2009-02-12 18:10:05,242 DEBUG root about to write control file parameters to --yearbase 2009 --pingtype nb --cfgbase km0905 --cruisename km0905 --instclass os --instname os38 --dbname a_km --datatype uhdas --datadir /home/data/km0905/raw/os38 --cfgpath /home/data/km0905/proc/os38nb/config --ens_len 300 --ping_headcorr --hcorr_inst posmv --use_topo4edit ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --acc_heading_cutoff 0.018000 2009-02-12 18:10:05,245 DEBUG quick_adcp progdir = /home/currents/programs 2009-02-12 18:10:05,245 DEBUG quick_adcp binos = lnx 2009-02-12 18:10:05,246 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2009-02-12 18:10:05,246 DEBUG quick_setup yearbase is 2009, proc_yearbase is 2009 2009-02-12 18:10:05,246 DEBUG quick_setup processing data logged with uhdas: 2009-02-12 18:10:05,246 DEBUG quick_setup datatype is uhdas 2009-02-12 18:10:05,246 DEBUG quick_setup pingtype is nb 2009-02-12 18:10:05,246 DEBUG quick_setup instclass is os 2009-02-12 18:10:05,247 DEBUG quick_setup no post-processing heading correction will be used 2009-02-12 18:10:05,247 DEBUG quick_setup transducer depth set in *_cfg.m file 2009-02-12 18:10:05,247 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os38'; pingtype = 'nb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'km0905',... 'cfgpath' , '/home/data/km0905/proc/os38nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2009-02-12 18:10:05,247 DEBUG quick_setup ------- starting Matlab engine ------- 2009-02-12 18:10:05,247 DEBUG quick_setup ['/home/currents/programs/matlab'] 2009-02-12 18:10:05,249 DEBUG call_matlab starting to wait for initial prompt 2009-02-12 18:10:06,174 DEBUG call_matlab received initial prompt 2009-02-12 18:10:06,476 DEBUG quick_adcp cwd is /home/data/km0905/proc/os38nb about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-02-12 18:10:06,477 DEBUG quick_adcp original fix file is a_km.gps 2009-02-12 18:10:06,477 DEBUG quick_adcp smoothed nav file is refsm.sm 2009-02-12 18:10:06,477 DEBUG quick_asect extracting matlab files for os38, nb pings 2009-02-12 18:10:06,637 DEBUG quick_subs found 61 files using wildcard expansion from "/home/data/km0905/raw/os38/*.raw" 2009-02-12 18:10:06,637 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/km0905/raw/os38/km2009_037_70775.raw /home/data/km0905/raw/os38/km2009_037_72000.raw /home/data/km0905/raw/os38/km2009_037_79200.raw /home/data/km0905/raw/os38/km2009_038_00000.raw /home/data/km0905/raw/os38/km2009_038_07200.raw /home/data/km0905/raw/os38/km2009_038_14400.raw /home/data/km0905/raw/os38/km2009_038_21600.raw /home/data/km0905/raw/os38/km2009_038_28800.raw /home/data/km0905/raw/os38/km2009_038_36000.raw /home/data/km0905/raw/os38/km2009_038_43200.raw /home/data/km0905/raw/os38/km2009_038_50400.raw /home/data/km0905/raw/os38/km2009_038_57600.raw /home/data/km0905/raw/os38/km2009_038_64800.raw /home/data/km0905/raw/os38/km2009_038_72000.raw /home/data/km0905/raw/os38/km2009_038_79200.raw /home/data/km0905/raw/os38/km2009_039_00000.raw /home/data/km0905/raw/os38/km2009_039_07200.raw /home/data/km0905/raw/os38/km2009_039_14400.raw /home/data/km0905/raw/os38/km2009_039_21600.raw /home/data/km0905/raw/os38/km2009_039_28800.raw /home/data/km0905/raw/os38/km2009_039_36000.raw /home/data/km0905/raw/os38/km2009_039_43200.raw /home/data/km0905/raw/os38/km2009_039_50400.raw /home/data/km0905/raw/os38/km2009_039_57600.raw /home/data/km0905/raw/os38/km2009_039_64800.raw /home/data/km0905/raw/os38/km2009_039_72000.raw /home/data/km0905/raw/os38/km2009_039_79200.raw /home/data/km0905/raw/os38/km2009_040_00000.raw /home/data/km0905/raw/os38/km2009_040_07200.raw /home/data/km0905/raw/os38/km2009_040_14400.raw /home/data/km0905/raw/os38/km2009_040_21600.raw /home/data/km0905/raw/os38/km2009_040_28800.raw /home/data/km0905/raw/os38/km2009_040_36000.raw /home/data/km0905/raw/os38/km2009_040_43200.raw /home/data/km0905/raw/os38/km2009_040_50400.raw /home/data/km0905/raw/os38/km2009_040_57600.raw /home/data/km0905/raw/os38/km2009_040_64800.raw /home/data/km0905/raw/os38/km2009_040_72000.raw /home/data/km0905/raw/os38/km2009_040_79200.raw /home/data/km0905/raw/os38/km2009_041_00000.raw /home/data/km0905/raw/os38/km2009_041_07200.raw /home/data/km0905/raw/os38/km2009_041_14400.raw /home/data/km0905/raw/os38/km2009_041_21600.raw /home/data/km0905/raw/os38/km2009_041_28800.raw /home/data/km0905/raw/os38/km2009_041_36000.raw /home/data/km0905/raw/os38/km2009_041_43200.raw /home/data/km0905/raw/os38/km2009_041_50400.raw /home/data/km0905/raw/os38/km2009_041_57600.raw /home/data/km0905/raw/os38/km2009_041_64800.raw /home/data/km0905/raw/os38/km2009_041_72000.raw /home/data/km0905/raw/os38/km2009_041_79200.raw /home/data/km0905/raw/os38/km2009_042_00000.raw /home/data/km0905/raw/os38/km2009_042_07200.raw /home/data/km0905/raw/os38/km2009_042_14400.raw /home/data/km0905/raw/os38/km2009_042_21600.raw /home/data/km0905/raw/os38/km2009_042_28800.raw /home/data/km0905/raw/os38/km2009_042_36000.raw /home/data/km0905/raw/os38/km2009_042_43200.raw /home/data/km0905/raw/os38/km2009_042_50400.raw /home/data/km0905/raw/os38/km2009_042_57600.raw /home/data/km0905/raw/os38/km2009_042_64800.raw 2009-02-12 18:10:06,637 DEBUG quick_adcp LASTFILES invoked. using only 61 files from end of filelist 2009-02-12 18:10:06,638 DEBUG quick_adcp using delblks = 1 2009-02-12 18:10:06,638 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/km0905/raw/os38/km2009_037_70775.raw /home/data/km0905/raw/os38/km2009_037_72000.raw /home/data/km0905/raw/os38/km2009_037_79200.raw /home/data/km0905/raw/os38/km2009_038_00000.raw /home/data/km0905/raw/os38/km2009_038_07200.raw /home/data/km0905/raw/os38/km2009_038_14400.raw /home/data/km0905/raw/os38/km2009_038_21600.raw /home/data/km0905/raw/os38/km2009_038_28800.raw /home/data/km0905/raw/os38/km2009_038_36000.raw /home/data/km0905/raw/os38/km2009_038_43200.raw /home/data/km0905/raw/os38/km2009_038_50400.raw /home/data/km0905/raw/os38/km2009_038_57600.raw /home/data/km0905/raw/os38/km2009_038_64800.raw /home/data/km0905/raw/os38/km2009_038_72000.raw /home/data/km0905/raw/os38/km2009_038_79200.raw /home/data/km0905/raw/os38/km2009_039_00000.raw /home/data/km0905/raw/os38/km2009_039_07200.raw /home/data/km0905/raw/os38/km2009_039_14400.raw /home/data/km0905/raw/os38/km2009_039_21600.raw /home/data/km0905/raw/os38/km2009_039_28800.raw /home/data/km0905/raw/os38/km2009_039_36000.raw /home/data/km0905/raw/os38/km2009_039_43200.raw /home/data/km0905/raw/os38/km2009_039_50400.raw /home/data/km0905/raw/os38/km2009_039_57600.raw /home/data/km0905/raw/os38/km2009_039_64800.raw /home/data/km0905/raw/os38/km2009_039_72000.raw /home/data/km0905/raw/os38/km2009_039_79200.raw /home/data/km0905/raw/os38/km2009_040_00000.raw /home/data/km0905/raw/os38/km2009_040_07200.raw /home/data/km0905/raw/os38/km2009_040_14400.raw /home/data/km0905/raw/os38/km2009_040_21600.raw /home/data/km0905/raw/os38/km2009_040_28800.raw /home/data/km0905/raw/os38/km2009_040_36000.raw /home/data/km0905/raw/os38/km2009_040_43200.raw /home/data/km0905/raw/os38/km2009_040_50400.raw /home/data/km0905/raw/os38/km2009_040_57600.raw /home/data/km0905/raw/os38/km2009_040_64800.raw /home/data/km0905/raw/os38/km2009_040_72000.raw /home/data/km0905/raw/os38/km2009_040_79200.raw /home/data/km0905/raw/os38/km2009_041_00000.raw /home/data/km0905/raw/os38/km2009_041_07200.raw /home/data/km0905/raw/os38/km2009_041_14400.raw /home/data/km0905/raw/os38/km2009_041_21600.raw /home/data/km0905/raw/os38/km2009_041_28800.raw /home/data/km0905/raw/os38/km2009_041_36000.raw /home/data/km0905/raw/os38/km2009_041_43200.raw /home/data/km0905/raw/os38/km2009_041_50400.raw /home/data/km0905/raw/os38/km2009_041_57600.raw /home/data/km0905/raw/os38/km2009_041_64800.raw /home/data/km0905/raw/os38/km2009_041_72000.raw /home/data/km0905/raw/os38/km2009_041_79200.raw /home/data/km0905/raw/os38/km2009_042_00000.raw /home/data/km0905/raw/os38/km2009_042_07200.raw /home/data/km0905/raw/os38/km2009_042_14400.raw /home/data/km0905/raw/os38/km2009_042_21600.raw /home/data/km0905/raw/os38/km2009_042_28800.raw /home/data/km0905/raw/os38/km2009_042_36000.raw /home/data/km0905/raw/os38/km2009_042_43200.raw /home/data/km0905/raw/os38/km2009_042_50400.raw /home/data/km0905/raw/os38/km2009_042_57600.raw /home/data/km0905/raw/os38/km2009_042_64800.raw 2009-02-12 18:10:06,640 DEBUG quick_adcp Thu Feb 12 18:10:06 2009 running quick_adcp.py as follows: --cntfile /home/data/km0905/proc/os38nb/os38nb_qpy.cnt ----- adcpsect variables ------ afilebase a_km cbasename contour dbname a_km dbpath ../adcpdb deeper_boundaries [100, 150, 250, 350, 450, 550, 650, 750, 850, 950, 1050, 1150, 1250, 1350, 1450, 1550, 1650] firstdepth 46 gridnum 70 increment 25 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2009 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.018 adjust_time 1 afilebase a_km allow_reload True auto True bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase km0905 cfgpath /home/data/km0905/proc/os38nb/config cntfile /home/data/km0905/proc/os38nb/os38nb_qpy.cnt commands None cruisename km0905 data_def vmadcp.def datadir /home/data/km0905/raw/os38 datafile_glob *.raw datatype uhdas dbname a_km dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 300 ensgyrorbin False expert None filelist ['/home/data/km0905/raw/os38/km2009_037_70775.raw', '/home/data/km0905/raw/os38/km2009_037_72000.raw', '/home/data/km0905/raw/os38/km2009_037_79200.raw', '/home/data/km0905/raw/os38/km2009_038_00000.raw', '/home/data/km0905/raw/os38/km2009_038_07200.raw', '/home/data/km0905/raw/os38/km2009_038_14400.raw', '/home/data/km0905/raw/os38/km2009_038_21600.raw', '/home/data/km0905/raw/os38/km2009_038_28800.raw', '/home/data/km0905/raw/os38/km2009_038_36000.raw', '/home/data/km0905/raw/os38/km2009_038_43200.raw', '/home/data/km0905/raw/os38/km2009_038_50400.raw', '/home/data/km0905/raw/os38/km2009_038_57600.raw', '/home/data/km0905/raw/os38/km2009_038_64800.raw', '/home/data/km0905/raw/os38/km2009_038_72000.raw', '/home/data/km0905/raw/os38/km2009_038_79200.raw', '/home/data/km0905/raw/os38/km2009_039_00000.raw', '/home/data/km0905/raw/os38/km2009_039_07200.raw', '/home/data/km0905/raw/os38/km2009_039_14400.raw', '/home/data/km0905/raw/os38/km2009_039_21600.raw', '/home/data/km0905/raw/os38/km2009_039_28800.raw', '/home/data/km0905/raw/os38/km2009_039_36000.raw', '/home/data/km0905/raw/os38/km2009_039_43200.raw', '/home/data/km0905/raw/os38/km2009_039_50400.raw', '/home/data/km0905/raw/os38/km2009_039_57600.raw', '/home/data/km0905/raw/os38/km2009_039_64800.raw', '/home/data/km0905/raw/os38/km2009_039_72000.raw', '/home/data/km0905/raw/os38/km2009_039_79200.raw', '/home/data/km0905/raw/os38/km2009_040_00000.raw', '/home/data/km0905/raw/os38/km2009_040_07200.raw', '/home/data/km0905/raw/os38/km2009_040_14400.raw', '/home/data/km0905/raw/os38/km2009_040_21600.raw', '/home/data/km0905/raw/os38/km2009_040_28800.raw', '/home/data/km0905/raw/os38/km2009_040_36000.raw', '/home/data/km0905/raw/os38/km2009_040_43200.raw', '/home/data/km0905/raw/os38/km2009_040_50400.raw', '/home/data/km0905/raw/os38/km2009_040_57600.raw', '/home/data/km0905/raw/os38/km2009_040_64800.raw', '/home/data/km0905/raw/os38/km2009_040_72000.raw', '/home/data/km0905/raw/os38/km2009_040_79200.raw', '/home/data/km0905/raw/os38/km2009_041_00000.raw', '/home/data/km0905/raw/os38/km2009_041_07200.raw', '/home/data/km0905/raw/os38/km2009_041_14400.raw', '/home/data/km0905/raw/os38/km2009_041_21600.raw', '/home/data/km0905/raw/os38/km2009_041_28800.raw', '/home/data/km0905/raw/os38/km2009_041_36000.raw', '/home/data/km0905/raw/os38/km2009_041_43200.raw', '/home/data/km0905/raw/os38/km2009_041_50400.raw', '/home/data/km0905/raw/os38/km2009_041_57600.raw', '/home/data/km0905/raw/os38/km2009_041_64800.raw', '/home/data/km0905/raw/os38/km2009_041_72000.raw', '/home/data/km0905/raw/os38/km2009_041_79200.raw', '/home/data/km0905/raw/os38/km2009_042_00000.raw', '/home/data/km0905/raw/os38/km2009_042_07200.raw', '/home/data/km0905/raw/os38/km2009_042_14400.raw', '/home/data/km0905/raw/os38/km2009_042_21600.raw', '/home/data/km0905/raw/os38/km2009_042_28800.raw', '/home/data/km0905/raw/os38/km2009_042_36000.raw', '/home/data/km0905/raw/os38/km2009_042_43200.raw', '/home/data/km0905/raw/os38/km2009_042_50400.raw', '/home/data/km0905/raw/os38/km2009_042_57600.raw', '/home/data/km0905/raw/os38/km2009_042_64800.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 46 fixfile a_km.gps hcorr_inst posmv head_func None help False hidedisplay True howto_lta False howto_ping False instclass os instname os38 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = os; instname = 'os38'; pingtype = 'nb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'km0905',... 'cfgpath' , '/home/data/km0905/proc/os38nb/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_km.gps overview False pgmin 50 ping_headcorr True pingtype nb post_headcorr False proc_yearbase 2009 procdir os38nb progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/km0905/raw/os38/km2009_037_70775.raw', '/home/data/km0905/raw/os38/km2009_037_72000.raw', '/home/data/km0905/raw/os38/km2009_037_79200.raw', '/home/data/km0905/raw/os38/km2009_038_00000.raw', '/home/data/km0905/raw/os38/km2009_038_07200.raw', '/home/data/km0905/raw/os38/km2009_038_14400.raw', '/home/data/km0905/raw/os38/km2009_038_21600.raw', '/home/data/km0905/raw/os38/km2009_038_28800.raw', '/home/data/km0905/raw/os38/km2009_038_36000.raw', '/home/data/km0905/raw/os38/km2009_038_43200.raw', '/home/data/km0905/raw/os38/km2009_038_50400.raw', '/home/data/km0905/raw/os38/km2009_038_57600.raw', '/home/data/km0905/raw/os38/km2009_038_64800.raw', '/home/data/km0905/raw/os38/km2009_038_72000.raw', '/home/data/km0905/raw/os38/km2009_038_79200.raw', '/home/data/km0905/raw/os38/km2009_039_00000.raw', '/home/data/km0905/raw/os38/km2009_039_07200.raw', '/home/data/km0905/raw/os38/km2009_039_14400.raw', '/home/data/km0905/raw/os38/km2009_039_21600.raw', '/home/data/km0905/raw/os38/km2009_039_28800.raw', '/home/data/km0905/raw