quick_subs deleting these files: ['a_km025.blk'] 2009-02-12 18:10:47,113 DEBUG quick_subs getting current (remaining after deletion) database times 2009-02-12 18:10:47,113 DEBUG quick_subs ['adcpdb/a_km017.blk', 'adcpdb/a_km021.blk', 'adcpdb/a_km018.blk', 'adcpdb/a_km003.blk', 'adcpdb/a_km001.blk', 'adcpdb/a_km019.blk', 'adcpdb/a_km011.blk', 'adcpdb/a_km007.blk', 'adcpdb/a_km009.blk', 'adcpdb/a_km024.blk', 'adcpdb/a_km012.blk', 'adcpdb/a_km008.blk', 'adcpdb/a_km006.blk', 'adcpdb/a_km004.blk', 'adcpdb/a_km020.blk', 'adcpdb/a_km022.blk', 'adcpdb/a_km002.blk', 'adcpdb/a_km010.blk', 'adcpdb/a_km005.blk', 'adcpdb/a_km013.blk', 'adcpdb/a_km016.blk', 'adcpdb/a_km023.blk', 'adcpdb/a_km014.blk', 'adcpdb/a_km015.blk'] 2009-02-12 18:10:47,113 DEBUG quick_subs length is 24 2009-02-12 18:10:47,113 DEBUG quick_subs about to run mkblkdir 2009-02-12 18:10:47,114 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-02-12 18:10:47,114 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-02-12 18:10:47,127 DEBUG quick_subs database passes. 2009-02-12 18:10:47,127 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-12 18:10:47,128 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:47,128 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/adcpdb 2009-02-12 18:10:47,128 DEBUG quick_setup running python command "method" 2009-02-12 18:10:47,129 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:47,130 DEBUG quick_subs extracting time range 2009-02-12 18:10:47,130 DEBUG quick_subs start_end_time 2009/02/07 19:41:37 to 2009/02/12 16:40:13 2009-02-12 18:10:47,130 DEBUG quick_subs dd0: 37.820567 dd1: 42.694595 2009-02-12 18:10:47,131 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:47,131 DEBUG quick_subs reading time range 2009-02-12 18:10:47,131 DEBUG quick_subs start_end_time 2009/02/07 19:41:37 to 2009/02/12 16:40:13 2009-02-12 18:10:47,132 DEBUG quick_subs dd0: 37.820567 dd1: 42.694595 2009-02-12 18:10:47,132 DEBUG quick_subs codas database currently goes from 2009/02/07 19:41:37 to 2009/02/12 16:40:13 2009-02-12 18:10:47,132 DEBUG quick_subs (37.820567 to 42.694595) 2009-02-12 18:10:47,133 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009found existing adcpdb blocks: %s 010found existing adcpdb blocks: %s 011found existing adcpdb blocks: %s 012found existing adcpdb blocks: %s 013found existing adcpdb blocks: %s 014found existing adcpdb blocks: %s 015found existing adcpdb blocks: %s 016found existing adcpdb blocks: %s 017found existing adcpdb blocks: %s 018found existing adcpdb blocks: %s 019found existing adcpdb blocks: %s 020found existing adcpdb blocks: %s 021found existing adcpdb blocks: %s 022found existing adcpdb blocks: %s 023found existing adcpdb blocks: %s 024 2009-02-12 18:10:47,135 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 011 012 013 014 015 016 017 018 019 020 021 022 023 024 025 2009-02-12 18:10:47,135 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019', '020', '021', '022', '023', '024'] 2009-02-12 18:10:47,136 DEBUG quick_subs checked: unloaded blkstrs: ['025'] 2009-02-12 18:10:47,136 DEBUG quick_subs first unloaded file is load/ens_blk025.cmd 2009-02-12 18:10:47,137 DEBUG quick_subs data goes from 2009/02/12 16:42:13 to 2009/02/12 18:10:37 2009-02-12 18:10:47,137 DEBUG quick_subs (42.695984 to 42.757373) 2009-02-12 18:10:47,137 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/km0905/raw/wh300/km2009_037_70775.raw /home/data/km0905/raw/wh300/km2009_037_72000.raw /home/data/km0905/raw/wh300/km2009_037_79200.raw /home/data/km0905/raw/wh300/km2009_038_00000.raw /home/data/km0905/raw/wh300/km2009_038_07200.raw /home/data/km0905/raw/wh300/km2009_038_14400.raw /home/data/km0905/raw/wh300/km2009_038_21600.raw /home/data/km0905/raw/wh300/km2009_038_28800.raw /home/data/km0905/raw/wh300/km2009_038_36000.raw /home/data/km0905/raw/wh300/km2009_038_43200.raw /home/data/km0905/raw/wh300/km2009_038_50400.raw /home/data/km0905/raw/wh300/km2009_038_57600.raw /home/data/km0905/raw/wh300/km2009_038_64800.raw /home/data/km0905/raw/wh300/km2009_038_72000.raw /home/data/km0905/raw/wh300/km2009_038_79200.raw /home/data/km0905/raw/wh300/km2009_039_00000.raw /home/data/km0905/raw/wh300/km2009_039_07200.raw /home/data/km0905/raw/wh300/km2009_039_14400.raw /home/data/km0905/raw/wh300/km2009_039_21600.raw /home/data/km0905/raw/wh300/km2009_039_28800.raw /home/data/km0905/raw/wh300/km2009_039_36000.raw /home/data/km0905/raw/wh300/km2009_039_43200.raw /home/data/km0905/raw/wh300/km2009_039_50400.raw /home/data/km0905/raw/wh300/km2009_039_57600.raw /home/data/km0905/raw/wh300/km2009_039_64800.raw /home/data/km0905/raw/wh300/km2009_039_72000.raw /home/data/km0905/raw/wh300/km2009_039_79200.raw /home/data/km0905/raw/wh300/km2009_040_00000.raw /home/data/km0905/raw/wh300/km2009_040_07200.raw /home/data/km0905/raw/wh300/km2009_040_14400.raw /home/data/km0905/raw/wh300/km2009_040_21600.raw /home/data/km0905/raw/wh300/km2009_040_28800.raw /home/data/km0905/raw/wh300/km2009_040_36000.raw /home/data/km0905/raw/wh300/km2009_040_43200.raw /home/data/km0905/raw/wh300/km2009_040_50400.raw /home/data/km0905/raw/wh300/km2009_040_57600.raw /home/data/km0905/raw/wh300/km2009_040_64800.raw /home/data/km0905/raw/wh300/km2009_040_72000.raw /home/data/km0905/raw/wh300/km2009_040_79200.raw /home/data/km0905/raw/wh300/km2009_041_00000.raw /home/data/km0905/raw/wh300/km2009_041_07200.raw /home/data/km0905/raw/wh300/km2009_041_14400.raw /home/data/km0905/raw/wh300/km2009_041_21600.raw /home/data/km0905/raw/wh300/km2009_041_28800.raw /home/data/km0905/raw/wh300/km2009_041_36000.raw /home/data/km0905/raw/wh300/km2009_041_43200.raw /home/data/km0905/raw/wh300/km2009_041_50400.raw /home/data/km0905/raw/wh300/km2009_041_57600.raw /home/data/km0905/raw/wh300/km2009_041_64800.raw /home/data/km0905/raw/wh300/km2009_041_72000.raw /home/data/km0905/raw/wh300/km2009_041_79200.raw /home/data/km0905/raw/wh300/km2009_042_00000.raw /home/data/km0905/raw/wh300/km2009_042_07200.raw /home/data/km0905/raw/wh300/km2009_042_14400.raw /home/data/km0905/raw/wh300/km2009_042_21600.raw /home/data/km0905/raw/wh300/km2009_042_28800.raw /home/data/km0905/raw/wh300/km2009_042_36000.raw /home/data/km0905/raw/wh300/km2009_042_43200.raw /home/data/km0905/raw/wh300/km2009_042_50400.raw /home/data/km0905/raw/wh300/km2009_042_57600.raw /home/data/km0905/raw/wh300/km2009_042_64800.raw 2009-02-12 18:10:47,138 INFO quick_run Thu Feb 12 18:10:47 2009 2009-02-12 18:10:47,138 INFO quick_run about to load uhdas files 2009-02-12 18:10:47,138 INFO quick_run /home/data/km0905/raw/wh300/km2009_037_70775.raw /home/data/km0905/raw/wh300/km2009_037_72000.raw /home/data/km0905/raw/wh300/km2009_037_79200.raw /home/data/km0905/raw/wh300/km2009_038_00000.raw /home/data/km0905/raw/wh300/km2009_038_07200.raw /home/data/km0905/raw/wh300/km2009_038_14400.raw /home/data/km0905/raw/wh300/km2009_038_21600.raw /home/data/km0905/raw/wh300/km2009_038_28800.raw /home/data/km0905/raw/wh300/km2009_038_36000.raw /home/data/km0905/raw/wh300/km2009_038_43200.raw /home/data/km0905/raw/wh300/km2009_038_50400.raw /home/data/km0905/raw/wh300/km2009_038_57600.raw /home/data/km0905/raw/wh300/km2009_038_64800.raw /home/data/km0905/raw/wh300/km2009_038_72000.raw /home/data/km0905/raw/wh300/km2009_038_79200.raw /home/data/km0905/raw/wh300/km2009_039_00000.raw /home/data/km0905/raw/wh300/km2009_039_07200.raw /home/data/km0905/raw/wh300/km2009_039_14400.raw /home/data/km0905/raw/wh300/km2009_039_21600.raw /home/data/km0905/raw/wh300/km2009_039_28800.raw /home/data/km0905/raw/wh300/km2009_039_36000.raw /home/data/km0905/raw/wh300/km2009_039_43200.raw /home/data/km0905/raw/wh300/km2009_039_50400.raw /home/data/km0905/raw/wh300/km2009_039_57600.raw /home/data/km0905/raw/wh300/km2009_039_64800.raw /home/data/km0905/raw/wh300/km2009_039_72000.raw /home/data/km0905/raw/wh300/km2009_039_79200.raw /home/data/km0905/raw/wh300/km2009_040_00000.raw /home/data/km0905/raw/wh300/km2009_040_07200.raw /home/data/km0905/raw/wh300/km2009_040_14400.raw /home/data/km0905/raw/wh300/km2009_040_21600.raw /home/data/km0905/raw/wh300/km2009_040_28800.raw /home/data/km0905/raw/wh300/km2009_040_36000.raw /home/data/km0905/raw/wh300/km2009_040_43200.raw /home/data/km0905/raw/wh300/km2009_040_50400.raw /home/data/km0905/raw/wh300/km2009_040_57600.raw /home/data/km0905/raw/wh300/km2009_040_64800.raw /home/data/km0905/raw/wh300/km2009_040_72000.raw /home/data/km0905/raw/wh300/km2009_040_79200.raw /home/data/km0905/raw/wh300/km2009_041_00000.raw /home/data/km0905/raw/wh300/km2009_041_07200.raw /home/data/km0905/raw/wh300/km2009_041_14400.raw /home/data/km0905/raw/wh300/km2009_041_21600.raw /home/data/km0905/raw/wh300/km2009_041_28800.raw /home/data/km0905/raw/wh300/km2009_041_36000.raw /home/data/km0905/raw/wh300/km2009_041_43200.raw /home/data/km0905/raw/wh300/km2009_041_50400.raw /home/data/km0905/raw/wh300/km2009_041_57600.raw /home/data/km0905/raw/wh300/km2009_041_64800.raw /home/data/km0905/raw/wh300/km2009_041_72000.raw /home/data/km0905/raw/wh300/km2009_041_79200.raw /home/data/km0905/raw/wh300/km2009_042_00000.raw /home/data/km0905/raw/wh300/km2009_042_07200.raw /home/data/km0905/raw/wh300/km2009_042_14400.raw /home/data/km0905/raw/wh300/km2009_042_21600.raw /home/data/km0905/raw/wh300/km2009_042_28800.raw /home/data/km0905/raw/wh300/km2009_042_36000.raw /home/data/km0905/raw/wh300/km2009_042_43200.raw /home/data/km0905/raw/wh300/km2009_042_50400.raw /home/data/km0905/raw/wh300/km2009_042_57600.raw /home/data/km0905/raw/wh300/km2009_042_64800.raw 2009-02-12 18:10:47,138 DEBUG quick_setup load/ldcodas.tmp exists 2009-02-12 18:10:47,139 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:47,139 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/load 2009-02-12 18:10:47,139 DEBUG quick_setup running python command "method" 2009-02-12 18:10:47,139 DEBUG quick_subs in /home/data/km0905/proc/wh300/load 2009-02-12 18:10:47,140 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019', '020', '021', '022', '023', '024'] 2009-02-12 18:10:47,141 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019', '020', '021', '022', '023', '024', '025'] 2009-02-12 18:10:47,142 DEBUG quick_subs starttime is 2009/02/12 16:42:13 2009-02-12 18:10:47,142 DEBUG quick_subs RESETTING thisload_time_range 2009-02-12 18:10:47,143 DEBUG quick_subs time range of data to be loaded: 2009/02/12 16:42:13 to 2009/02/12 18:10:37 2009-02-12 18:10:47,143 DEBUG quick_subs data startdd 42.695984 data enddd 42.757373 2009-02-12 18:10:47,143 DEBUG quick_subs about to load from these cmd files ['ens_blk025.cmd'] 2009-02-12 18:10:47,143 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_km DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2009 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk025.cmd 2009-02-12 18:10:47,144 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2009-02-12 18:10:47,169 DEBUG quick_subs removing a_kmdir.blk 2009-02-12 18:10:47,169 DEBUG quick_subs about to run mkblkdir 2009-02-12 18:10:47,170 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-02-12 18:10:47,170 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-02-12 18:10:47,185 DEBUG quick_subs database passes. 2009-02-12 18:10:47,185 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-12 18:10:47,186 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:47,186 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/adcpdb 2009-02-12 18:10:47,186 DEBUG quick_setup running python command "method" 2009-02-12 18:10:47,186 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:47,187 DEBUG quick_subs extracting time range 2009-02-12 18:10:47,188 DEBUG quick_subs start_end_time 2009/02/07 19:41:37 to 2009/02/12 18:10:20 2009-02-12 18:10:47,188 DEBUG quick_subs dd0: 37.820567 dd1: 42.757176 2009-02-12 18:10:47,189 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-12 18:10:47,189 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:47,189 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/adcpdb 2009-02-12 18:10:47,189 DEBUG quick_setup running python command "method" 2009-02-12 18:10:47,190 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:47,190 DEBUG quick_subs extracting time range 2009-02-12 18:10:47,191 DEBUG quick_subs start_end_time 2009/02/07 19:41:37 to 2009/02/12 18:10:20 2009-02-12 18:10:47,191 DEBUG quick_subs dd0: 37.820567 dd1: 42.757176 2009-02-12 18:10:47,192 DEBUG quick_adcp loaded_time_range is 2009/02/07 19:41:37 to 2009/02/12 18:10:20 2009-02-12 