/os38/km2009_039_36000.raw', '/home/data/km0905/raw/os38/km2009_039_43200.raw', '/home/data/km0905/raw/os38/km2009_039_50400.raw', '/home/data/km0905/raw/os38/km2009_039_57600.raw', '/home/data/km0905/raw/os38/km2009_039_64800.raw', '/home/data/km0905/raw/os38/km2009_039_72000.raw', '/home/data/km0905/raw/os38/km2009_039_79200.raw', '/home/data/km0905/raw/os38/km2009_040_00000.raw', '/home/data/km0905/raw/os38/km2009_040_07200.raw', '/home/data/km0905/raw/os38/km2009_040_14400.raw', '/home/data/km0905/raw/os38/km2009_040_21600.raw', '/home/data/km0905/raw/os38/km2009_040_28800.raw', '/home/data/km0905/raw/os38/km2009_040_36000.raw', '/home/data/km0905/raw/os38/km2009_040_43200.raw', '/home/data/km0905/raw/os38/km2009_040_50400.raw', '/home/data/km0905/raw/os38/km2009_040_57600.raw', '/home/data/km0905/raw/os38/km2009_040_64800.raw', '/home/data/km0905/raw/os38/km2009_040_72000.raw', '/home/data/km0905/raw/os38/km2009_040_79200.raw', '/home/data/km0905/raw/os38/km2009_041_00000.raw', '/home/data/km0905/raw/os38/km2009_041_07200.raw', '/home/data/km0905/raw/os38/km2009_041_14400.raw', '/home/data/km0905/raw/os38/km2009_041_21600.raw', '/home/data/km0905/raw/os38/km2009_041_28800.raw', '/home/data/km0905/raw/os38/km2009_041_36000.raw', '/home/data/km0905/raw/os38/km2009_041_43200.raw', '/home/data/km0905/raw/os38/km2009_041_50400.raw', '/home/data/km0905/raw/os38/km2009_041_57600.raw', '/home/data/km0905/raw/os38/km2009_041_64800.raw', '/home/data/km0905/raw/os38/km2009_041_72000.raw', '/home/data/km0905/raw/os38/km2009_041_79200.raw', '/home/data/km0905/raw/os38/km2009_042_00000.raw', '/home/data/km0905/raw/os38/km2009_042_07200.raw', '/home/data/km0905/raw/os38/km2009_042_14400.raw', '/home/data/km0905/raw/os38/km2009_042_21600.raw', '/home/data/km0905/raw/os38/km2009_042_28800.raw', '/home/data/km0905/raw/os38/km2009_042_36000.raw', '/home/data/km0905/raw/os38/km2009_042_43200.raw', '/home/data/km0905/raw/os38/km2009_042_50400.raw', '/home/data/km0905/raw/os38/km2009_042_57600.raw', '/home/data/km0905/raw/os38/km2009_042_64800.raw'] setup_info False skip_avg True smfile refsm.sm steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_matplotlib False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2009 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-02-12 18:10:06,641 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2009-02-12 18:10:06,641 DEBUG quick_run scanning files for time ranges... 2009-02-12 18:10:06,642 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb/scan 2009-02-12 18:10:06,642 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/scan 2009-02-12 18:10:06,642 DEBUG quick_setup running python command "method" 2009-02-12 18:10:06,643 DEBUG call_matlab --> clear all 2009-02-12 18:10:06,650 DEBUG call_matlab <-- >> 2009-02-12 18:10:06,650 DEBUG call_matlab --> close all 2009-02-12 18:10:06,734 DEBUG call_matlab <-- >> 2009-02-12 18:10:06,735 DEBUG call_matlab --> cd /home/data/km0905/proc/os38nb/scan 2009-02-12 18:10:06,738 DEBUG call_matlab <-- >> 2009-02-12 18:10:06,738 DEBUG call_matlab --> scan_tmp 2009-02-12 18:10:07,939 DEBUG call_matlab <-- getting config files from "/home/data/km0905/proc/os38nb/config" running "km0905_cfg.m" running "km0905_proc.m" writing scan info to a_km.scn >> 2009-02-12 18:10:07,939 DEBUG quick_run writing time range from a_km.scn to a_km.tr 2009-02-12 18:10:07,939 DEBUG quick_run getting scan time range 2009-02-12 18:10:07,940 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:07,940 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/scan 2009-02-12 18:10:07,940 DEBUG quick_setup running python command "method" 2009-02-12 18:10:07,940 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:07,942 DEBUG quick_subs extracting time range 2009-02-12 18:10:07,944 DEBUG quick_subs start_end_time 2009/02/07 19:39:41 to 2009/02/12 18:09:06 2009-02-12 18:10:07,944 DEBUG quick_subs dd0: 37.819225 dd1: 42.756319 2009-02-12 18:10:07,945 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/km0905/proc/os38nb 2009-02-12 18:10:07,945 DEBUG quick_adcp looking for database with adcpdb/a_km*.blk 2009-02-12 18:10:07,946 DEBUG quick_adcp database found: listing blocks 2009-02-12 18:10:07,947 DEBUG quick_subs removing a_kmdir.blk 2009-02-12 18:10:07,947 DEBUG quick_subs about to run mkblkdir 2009-02-12 18:10:07,948 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-02-12 18:10:07,948 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-02-12 18:10:07,960 DEBUG quick_subs database passes. 2009-02-12 18:10:07,960 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-12 18:10:07,961 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:07,961 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/adcpdb 2009-02-12 18:10:07,961 DEBUG quick_setup running python command "method" 2009-02-12 18:10:07,962 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:07,962 DEBUG quick_subs extracting time range 2009-02-12 18:10:07,963 DEBUG quick_subs start_end_time 2009/02/07 19:44:47 to 2009/02/12 17:37:55 2009-02-12 18:10:07,963 DEBUG quick_subs dd0: 37.822766 dd1: 42.734664 2009-02-12 18:10:07,963 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-12 18:10:07,964 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:07,964 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/adcpdb 2009-02-12 18:10:07,964 DEBUG quick_setup running python command "method" 2009-02-12 18:10:07,964 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:07,965 DEBUG quick_subs extracting time range 2009-02-12 18:10:07,965 DEBUG quick_subs start_end_time 2009/02/07 19:44:47 to 2009/02/12 17:37:55 2009-02-12 18:10:07,966 DEBUG quick_subs dd0: 37.822766 dd1: 42.734664 2009-02-12 18:10:07,966 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2009-02-12 18:10:07,966 DEBUG quick_adcp origdb_time_range is 2009/02/07 19:44:47 to 2009/02/12 17:37:55 2009-02-12 18:10:07,967 DEBUG quick_adcp (37.822766 to 42.734664) 2009-02-12 18:10:07,967 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2009-02-12 18:10:07,968 DEBUG quick_subs getting current (remaining after deletion) database times 2009-02-12 18:10:07,968 DEBUG quick_subs ['adcpdb/a_kmdir.blk', 'adcpdb/a_km003.blk', 'adcpdb/a_km001.blk', 'adcpdb/a_km007.blk', 'adcpdb/a_km009.blk', 'adcpdb/a_km008.blk', 'adcpdb/a_km006.blk', 'adcpdb/a_km004.blk', 'adcpdb/a_km002.blk', 'adcpdb/a_km010.blk', 'adcpdb/a_km005.blk'] 2009-02-12 18:10:07,968 DEBUG quick_subs length is 11 2009-02-12 18:10:07,969 DEBUG quick_subs removing a_kmdir.blk 2009-02-12 18:10:07,969 DEBUG quick_subs about to run mkblkdir 2009-02-12 18:10:07,969 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-02-12 18:10:07,970 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-02-12 18:10:07,984 DEBUG quick_subs database passes. 2009-02-12 18:10:07,985 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-12 18:10:07,985 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:07,985 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/adcpdb 2009-02-12 18:10:07,986 DEBUG quick_setup running python command "method" 2009-02-12 18:10:07,986 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:07,987 DEBUG quick_subs extracting time range 2009-02-12 18:10:07,987 DEBUG quick_subs start_end_time 2009/02/07 19:44:47 to 2009/02/12 17:37:55 2009-02-12 18:10:07,987 DEBUG quick_subs dd0: 37.822766 dd1: 42.734664 2009-02-12 18:10:07,988 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:07,988 DEBUG quick_subs reading time range 2009-02-12 18:10:07,988 DEBUG quick_subs start_end_time 2009/02/07 19:44:47 to 2009/02/12 17:37:55 2009-02-12 18:10:07,989 DEBUG quick_subs dd0: 37.822766 dd1: 42.734664 2009-02-12 18:10:07,989 INFO quick_subs Thu Feb 12 18:10:07 2009 2009-02-12 18:10:07,989 INFO quick_subs checking database time range by listblk 2009-02-12 18:10:07,990 DEBUG quick_subs removing a_kmdir.blk 2009-02-12 18:10:07,990 DEBUG quick_subs about to run mkblkdir 2009-02-12 18:10:07,990 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-02-12 18:10:07,991 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-02-12 18:10:08,001 DEBUG quick_subs database passes. 2009-02-12 18:10:08,002 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-12 18:10:08,002 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:08,002 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/adcpdb 2009-02-12 18:10:08,003 DEBUG quick_setup running python command "method" 2009-02-12 18:10:08,003 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:08,004 DEBUG quick_subs extracting time range 2009-02-12 18:10:08,004 DEBUG quick_subs start_end_time 2009/02/07 19:44:47 to 2009/02/12 17:37:55 2009-02-12 18:10:08,004 DEBUG quick_subs dd0: 37.822766 dd1: 42.734664 2009-02-12 18:10:08,007 INFO quick_subs found line /* 0 n= 146 a_km001.blk */ 2009/02/07 19:44:47 to 2009/02/08 08:09:09 2009-02-12 18:10:08,008 INFO quick_subs found line /* 1 n= 146 a_km002.blk */ 2009/02/08 08:14:15 to 2009/02/08 20:33:42 2009-02-12 18:10:08,008 INFO quick_subs found line /* 2 n= 146 a_km003.blk */ 2009/02/08 20:38:48 to 2009/02/09 09:03:22 2009-02-12 18:10:08,008 INFO quick_subs found line /* 3 n= 146 a_km004.blk */ 2009/02/09 09:08:28 to 2009/02/09 21:27:56 2009-02-12 18:10:08,009 INFO quick_subs found line /* 4 n= 146 a_km005.blk */ 2009/02/09 21:33:02 to 2009/02/10 09:52:29 2009-02-12 18:10:08,009 INFO quick_subs found line /* 5 n= 146 a_km006.blk */ 2009/02/10 09:57:35 to 2009/02/10 22:17:03 2009-02-12 18:10:08,009 INFO quick_subs found line /* 6 n= 146 a_km007.blk */ 2009/02/10 22:22:09 to 2009/02/11 10:41:36 2009-02-12 18:10:08,009 INFO quick_subs found line /* 7 n= 146 a_km008.blk */ 2009/02/11 10:46:42 to 2009/02/11 23:11:16 2009-02-12 18:10:08,010 INFO quick_subs found line /* 8 n= 146 a_km009.blk */ 2009/02/11 23:16:22 to 2009/02/12 11:35:50 2009-02-12 18:10:08,010 INFO quick_subs found line /* 9 n= 71 a_km010.blk */ 2009/02/12 11:40:56 to 2009/02/12 17:37:55 2009-02-12 18:10:08,010 INFO quick_subs scan data start at 37.8192245 2009-02-12 18:10:08,011 INFO quick_subs scan time range: 2009/02/07 19:39:41 to 2009/02/12 18:09:06 2009-02-12 18:10:08,011 INFO quick_subs codasdb ends at 42.7346644 (2009/02/12 17:37:55) 2009-02-12 18:10:08,011 DEBUG quick_subs ... changed dirs, in /home/data/km0905/proc/os38nb/adcpdb 2009-02-12 18:10:08,012 DEBUG quick_subs deleting these files: ['a_km010.blk'] 2009-02-12 18:10:08,013 DEBUG quick_subs getting current (remaining after deletion) database times 2009-02-12 18:10:08,013 DEBUG quick_subs ['adcpdb/a_km003.blk', 'adcpdb/a_km001.blk', 'adcpdb/a_km007.blk', 'adcpdb/a_km009.blk', 'adcpdb/a_km008.blk', 'adcpdb/a_km006.blk', 'adcpdb/a_km004.blk', 'adcpdb/a_km002.blk', 'adcpdb/a_km005.blk'] 2009-02-12 18:10:08,014 DEBUG quick_subs length is 9 2009-02-12 18:10:08,014 DEBUG quick_subs about to run mkblkdir 2009-02-12 18:10:08,014 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-02-12 18:10:08,015 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-02-12 18:10:08,028 DEBUG quick_subs database passes. 2009-02-12 18:10:08,028 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-12 18:10:08,029 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:08,029 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/adcpdb 2009-02-12 18:10:08,029 DEBUG quick_setup running python command "method" 2009-02-12 18:10:08,030 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:08,030 DEBUG quick_subs extracting time range 2009-02-12 18:10:08,031 DEBUG quick_subs start_end_time 2009/02/07 19:44:47 to 2009/02/12 11:35:50 2009-02-12 18:10:08,031 DEBUG quick_subs dd0: 37.822766 dd1: 42.483218 2009-02-12 18:10:08,031 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:08,032 DEBUG quick_subs reading time range 2009-02-12 18:10:08,032 DEBUG quick_subs start_end_time 2009/02/07 19:44:47 to 2009/02/12 11:35:50 2009-02-12 18:10:08,032 DEBUG quick_subs dd0: 37.822766 dd1: 42.483218 2009-02-12 18:10:08,033 DEBUG quick_subs codas database currently goes from 2009/02/07 19:44:47 to 2009/02/12 11:35:50 2009-02-12 18:10:08,033 DEBUG quick_subs (37.822766 to 42.483218) 2009-02-12 18:10:08,034 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009 2009-02-12 18:10:08,035 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 2009-02-12 18:10:08,035 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009'] 2009-02-12 18:10:08,036 DEBUG quick_subs checked: unloaded blkstrs: ['010'] 2009-02-12 18:10:08,036 DEBUG quick_subs first unloaded file is load/ens_blk010.cmd 2009-02-12 18:10:08,037 DEBUG quick_subs data goes from 2009/02/12 11:40:56 to 2009/02/12 18:09:06 2009-02-12 18:10:08,038 DEBUG quick_subs (42.486759 to 42.756319) 2009-02-12 18:10:08,038 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/km0905/raw/os38/km2009_037_70775.raw /home/data/km0905/raw/os38/km2009_037_72000.raw /home/data/km0905/raw/os38/km2009_037_79200.raw /home/data/km0905/raw/os38/km2009_038_00000.raw /home/data/km0905/raw/os38/km2009_038_07200.raw /home/data/km0905/raw/os38/km2009_038_14400.raw /home/data/km0905/raw/os38/km2009_038_21600.raw /home/data/km0905/raw/os38/km2009_038_28800.raw /home/data/km0905/raw/os38/km2009_038_36000.raw /home/data/km0905/raw/os38/km2009_038_43200.raw /home/data/km0905/raw/os38/km2009_038_50400.raw /home/data/km0905/raw/os38/km2009_038_57600.raw /home/data/km0905/raw/os38/km2009_038_64800.raw /home/data/km0905/raw/os38/km2009_038_72000.raw /home/data/km0905/raw/os38/km2009_038_79200.raw /home/data/km0905/raw/os38/km2009_039_00000.raw /home/data/km0905/raw/os38/km2009_039_07200.raw /home/data/km0905/raw/os38/km2009_039_14400.raw /home/data/km0905/raw/os38/km2009_039_21600.raw /home/data/km0905/raw/os38/km2009_039_28800.raw /home/data/km0905/raw/os38/km2009_039_36000.raw /home/data/km0905/raw/os38/km2009_039_43200.raw /home/data/km0905/raw/os38/km2009_039_50400.raw /home/data/km0905/raw/os38/km2009_039_57600.raw /home/data/km0905/raw/os38/km2009_039_64800.raw /home/data/km0905/raw/os38/km2009_039_72000.raw /home/data/km0905/raw/os38/km2009_039_79200.raw /home/data/km0905/raw/os38/km2009_040_00000.raw /home/data/km0905/raw/os38/km2009_040_07200.raw /home/data/km0905/raw/os38/km2009_040_14400.raw /home/data/km0905/raw/os38/km2009_040_21600.raw /home/data/km0905/raw/os38/km2009_040_28800.raw /home/data/km0905/raw/os38/km2009_040_36000.raw /home/data/km0905/raw/os38/km2009_040_43200.raw /home/data/km0905/raw/os38/km2009_040_50400.raw /home/data/km0905/raw/os38/km2009_040_57600.raw /home/data/km0905/raw/os38/km2009_040_64800.raw /home/data/km0905/raw/os38/km2009_040_72000.raw /home/data/km0905/raw/os38/km2009_040_79200.raw /home/data/km0905/raw/os38/km2009_041_00000.raw /home/data/km0905/raw/os38/km2009_041_07200.raw /home/data/km0905/raw/os38/km2009_041_14400.raw /home/data/km0905/raw/os38/km2009_041_21600.raw /home/data/km0905/raw/os38/km2009_041_28800.raw /home/data/km0905/raw/os38/km2009_041_36000.raw /home/data/km0905/raw/os38/km2009_041_43200.raw /home/data/km0905/raw/os38/km2009_041_50400.raw /home/data/km0905/raw/os38/km2009_041_57600.raw /home/data/km0905/raw/os38/km2009_041_64800.raw /home/data/km0905/raw/os38/km2009_041_72000.raw /home/data/km0905/raw/os38/km2009_041_79200.raw /home/data/km0905/raw/os38/km2009_042_00000.raw /home/data/km0905/raw/os38/km2009_042_07200.raw /home/data/km0905/raw/os38/km2009_042_14400.raw /home/data/km0905/raw/os38/km2009_042_21600.raw /home/data/km0905/raw/os38/km2009_042_28800.raw /home/data/km0905/raw/os38/km2009_042_36000.raw /home/data/km0905/raw/os38/km2009_042_43200.raw /home/data/km0905/raw/os38/km2009_042_50400.raw /home/data/km0905/raw/os38/km2009_042_57600.raw /home/data/km0905/raw/os38/km2009_042_64800.raw 2009-02-12 18:10:08,038 INFO quick_run Thu Feb 12 18:10:08 2009 2009-02-12 18:10:08,038 INFO quick_run about to load uhdas files 2009-02-12 18:10:08,039 INFO quick_run /home/data/km0905/raw/os38/km2009_037_70775.raw /home/data/km0905/raw/os38/km2009_037_72000.raw /home/data/km0905/raw/os38/km2009_037_79200.raw /home/data/km0905/raw/os38/km2009_038_00000.raw /home/data/km0905/raw/os38/km2009_038_07200.raw /home/data/km0905/raw/os38/km2009_038_14400.raw /home/data/km0905/raw/os38/km2009_038_21600.raw /home/data/km0905/raw/os38/km2009_038_28800.raw /home/data/km0905/raw/os38/km2009_038_36000.raw /home/data/km0905/raw/os38/km2009_038_43200.raw /home/data/km0905/raw/os38/km2009_038_50400.raw /home/data/km0905/raw/os38/km2009_038_57600.raw /home/data/km0905/raw/os38/km2009_038_64800.raw /home/data/km0905/raw/os38/km2009_038_72000.raw /home/data/km0905/raw/os38/km2009_038_79200.raw /home/data/km0905/raw/os38/km2009_039_00000.raw /home/data/km0905/raw/os38/km2009_039_07200.raw /home/data/km0905/raw/os38/km2009_039_14400.raw /home/data/km0905/raw/os38/km2009_039_21600.raw /home/data/km0905/raw/os38/km2009_039_28800.raw /home/data/km0905/raw/os38/km2009_039_36000.raw /home/data/km0905/raw/os38/km2009_039_43200.raw /home/data/km0905/raw/os38/km2009_039_50400.raw /home/data/km0905/raw/os38/km2009_039_57600.raw /home/data/km0905/raw/os38/km2009_039_64800.raw /home/data/km0905/raw/os38/km2009_039_72000.raw /home/data/km0905/raw/os38/km2009_039_79200.raw /home/data/km0905/raw/os38/km2009_040_00000.raw /home/data/km0905/raw/os38/km2009_040_07200.raw /home/data/km0905/raw/os38/km2009_040_14400.raw /home/data/km0905/raw/os38/km2009_040_21600.raw /home/data/km0905/raw/os38/km2009_040_28800.raw /home/data/km0905/raw/os38/km2009_040_36000.raw /home/data/km0905/raw/os38/km2009_040_43200.raw /home/data/km0905/raw/os38/km2009_040_50400.raw /home/data/km0905/raw/os38/km2009_040_57600.raw /home/data/km0905/raw/os38/km2009_040_64800.raw /home/data/km0905/raw/os38/km2009_040_72000.raw /home/data/km0905/raw/os38/km2009_040_79200.raw /home/data/km0905/raw/os38/km2009_041_00000.raw /home/data/km0905/raw/os38/km2009_041_07200.raw /home/data/km0905/raw/os38/km2009_041_14400.raw /home/data/km0905/raw/os38/km2009_041_21600.raw /home/data/km0905/raw/os38/km2009_041_28800.raw /home/data/km0905/raw/os38/km2009_041_36000.raw /home/data/km0905/raw/os38/km2009_041_43200.raw /home/data/km0905/raw/os38/km2009_041_50400.raw /home/data/km0905/raw/os38/km2009_041_57600.raw /home/data/km0905/raw/os38/km2009_041_64800.raw /home/data/km0905/raw/os38/km2009_041_72000.raw /home/data/km0905/raw/os38/km2009_041_79200.raw /home/data/km0905/raw/os38/km2009_042_00000.raw /home/data/km0905/raw/os38/km2009_042_07200.raw /home/data/km0905/raw/os38/km2009_042_14400.raw /home/data/km0905/raw/os38/km2009_042_21600.raw /home/data/km0905/raw/os38/km2009_042_28800.raw /home/data/km0905/raw/os38/km2009_042_36000.raw /home/data/km0905/raw/os38/km2009_042_43200.raw /home/data/km0905/raw/os38/km2009_042_50400.raw /home/data/km0905/raw/os38/km2009_042_57600.raw /home/data/km0905/raw/os38/km2009_042_64800.raw 2009-02-12 18:10:08,039 DEBUG quick_setup load/ldcodas.tmp exists 2009-02-12 18:10:08,039 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:08,039 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/load 2009-02-12 18:10:08,040 DEBUG quick_setup running python command "method" 2009-02-12 18:10:08,040 DEBUG quick_subs in /home/data/km0905/proc/os38nb/load 2009-02-12 18:10:08,041 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009'] 2009-02-12 18:10:08,041 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010'] 2009-02-12 18:10:08,042 DEBUG quick_subs starttime is 2009/02/12 11:40:56 2009-02-12 18:10:08,043 DEBUG quick_subs RESETTING thisload_time_range 2009-02-12 18:10:08,043 DEBUG quick_subs time range of data to be loaded: 2009/02/12 11:40:56 to 2009/02/12 18:09:06 2009-02-12 18:10:08,043 DEBUG quick_subs data startdd 42.486759 data enddd 42.756319 2009-02-12 18:10:08,044 DEBUG quick_subs about to load from these cmd files ['ens_blk010.cmd'] 2009-02-12 18:10:08,044 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_km DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2009 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk010.cmd 2009-02-12 18:10:08,044 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2009-02-12 18:10:08,085 DEBUG quick_subs removing a_kmdir.blk 2009-02-12 18:10:08,086 DEBUG quick_subs about to run mkblkdir 2009-02-12 18:10:08,086 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-02-12 18:10:08,087 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-02-12 18:10:08,097 DEBUG quick_subs database passes. 