18:10:47,192 DEBUG quick_adcp (37.820567 to 42.757176) 2009-02-12 18:10:47,192 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:47,193 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/adcpdb 2009-02-12 18:10:47,193 DEBUG quick_setup running python command "method" 2009-02-12 18:10:47,193 DEBUG quick_subs dbname: a_km output: a_km.cnh time_ranges: all 2009-02-12 18:10:47,194 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2009-02-12 18:10:47,231 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2009-02-12 18:10:47,231 DEBUG quick_run executing commands from /home/data/km0905/proc/wh300/edit 2009-02-12 18:10:47,231 DEBUG quick_run setup.m exists. not replacing 2009-02-12 18:10:47,232 DEBUG quick_run asetup.m exists. not replacing 2009-02-12 18:10:47,232 DEBUG quick_run aflagit_setup.m exists. not replacing 2009-02-12 18:10:47,232 DEBUG quick_run ------------ step 4: run setflags ------------- 2009-02-12 18:10:47,232 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:47,233 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/edit 2009-02-12 18:10:47,233 DEBUG quick_setup running python command "method" 2009-02-12 18:10:47,233 DEBUG quick_subs dbname: ../adcpdb/a_km pg_min: 50 set_range_bit time_ranges: all 2009-02-12 18:10:47,234 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-02-12 18:10:47,311 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2009-02-12 18:10:47,312 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:47,312 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/nav 2009-02-12 18:10:47,313 DEBUG quick_setup running python command "method" 2009-02-12 18:10:47,319 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2009-02-12 18:10:47,319 DEBUG quick_run hcorr_inst is posmv 2009-02-12 18:10:47,320 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2009-02-12 18:10:47,320 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:47,321 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/cal/rotate 2009-02-12 18:10:47,321 DEBUG quick_setup running python command "method" 2009-02-12 18:10:47,321 DEBUG quick_subs dbname: ../../adcpdb/a_km output: scn.hdg step_size= 1 year_base= 2009 time_ranges: all 2009-02-12 18:10:47,322 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2009-02-12 18:10:47,379 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:47,379 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/cal/rotate 2009-02-12 18:10:47,380 DEBUG quick_setup running python command "method" 2009-02-12 18:10:47,922 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') hcorfile = 'ens_hcorr.asc'; proc_yearbase = 2009; cruiseid = 'km0905'; if exist(hcorfile) plot_hcorstats('comment', cruiseid,... 'proc_yearbase', proc_yearbase,... 'plot_ddrange', 1,... 'plottype','fancy',... 'hcorfile', hcorfile,... 'gps_attname', 'posmv',... 'cruiseid', cruiseid,... 'outfilebase', 'hcorr'); end 2009-02-12 18:10:50,219 DEBUG quick_run ------------ step 7: rotate ------------- 2009-02-12 18:10:50,219 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:50,220 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/cal/rotate 2009-02-12 18:10:50,220 DEBUG quick_setup running python command "method" 2009-02-12 18:10:50,239 DEBUG quick_subs last rotated time from log file: 2009/02/12 17:40:34 2009-02-12 18:10:50,239 DEBUG quick_subs time range of currently loaded data: 2009/02/07 19:41:37 to 2009/02/12 18:10:20 2009-02-12 18:10:50,239 DEBUG quick_subs (37.820567 to 42.757176) 2009-02-12 18:10:50,240 DEBUG quick_setup cal/rotate/rotate.tmp exists 2009-02-12 18:10:50,240 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:50,241 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/cal/rotate 2009-02-12 18:10:50,241 DEBUG quick_setup running python command "method" 2009-02-12 18:10:50,241 DEBUG quick_subs DB_NAME: ../../adcpdb/a_km LOG_FILE: rotate.log TIME_RANGE: 2009/02/12 16:42:13 to 2009/02/12 18:10:37 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2009 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2009-02-12 18:10:50,241 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2009-02-12 18:10:50,247 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-02-12 