2009-02-12 18:10:08,098 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-12 18:10:08,098 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:08,098 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/adcpdb 2009-02-12 18:10:08,099 DEBUG quick_setup running python command "method" 2009-02-12 18:10:08,099 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:08,100 DEBUG quick_subs extracting time range 2009-02-12 18:10:08,100 DEBUG quick_subs start_end_time 2009/02/07 19:44:47 to 2009/02/12 18:08:30 2009-02-12 18:10:08,100 DEBUG quick_subs dd0: 37.822766 dd1: 42.755903 2009-02-12 18:10:08,101 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-12 18:10:08,101 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:08,101 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/adcpdb 2009-02-12 18:10:08,102 DEBUG quick_setup running python command "method" 2009-02-12 18:10:08,102 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-12 18:10:08,102 DEBUG quick_subs extracting time range 2009-02-12 18:10:08,103 DEBUG quick_subs start_end_time 2009/02/07 19:44:47 to 2009/02/12 18:08:30 2009-02-12 18:10:08,103 DEBUG quick_subs dd0: 37.822766 dd1: 42.755903 2009-02-12 18:10:08,103 DEBUG quick_adcp loaded_time_range is 2009/02/07 19:44:47 to 2009/02/12 18:08:30 2009-02-12 18:10:08,104 DEBUG quick_adcp (37.822766 to 42.755903) 2009-02-12 18:10:08,104 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:08,104 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/adcpdb 2009-02-12 18:10:08,105 DEBUG quick_setup running python command "method" 2009-02-12 18:10:08,105 DEBUG quick_subs dbname: a_km output: a_km.cnh time_ranges: all 2009-02-12 18:10:08,106 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2009-02-12 18:10:08,127 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2009-02-12 18:10:08,127 DEBUG quick_run executing commands from /home/data/km0905/proc/os38nb/edit 2009-02-12 18:10:08,127 DEBUG quick_run setup.m exists. not replacing 2009-02-12 18:10:08,128 DEBUG quick_run asetup.m exists. not replacing 2009-02-12 18:10:08,128 DEBUG quick_run aflagit_setup.m exists. not replacing 2009-02-12 18:10:08,128 DEBUG quick_run ------------ step 4: run setflags ------------- 2009-02-12 18:10:08,128 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:08,129 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/edit 2009-02-12 18:10:08,129 DEBUG quick_setup running python command "method" 2009-02-12 18:10:08,129 DEBUG quick_subs dbname: ../adcpdb/a_km pg_min: 50 set_range_bit time_ranges: all 2009-02-12 18:10:08,129 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-02-12 18:10:08,161 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2009-02-12 18:10:08,161 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:08,161 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/nav 2009-02-12 18:10:08,161 DEBUG quick_setup running python command "method" 2009-02-12 18:10:08,164 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2009-02-12 18:10:08,164 DEBUG quick_run hcorr_inst is posmv 2009-02-12 18:10:08,164 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2009-02-12 18:10:08,165 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:08,165 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/cal/rotate 2009-02-12 18:10:08,165 DEBUG quick_setup running python command "method" 2009-02-12 18:10:08,165 DEBUG quick_subs dbname: ../../adcpdb/a_km output: scn.hdg step_size= 1 year_base= 2009 time_ranges: all 2009-02-12 18:10:08,165 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2009-02-12 18:10:08,185 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:08,185 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/cal/rotate 2009-02-12 18:10:08,185 DEBUG quick_setup running python command "method" 2009-02-12 18:10:08,490 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') hcorfile = 'ens_hcorr.asc'; proc_yearbase = 2009; cruiseid = 'km0905'; if exist(hcorfile) plot_hcorstats('comment', cruiseid,... 'proc_yearbase', proc_yearbase,... 'plot_ddrange', 1,... 'plottype','fancy',... 'hcorfile', hcorfile,... 'gps_attname', 'posmv',... 'cruiseid', cruiseid,... 'outfilebase', 'hcorr'); end 2009-02-12 18:10:10,422 DEBUG quick_run ------------ step 7: rotate ------------- 2009-02-12 18:10:10,422 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:10,422 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/cal/rotate 2009-02-12 18:10:10,422 DEBUG quick_setup running python command "method" 2009-02-12 18:10:10,441 DEBUG quick_subs last rotated time from log file: 2009/02/12 17:38:19 2009-02-12 18:10:10,441 DEBUG quick_subs time range of currently loaded data: 2009/02/07 19:44:47 to 2009/02/12 18:08:30 2009-02-12 18:10:10,441 DEBUG quick_subs (37.822766 to 42.755903) 2009-02-12 18:10:10,442 DEBUG quick_setup cal/rotate/rotate.tmp exists 2009-02-12 18:10:10,442 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:10,442 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/cal/rotate 2009-02-12 18:10:10,442 DEBUG quick_setup running python command "method" 2009-02-12 18:10:10,443 DEBUG quick_subs DB_NAME: ../../adcpdb/a_km LOG_FILE: rotate.log TIME_RANGE: 2009/02/12 11:40:56 to 2009/02/12 18:09:06 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2009 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2009-02-12 18:10:10,443 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2009-02-12 18:10:10,449 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-02-12 18:10:10,449 DEBUG quick_setup nav/as_nav.tmp exists 2009-02-12 18:10:10,450 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:10,450 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/nav 2009-02-12 18:10:10,450 DEBUG quick_setup running python command "method" 2009-02-12 18:10:10,450 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/02/07 19:44:47 to 2009/02/12 18:08:30 /* the whole time range */ 2009-02-12 18:10:10,451 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-02-12 18:10:10,494 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-02-12 18:10:10,494 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:10,495 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/nav 2009-02-12 18:10:10,495 DEBUG quick_setup running python command "method" 2009-02-12 18:10:10,495 DEBUG quick_subs fix_file_type: simple reference_file: a_km.nav fix_file: a_km.gps output: a_km.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-02-12 18:10:10,495 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-02-12 18:10:10,525 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-02-12 18:10:10,525 DEBUG quick_setup nav/smoothr.tmp exists 2009-02-12 18:10:10,525 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:10,525 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/nav 2009-02-12 18:10:10,526 DEBUG quick_setup running python command "method" 2009-02-12 18:10:10,526 DEBUG quick_subs reference_file: a_km.nav refabs_output: a_km.ref output: a_km.