18:10:50,247 DEBUG quick_setup nav/as_nav.tmp exists 2009-02-12 18:10:50,248 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:50,248 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/nav 2009-02-12 18:10:50,248 DEBUG quick_setup running python command "method" 2009-02-12 18:10:50,248 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/02/07 19:41:37 to 2009/02/12 18:10:20 /* the whole time range */ 2009-02-12 18:10:50,249 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-02-12 18:10:50,354 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-02-12 18:10:50,354 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:50,355 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/nav 2009-02-12 18:10:50,355 DEBUG quick_setup running python command "method" 2009-02-12 18:10:50,355 DEBUG quick_subs fix_file_type: simple reference_file: a_km.nav fix_file: a_km.gps output: a_km.ref year_base= 2009 ensemble_length= 120 gap_tolerance= 10 2009-02-12 18:10:50,355 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-02-12 18:10:50,423 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-02-12 18:10:50,423 DEBUG quick_setup nav/smoothr.tmp exists 2009-02-12 18:10:50,423 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:50,424 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/nav 2009-02-12 18:10:50,424 DEBUG quick_setup running python command "method" 2009-02-12 18:10:50,424 DEBUG quick_subs reference_file: a_km.nav refabs_output: a_km.ref output: a_km.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 120 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-02-12 18:10:50,424 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-02-12 18:10:50,778 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:50,779 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/nav 2009-02-12 18:10:50,779 DEBUG quick_setup running python command "method" 2009-02-12 18:10:50,780 DEBUG call_matlab --> clear all 2009-02-12 18:10:50,815 DEBUG call_matlab <-- >> 2009-02-12 18:10:50,815 DEBUG call_matlab --> close all 2009-02-12 18:10:50,902 DEBUG call_matlab <-- >> 2009-02-12 18:10:50,903 DEBUG call_matlab --> cd /home/data/km0905/proc/wh300/nav 2009-02-12 18:10:50,905 DEBUG call_matlab <-- >> 2009-02-12 18:10:50,906 DEBUG call_matlab --> refsm 2009-02-12 18:10:53,489 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_km opened Searching CODAS database ==> ../adcpdb/a_km for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 3548 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 90 percent done... 100 percent done... >> 2009-02-12 18:10:53,489 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-02-12 18:10:53,490 DEBUG quick_setup nav/putnav.tmp exists 2009-02-12 18:10:53,490 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:53,490 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/nav 2009-02-12 18:10:53,490 DEBUG quick_setup running python command "method" 2009-02-12 18:10:53,491 DEBUG quick_subs dbname: ../adcpdb/a_km position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-02-12 18:10:53,491 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-02-12 18:10:53,640 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-02-12 18:10:53,640 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:53,641 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/nav 2009-02-12 18:10:53,641 DEBUG quick_setup running python command "method" 2009-02-12 18:10:53,642 DEBUG quick_subs Created callrtmp.m 2009-02-12 18:10:53,643 DEBUG call_matlab --> clear all 2009-02-12 18:10:53,654 DEBUG call_matlab <-- >> 2009-02-12 18:10:53,654 DEBUG call_matlab --> close all 2009-02-12 18:10:53,740 DEBUG call_matlab <-- >> 2009-02-12 18:10:53,740 DEBUG call_matlab --> cd /home/data/km0905/proc/wh300/nav 2009-02-12 18:10:53,743 DEBUG call_matlab <-- >> 2009-02-12 18:10:53,743 DEBUG call_matlab --> callrtmp_tmp 2009-02-12 18:10:55,414 DEBUG call_matlab <-- cruise = km0905 cruise = km0905 cruise = km0905 No data available. >> 2009-02-12 18:10:55,414 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2009-02-12 18:10:55,414 DEBUG quick_run find profile flags ------------ *** ------------- 2009-02-12 18:10:55,415 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:55,415 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/edit 2009-02-12 18:10:55,415 DEBUG quick_setup running python command "method" 2009-02-12 18:10:56,776 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2009-02-12 18:10:56,776 DEBUG quick_run starting in: /home/data/km0905/proc/wh300 2009-02-12 18:10:56,776 DEBUG quick_run executing commands from: edit 2009-02-12 18:10:56,779 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_km abadprf_tmp.asc 2009-02-12 18:10:56,784 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_km abadbin_tmp.asc 2009-02-12 18:10:56,792 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_km 2009-02-12 18:10:56,797 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-02-12 18:10:56,847 DEBUG quick_run changing directories back to /home/data/km0905/proc/wh300 2009-02-12 18:10:56,847 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2009-02-12 18:10:56,847 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-02-12 18:10:56,848 DEBUG quick_setup nav/as_nav.tmp exists 2009-02-12 18:10:56,848 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:56,848 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/nav 2009-02-12 18:10:56,848 DEBUG quick_setup running python command "method" 2009-02-12 18:10:56,848 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/02/07 19:41:37 to 2009/02/12 18:10:20 /* the whole time range */ 2009-02-12 18:10:56,849 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-02-12 18:10:56,951 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-02-12 18:10:56,952 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:56,952 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/nav 2009-02-12 18:10:56,952 DEBUG quick_setup running python command "method" 2009-02-12 18:10:56,953 DEBUG quick_subs fix_file_type: simple reference_file: a_km.nav fix_file: a_km.gps output: a_km.ref year_base= 2009 ensemble_length= 120 gap_tolerance= 10 2009-02-12 18:10:56,953 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-02-12 18:10:57,020 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-02-12 18:10:57,021 DEBUG quick_setup nav/smoothr.tmp exists 2009-02-12 18:10:57,021 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:57,021 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/nav 2009-02-12 18:10:57,021 DEBUG quick_setup running python command "method" 2009-02-12 18:10:57,022 DEBUG quick_subs reference_file: a_km.nav refabs_output: a_km.ref output: a_km.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 120 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-02-12 18:10:57,022 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-02-12 18:10:57,401 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:10:57,402 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/nav 2009-02-12 18:10:57,402 DEBUG quick_setup running python command "method" 2009-02-12 18:10:57,402 DEBUG call_matlab --> clear all 2009-02-12 18:10:57,422 DEBUG call_matlab <-- >> 2009-02-12 18:10:57,422 DEBUG call_matlab --> close all 2009-02-12 18:10:57,504 DEBUG call_matlab <-- >> 2009-02-12 18:10:57,504 DEBUG call_matlab --> cd /home/data/km0905/proc/wh300/nav 2009-02-12 18:10:57,507 DEBUG call_matlab <-- >> 2009-02-12 18:10:57,508 DEBUG call_matlab --> refsm 2009-02-12 18:11:00,349 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_km opened Searching CODAS database ==> ../adcpdb/a_km for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 3548 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 90 percent done... 100 percent done... >> 2009-02-12 18:11:00,349 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-02-12 18:11:00,349 DEBUG quick_setup nav/putnav.tmp exists 2009-02-12 18:11:00,349 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:11:00,350 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/nav 2009-02-12 18:11:00,350 DEBUG quick_setup running python command "method" 2009-02-12 18:11:00,350 DEBUG quick_subs dbname: ../adcpdb/a_km position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-02-12 18:11:00,350 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-02-12 18:11:00,535 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-02-12 18:11:00,535 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:11:00,535 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/nav 2009-02-12 18:11:00,536 DEBUG quick_setup running python command "method" 2009-02-12 18:11:00,537 DEBUG quick_subs Created callrtmp.m 2009-02-12 18:11:00,537 DEBUG call_matlab --> clear all 2009-02-12 18:11:00,544 DEBUG call_matlab <-- >> 2009-02-12 18:11:00,544 DEBUG call_matlab --> close all 2009-02-12 18:11:00,604 DEBUG call_matlab <-- >> 2009-02-12 18:11:00,604 DEBUG call_matlab --> cd /home/data/km0905/proc/wh300/nav 2009-02-12 18:11:00,607 DEBUG call_matlab <-- >> 2009-02-12 18:11:00,607 DEBUG call_matlab --> callrtmp_tmp 2009-02-12 18:11:02,096 DEBUG call_matlab <-- cruise = km0905 cruise = km0905 cruise = km0905 No data available. >> 2009-02-12 18:11:02,096 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2009-02-12 18:11:02,097 DEBUG quick_setup edit/lst_temp.tmp exists 2009-02-12 18:11:02,097 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:11:02,097 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/edit 2009-02-12 18:11:02,097 DEBUG quick_setup running python command "method" 2009-02-12 18:11:02,097 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km.tem step_size= 1 year_base= 2009 time_ranges: all 2009-02-12 18:11:02,098 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2009-02-12 18:11:02,142 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:11:02,142 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/edit 2009-02-12 18:11:02,142 DEBUG quick_setup running python command "method" 2009-02-12 18:11:03,350 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2009-02-12 18:11:03,351 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2009-02-12 18:11:03,351 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:11:03,351 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/cal/botmtrk 2009-02-12 18:11:03,351 DEBUG quick_setup running python command "method" 2009-02-12 18:11:03,352 DEBUG quick_subs dbname: ../../adcpdb/a_km output: a_km.btm step_size= 1 year_base= 2009 time_ranges: 2009/02/07 19:41:37 to 2009/02/12 18:10:20 /* whole time range */ 2009-02-12 18:11:03,352 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2009-02-12 18:11:03,371 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2009-02-12 18:11:03,372 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:11:03,372 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/cal/botmtrk 2009-02-12 18:11:03,372 DEBUG quick_setup running python command "method" 2009-02-12 18:11:03,373 DEBUG quick_subs fix_file_type: simple reference_file: a_km.btm fix_file: ../../nav/a_km.gps output: a_km.ref year_base= 2009 ensemble_length= 120 gap_tolerance= 60 2009-02-12 18:11:03,373 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2009-02-12 18:11:03,383 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:11:03,384 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/cal/botmtrk 2009-02-12 18:11:03,384 DEBUG quick_setup running python command "method" 2009-02-12 18:11:03,384 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') [a, ph, gd_mask, d] = ... btcaluv('a_km.ref','a_km.btm',... 'ADCP km0905 step size 1 ', 1); 2009-02-12 18:11:03,628 DEBUG quick_setup nav/as_nav.tmp exists 2009-02-12 18:11:03,629 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:11:03,629 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/nav 2009-02-12 18:11:03,629 DEBUG quick_setup running python command "method" 2009-02-12 18:11:03,630 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/02/07 19:41:37 to 2009/02/12 18:10:20 /* the whole time range */ 2009-02-12 18:11:03,630 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-02-12 18:11:03,780 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2009-02-12 18:11:03,780 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:11:03,781 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/cal/watertrk 2009-02-12 18:11:03,781 DEBUG quick_setup running python command "method" 2009-02-12 