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-02-12 18:10:10,526 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-02-12 18:10:10,665 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:10,665 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/nav 2009-02-12 18:10:10,665 DEBUG quick_setup running python command "method" 2009-02-12 18:10:10,666 DEBUG call_matlab --> clear all 2009-02-12 18:10:10,701 DEBUG call_matlab <-- >> 2009-02-12 18:10:10,701 DEBUG call_matlab --> close all 2009-02-12 18:10:10,789 DEBUG call_matlab <-- >> 2009-02-12 18:10:10,789 DEBUG call_matlab --> cd /home/data/km0905/proc/os38nb/nav 2009-02-12 18:10:10,792 DEBUG call_matlab <-- >> 2009-02-12 18:10:10,792 DEBUG call_matlab --> refsm 2009-02-12 18:10:11,744 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_km opened Searching CODAS database ==> ../adcpdb/a_km for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 1390 profiles, 20 bins INFO: database closed loading getmat output >> 2009-02-12 18:10:11,745 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-02-12 18:10:11,745 DEBUG quick_setup nav/putnav.tmp exists 2009-02-12 18:10:11,745 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:11,745 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/nav 2009-02-12 18:10:11,746 DEBUG quick_setup running python command "method" 2009-02-12 18:10:11,746 DEBUG quick_subs dbname: ../adcpdb/a_km position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-02-12 18:10:11,746 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-02-12 18:10:11,807 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-02-12 18:10:11,807 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:11,808 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/nav 2009-02-12 18:10:11,808 DEBUG quick_setup running python command "method" 2009-02-12 18:10:11,811 DEBUG quick_subs Created callrtmp.m 2009-02-12 18:10:11,811 DEBUG call_matlab --> clear all 2009-02-12 18:10:11,823 DEBUG call_matlab <-- >> 2009-02-12 18:10:11,823 DEBUG call_matlab --> close all 2009-02-12 18:10:11,909 DEBUG call_matlab <-- >> 2009-02-12 18:10:11,909 DEBUG call_matlab --> cd /home/data/km0905/proc/os38nb/nav 2009-02-12 18:10:11,912 DEBUG call_matlab <-- >> 2009-02-12 18:10:11,913 DEBUG call_matlab --> callrtmp_tmp 2009-02-12 18:10:13,701 DEBUG call_matlab <-- cruise = km0905 cruise = km0905 cruise = km0905 No data available. >> 2009-02-12 18:10:13,702 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2009-02-12 18:10:13,702 DEBUG quick_run find profile flags ------------ *** ------------- 2009-02-12 18:10:13,702 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:13,702 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/edit 2009-02-12 18:10:13,702 DEBUG quick_setup running python command "method" 2009-02-12 18:10:15,194 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2009-02-12 18:10:15,194 DEBUG quick_run starting in: /home/data/km0905/proc/os38nb 2009-02-12 18:10:15,194 DEBUG quick_run executing commands from: edit 2009-02-12 18:10:15,197 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_km abadprf_tmp.asc 2009-02-12 18:10:15,202 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_km abadbin_tmp.asc 2009-02-12 18:10:15,210 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_km 2009-02-12 18:10:15,215 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-02-12 18:10:15,243 DEBUG quick_run changing directories back to /home/data/km0905/proc/os38nb 2009-02-12 18:10:15,243 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2009-02-12 18:10:15,244 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-02-12 18:10:15,244 DEBUG quick_setup nav/as_nav.tmp exists 2009-02-12 18:10:15,244 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:15,244 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/nav 2009-02-12 18:10:15,245 DEBUG quick_setup running python command "method" 2009-02-12 18:10:15,245 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/02/07 19:44:47 to 2009/02/12 18:08:30 /* the whole time range */ 2009-02-12 18:10:15,245 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-02-12 18:10:15,291 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-02-12 18:10:15,291 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:15,292 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/nav 2009-02-12 18:10:15,292 DEBUG quick_setup running python command "method" 2009-02-12 18:10:15,292 DEBUG quick_subs fix_file_type: simple reference_file: a_km.nav fix_file: a_km.gps output: a_km.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 10 2009-02-12 18:10:15,292 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-02-12 18:10:15,401 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-02-12 18:10:15,402 DEBUG quick_setup nav/smoothr.tmp exists 2009-02-12 18:10:15,402 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:15,402 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/nav 2009-02-12 18:10:15,403 DEBUG quick_setup running python command "method" 2009-02-12 18:10:15,403 DEBUG quick_subs reference_file: a_km.nav refabs_output: a_km.ref output: a_km.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 300 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-02-12 18:10:15,403 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-02-12 18:10:15,540 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:15,541 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/nav 2009-02-12 18:10:15,541 DEBUG quick_setup running python command "method" 2009-02-12 18:10:15,541 DEBUG call_matlab --> clear all 2009-02-12 18:10:15,553 DEBUG call_matlab <-- >> 2009-02-12 18:10:15,554 DEBUG call_matlab --> close all 2009-02-12 18:10:15,615 DEBUG call_matlab <-- >> 2009-02-12 18:10:15,615 DEBUG call_matlab --> cd /home/data/km0905/proc/os38nb/nav 2009-02-12 18:10:15,620 DEBUG call_matlab <-- >> 2009-02-12 18:10:15,620 DEBUG call_matlab --> refsm 2009-02-12 18:10:16,390 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_km opened Searching CODAS database ==> ../adcpdb/a_km for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 1390 profiles, 20 bins INFO: database closed loading getmat output >> 2009-02-12 18:10:16,391 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-02-12 18:10:16,391 DEBUG quick_setup nav/putnav.tmp exists 2009-02-12 18:10:16,391 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:16,391 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/nav 2009-02-12 18:10:16,391 DEBUG quick_setup running python command "method" 2009-02-12 18:10:16,392 DEBUG quick_subs dbname: ../adcpdb/a_km position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-02-12 18:10:16,392 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-02-12 18:10:16,446 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-02-12 18:10:16,446 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:16,447 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/nav 2009-02-12 18:10:16,447 DEBUG quick_setup running python command "method" 2009-02-12 18:10:16,448 DEBUG quick_subs Created callrtmp.m 2009-02-12 18:10:16,449 DEBUG call_matlab --> clear all 2009-02-12 18:10:16,458 DEBUG call_matlab <-- >> 2009-02-12 18:10:16,459 DEBUG call_matlab --> close all 2009-02-12 18:10:16,547 DEBUG call_matlab <-- >> 2009-02-12 18:10:16,547 DEBUG call_matlab --> cd /home/data/km0905/proc/os38nb/nav 2009-02-12 18:10:16,551 DEBUG call_matlab <-- >> 2009-02-12 18:10:16,551 DEBUG call_matlab --> callrtmp_tmp 2009-02-12 18:10:18,424 DEBUG call_matlab <-- cruise = km0905 cruise = km0905 cruise = km0905 No data available. >> 2009-02-12 18:10:18,424 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2009-02-12 18:10:18,424 DEBUG quick_setup edit/lst_temp.tmp exists 2009-02-12 18:10:18,424 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:18,425 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/edit 2009-02-12 18:10:18,425 DEBUG quick_setup running python command "method" 2009-02-12 18:10:18,425 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km.tem step_size= 1 year_base= 2009 time_ranges: all 2009-02-12 18:10:18,425 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2009-02-12 18:10:18,448 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:18,448 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/edit 2009-02-12 18:10:18,448 DEBUG quick_setup running python command "method" 2009-02-12 18:10:19,436 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2009-02-12 18:10:19,436 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2009-02-12 18:10:19,436 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:19,436 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/cal/botmtrk 2009-02-12 18:10:19,437 DEBUG quick_setup running python command "method" 2009-02-12 18:10:19,437 DEBUG quick_subs dbname: ../../adcpdb/a_km output: a_km.btm step_size= 1 year_base= 2009 time_ranges: 2009/02/07 19:44:47 to 2009/02/12 18:08:30 /* whole time range */ 2009-02-12 18:10:19,437 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2009-02-12 18:10:19,449 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2009-02-12 18:10:19,449 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:19,449 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/cal/botmtrk 2009-02-12 18:10:19,450 DEBUG quick_setup running python command "method" 2009-02-12 18:10:19,450 DEBUG quick_subs fix_file_type: simple reference_file: a_km.btm fix_file: ../../nav/a_km.gps output: a_km.ref year_base= 2009 ensemble_length= 300 gap_tolerance= 60 2009-02-12 18:10:19,450 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2009-02-12 18:10:19,455 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:19,455 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/cal/botmtrk 2009-02-12 18:10:19,455 DEBUG quick_setup running python command "method" 2009-02-12 18:10:19,455 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') [a, ph, gd_mask, d] = ... btcaluv('a_km.ref','a_km.btm',... 'ADCP km0905 step size 1 ', 1); 2009-02-12 18:10:19,635 DEBUG quick_setup nav/as_nav.tmp exists 2009-02-12 18:10:20,172 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:20,172 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/nav 2009-02-12 18:10:20,172 DEBUG quick_setup running python command "method" 2009-02-12 18:10:20,172 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/02/07 19:44:47 to 2009/02/12 18:08:30 /* the whole time range */ 2009-02-12 18:10:20,173 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-02-12 18:10:20,216 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2009-02-12 18:10:20,218 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:20,218 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/cal/watertrk 2009-02-12 18:10:20,218 DEBUG quick_setup running python command "method" 2009-02-12 18:10:20,219 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_km.gps reference_file: ../../nav/a_km.nav output_file: a_km_7.cal year_base= 2009 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2009-02-12 18:10:20,219 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2009-02-12 18:10:20,233 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:20,234 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/cal/watertrk 2009-02-12 18:10:20,234 DEBUG quick_setup running python command "method" 2009-02-12 18:10:20,234 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') adcpcal('a_km_7.cal', 'ADCP km0905 7ens') 2009-02-12 18:10:20,234 DEBUG call_matlab --> clear all 2009-02-12 18:10:20,240 DEBUG call_matlab <-- >> 2009-02-12 18:10:20,240 DEBUG call_matlab --> close all 2009-02-12 18:10:20,302 DEBUG call_matlab <-- >> 2009-02-12 18:10:20,302 DEBUG call_matlab --> cd /home/data/km0905/proc/os38nb/cal/watertrk 2009-02-12 18:10:20,305 DEBUG call_matlab <-- >> 2009-02-12 18:10:20,306 DEBUG call_matlab --> calladcpcal_tmp 2009-02-12 18:10:21,631 DEBUG call_matlab <-- figure saved as cal1.ps figure saved as cal2.ps ans = 40 ans = j_ph: 11 j_amp: 10 j_t: 2 j_du: 5 j_dv: 6 j_dt: 9 j_mvar: 8 j_var: 7 calr: [34x11 double] igood: [31x1 double] >> 2009-02-12 18:10:21,631 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2009-02-12 18:10:21,631 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:21,631 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/vector 2009-02-12 18:10:21,632 DEBUG quick_setup running python command "method" 2009-02-12 18:10:21,632 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_km.tmp 2009-02-12 18:10:21,643 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:21,644 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/vector 2009-02-12 18:10:21,644 DEBUG quick_setup running python command "method" 2009-02-12 18:10:21,645 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2009-02-12 18:10:21,709 DEBUG quick_asect done making vector matfiles 2009-02-12 18:10:21,710 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:21,710 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/contour 2009-02-12 18:10:21,710 DEBUG quick_setup running python command "method" 2009-02-12 18:10:21,711 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_km.tmp 2009-02-12 18:10:21,720 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:21,720 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/contour 2009-02-12 18:10:21,721 DEBUG quick_setup running python command "method" 2009-02-12 18:10:21,721 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2009-02-12 18:10:21,815 DEBUG quick_setup starting in /home/data/km0905/proc/os38nb 2009-02-12 18:10:21,816 DEBUG quick_setup executing commands from /home/data/km0905/proc/os38nb/contour 2009-02-12 18:10:21,817 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_km 2009-02-12 18:10:22,089 DEBUG quick_asect done running getmat with "allbins" 2009-02-12 18:10:22,090 INFO root copying NOFIG to /home/adcp/www/figures/os38nb_hcorr_plot.png 2009-02-12 18:10:22,091 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/os38nb_hcorr_plot_thumb.png 2009-02-12 18:10:22,091 DEBUG root matfile is contour/contour_uv.mat 2009-02-12 18:10:22,095 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/os38nb_cont_uv.mat 2009-02-12 18:10:22,096 DEBUG root matfile is vector/vector_uv.mat 2009-02-12 18:10:22,096 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/os38nb_vect_uv.mat 2009-02-12 18:10:22,097 DEBUG root matfile is contour/contour_xy.mat 2009-02-12 18:10:22,097 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/os38nb_cont_xy.mat 2009-02-12 18:10:22,098 DEBUG root matfile is vector/vector_xy.mat 2009-02-12 18:10:22,098 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/os38nb_vect_xy.mat 2009-02-12 18:10:22,098 DEBUG root about to copy file edit/a_km.tem to /home/adcp/www/data/os38nb_temp.asc 2009-02-12 18:10:22,099 INFO root copying edit/a_km.tem to /home/adcp/www/data/os38nb_temp.asc 2009-02-12 18:10:22,100 INFO root Ending quick_adcp.py 2009-02-12 18:10:22,204 DEBUG quick_setup killed matlab engine