18:11:03,781 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_km.gps reference_file: ../../nav/a_km.nav output_file: a_km_7.cal year_base= 2009 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2009-02-12 18:11:03,782 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2009-02-12 18:11:03,820 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:11:03,821 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/cal/watertrk 2009-02-12 18:11:03,821 DEBUG quick_setup running python command "method" 2009-02-12 18:11:03,821 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') adcpcal('a_km_7.cal', 'ADCP km0905 7ens') 2009-02-12 18:11:03,822 DEBUG call_matlab --> clear all 2009-02-12 18:11:03,829 DEBUG call_matlab <-- >> 2009-02-12 18:11:03,830 DEBUG call_matlab --> close all 2009-02-12 18:11:03,918 DEBUG call_matlab <-- >> 2009-02-12 18:11:03,918 DEBUG call_matlab --> cd /home/data/km0905/proc/wh300/cal/watertrk 2009-02-12 18:11:03,922 DEBUG call_matlab <-- >> 2009-02-12 18:11:03,922 DEBUG call_matlab --> calladcpcal_tmp 2009-02-12 18:11:05,424 DEBUG call_matlab <-- figure saved as cal1.ps figure saved as cal2.ps ans = 40 ans = j_ph: 11 j_amp: 10 j_t: 2 j_du: 5 j_dv: 6 j_dt: 9 j_mvar: 8 j_var: 7 calr: [40x11 double] igood: [38x1 double] >> 2009-02-12 18:11:05,424 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2009-02-12 18:11:05,424 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:11:05,424 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/vector 2009-02-12 18:11:05,425 DEBUG quick_setup running python command "method" 2009-02-12 18:11:05,425 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_km.tmp 2009-02-12 18:11:05,430 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:11:05,430 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/vector 2009-02-12 18:11:05,430 DEBUG quick_setup running python command "method" 2009-02-12 18:11:05,431 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2009-02-12 18:11:05,505 DEBUG quick_asect done making vector matfiles 2009-02-12 18:11:05,506 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:11:05,506 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/contour 2009-02-12 18:11:05,506 DEBUG quick_setup running python command "method" 2009-02-12 18:11:05,506 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_km.tmp 2009-02-12 18:11:05,513 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:11:05,513 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/contour 2009-02-12 18:11:05,513 DEBUG quick_setup running python command "method" 2009-02-12 18:11:05,514 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2009-02-12 18:11:05,618 DEBUG quick_setup starting in /home/data/km0905/proc/wh300 2009-02-12 18:11:05,619 DEBUG quick_setup executing commands from /home/data/km0905/proc/wh300/contour 2009-02-12 18:11:05,619 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_km 2009-02-12 18:11:05,890 DEBUG quick_asect done running getmat with "allbins" 2009-02-12 18:11:05,891 INFO root copying NOFIG to /home/adcp/www/figures/wh300_hcorr_plot.png 2009-02-12 18:11:05,891 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/wh300_hcorr_plot_thumb.png 2009-02-12 18:11:05,892 DEBUG root matfile is contour/contour_uv.mat 2009-02-12 18:11:05,893 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/wh300_cont_uv.mat 2009-02-12 18:11:05,894 DEBUG root matfile is vector/vector_uv.mat 2009-02-12 18:11:05,894 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/wh300_vect_uv.mat 2009-02-12 18:11:05,894 DEBUG root matfile is contour/contour_xy.mat 2009-02-12 18:11:05,895 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/wh300_cont_xy.mat 2009-02-12 18:11:05,895 DEBUG root matfile is vector/vector_xy.mat 2009-02-12 18:11:05,895 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/wh300_vect_xy.mat 2009-02-12 18:11:05,896 DEBUG root about to copy file edit/a_km.tem to /home/adcp/www/data/wh300_temp.asc 2009-02-12 18:11:05,897 INFO root copying edit/a_km.tem to /home/adcp/www/data/wh300_temp.asc 2009-02-12 18:11:05,897 INFO root Ending quick_adcp.py 2009-02-12 18:11:05,999 DEBUG quick_setup killed matlab engine