2009-02-04 19:34:26,328 DEBUG root about to write control file parameters to --yearbase 2009 --pingtype bb --cfgbase km0903 --cruisename km0903 --instclass wh --instname wh300 --dbname a_km --datatype uhdas --datadir /home/data/km0903/raw/wh300 --cfgpath /home/data/km0903/proc/wh300/config --ens_len 120 --ping_headcorr --hcorr_inst posmv --use_topo4edit ## using jitter defaults ## not using matplotlib --delblks 1 --skip_avg --find_pflags --hidedisplay --top_plotbin 1 --quiet --auto --acc_heading_cutoff 0.018000 2009-02-04 19:34:26,331 DEBUG quick_adcp progdir = /home/currents/programs 2009-02-04 19:34:26,331 DEBUG quick_adcp binos = lnx 2009-02-04 19:34:26,332 INFO quick_setup NOTE: proc_yearbase defaulting to yearbase. specify if different 2009-02-04 19:34:26,332 DEBUG quick_setup yearbase is 2009, proc_yearbase is 2009 2009-02-04 19:34:26,332 DEBUG quick_setup processing data logged with uhdas: 2009-02-04 19:34:26,332 DEBUG quick_setup datatype is uhdas 2009-02-04 19:34:26,332 DEBUG quick_setup pingtype is bb 2009-02-04 19:34:26,333 DEBUG quick_setup instclass is wh 2009-02-04 19:34:26,333 DEBUG quick_setup no post-processing heading correction will be used 2009-02-04 19:34:26,333 DEBUG quick_setup transducer depth set in *_cfg.m file 2009-02-04 19:34:26,333 DEBUG quick_subs matcfgstr is: % begin "matcfgstr" string, created by quick_adcp.py instclass = wh; instname = 'wh300'; pingtype = 'bb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'km0903',... 'cfgpath' , '/home/data/km0903/proc/wh300/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py 2009-02-04 19:34:26,333 DEBUG quick_setup ------- starting Matlab engine ------- 2009-02-04 19:34:26,333 DEBUG quick_setup ['/home/currents/programs/matlab'] 2009-02-04 19:34:26,336 DEBUG call_matlab starting to wait for initial prompt 2009-02-04 19:34:27,253 DEBUG call_matlab received initial prompt 2009-02-04 19:34:27,468 DEBUG quick_adcp cwd is /home/data/km0903/proc/wh300 about to run these steps:editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-02-04 19:34:27,468 DEBUG quick_adcp original fix file is a_km.gps 2009-02-04 19:34:27,468 DEBUG quick_adcp smoothed nav file is refsm.sm 2009-02-04 19:34:27,469 DEBUG quick_asect extracting matlab files for wh300, bb pings 2009-02-04 19:34:27,591 DEBUG quick_subs found 61 files using wildcard expansion from "/home/data/km0903/raw/wh300/*.raw" 2009-02-04 19:34:27,591 DEBUG quick_adcp starting with data files (as seen from scan/ or load/ directory): /home/data/km0903/raw/wh300/km2009_029_65010.raw /home/data/km0903/raw/wh300/km2009_029_72000.raw /home/data/km0903/raw/wh300/km2009_029_79200.raw /home/data/km0903/raw/wh300/km2009_030_00000.raw /home/data/km0903/raw/wh300/km2009_030_07200.raw /home/data/km0903/raw/wh300/km2009_030_14400.raw /home/data/km0903/raw/wh300/km2009_030_21600.raw /home/data/km0903/raw/wh300/km2009_030_28800.raw /home/data/km0903/raw/wh300/km2009_030_36000.raw /home/data/km0903/raw/wh300/km2009_030_43200.raw /home/data/km0903/raw/wh300/km2009_030_50400.raw /home/data/km0903/raw/wh300/km2009_030_57600.raw /home/data/km0903/raw/wh300/km2009_030_64800.raw /home/data/km0903/raw/wh300/km2009_030_72000.raw /home/data/km0903/raw/wh300/km2009_030_79200.raw /home/data/km0903/raw/wh300/km2009_031_00000.raw /home/data/km0903/raw/wh300/km2009_031_07200.raw /home/data/km0903/raw/wh300/km2009_031_14400.raw /home/data/km0903/raw/wh300/km2009_031_21600.raw /home/data/km0903/raw/wh300/km2009_031_28800.raw /home/data/km0903/raw/wh300/km2009_031_36000.raw /home/data/km0903/raw/wh300/km2009_031_43200.raw /home/data/km0903/raw/wh300/km2009_031_50400.raw /home/data/km0903/raw/wh300/km2009_031_57600.raw /home/data/km0903/raw/wh300/km2009_031_64800.raw /home/data/km0903/raw/wh300/km2009_031_72000.raw /home/data/km0903/raw/wh300/km2009_031_79200.raw /home/data/km0903/raw/wh300/km2009_032_00000.raw /home/data/km0903/raw/wh300/km2009_032_07200.raw /home/data/km0903/raw/wh300/km2009_032_14400.raw /home/data/km0903/raw/wh300/km2009_032_21600.raw /home/data/km0903/raw/wh300/km2009_032_28800.raw /home/data/km0903/raw/wh300/km2009_032_36000.raw /home/data/km0903/raw/wh300/km2009_032_43200.raw /home/data/km0903/raw/wh300/km2009_032_50400.raw /home/data/km0903/raw/wh300/km2009_032_57600.raw /home/data/km0903/raw/wh300/km2009_032_64800.raw /home/data/km0903/raw/wh300/km2009_032_72000.raw /home/data/km0903/raw/wh300/km2009_032_79200.raw /home/data/km0903/raw/wh300/km2009_033_00000.raw /home/data/km0903/raw/wh300/km2009_033_07200.raw /home/data/km0903/raw/wh300/km2009_033_14400.raw /home/data/km0903/raw/wh300/km2009_033_21600.raw /home/data/km0903/raw/wh300/km2009_033_28800.raw /home/data/km0903/raw/wh300/km2009_033_36000.raw /home/data/km0903/raw/wh300/km2009_033_43200.raw /home/data/km0903/raw/wh300/km2009_033_50400.raw /home/data/km0903/raw/wh300/km2009_033_57600.raw /home/data/km0903/raw/wh300/km2009_033_64800.raw /home/data/km0903/raw/wh300/km2009_033_72000.raw /home/data/km0903/raw/wh300/km2009_033_79200.raw /home/data/km0903/raw/wh300/km2009_034_00000.raw /home/data/km0903/raw/wh300/km2009_034_07200.raw /home/data/km0903/raw/wh300/km2009_034_14400.raw /home/data/km0903/raw/wh300/km2009_034_21600.raw /home/data/km0903/raw/wh300/km2009_034_28800.raw /home/data/km0903/raw/wh300/km2009_034_36000.raw /home/data/km0903/raw/wh300/km2009_034_43200.raw /home/data/km0903/raw/wh300/km2009_034_50400.raw /home/data/km0903/raw/wh300/km2009_034_57600.raw /home/data/km0903/raw/wh300/km2009_034_64800.raw 2009-02-04 19:34:27,592 DEBUG quick_adcp LASTFILES invoked. using only 61 files from end of filelist 2009-02-04 19:34:27,592 DEBUG quick_adcp using delblks = 1 2009-02-04 19:34:27,592 DEBUG quick_adcp using data files (as seen from scan/ or load/ directory): /home/data/km0903/raw/wh300/km2009_029_65010.raw /home/data/km0903/raw/wh300/km2009_029_72000.raw /home/data/km0903/raw/wh300/km2009_029_79200.raw /home/data/km0903/raw/wh300/km2009_030_00000.raw /home/data/km0903/raw/wh300/km2009_030_07200.raw /home/data/km0903/raw/wh300/km2009_030_14400.raw /home/data/km0903/raw/wh300/km2009_030_21600.raw /home/data/km0903/raw/wh300/km2009_030_28800.raw /home/data/km0903/raw/wh300/km2009_030_36000.raw /home/data/km0903/raw/wh300/km2009_030_43200.raw /home/data/km0903/raw/wh300/km2009_030_50400.raw /home/data/km0903/raw/wh300/km2009_030_57600.raw /home/data/km0903/raw/wh300/km2009_030_64800.raw /home/data/km0903/raw/wh300/km2009_030_72000.raw /home/data/km0903/raw/wh300/km2009_030_79200.raw /home/data/km0903/raw/wh300/km2009_031_00000.raw /home/data/km0903/raw/wh300/km2009_031_07200.raw /home/data/km0903/raw/wh300/km2009_031_14400.raw /home/data/km0903/raw/wh300/km2009_031_21600.raw /home/data/km0903/raw/wh300/km2009_031_28800.raw /home/data/km0903/raw/wh300/km2009_031_36000.raw /home/data/km0903/raw/wh300/km2009_031_43200.raw /home/data/km0903/raw/wh300/km2009_031_50400.raw /home/data/km0903/raw/wh300/km2009_031_57600.raw /home/data/km0903/raw/wh300/km2009_031_64800.raw /home/data/km0903/raw/wh300/km2009_031_72000.raw /home/data/km0903/raw/wh300/km2009_031_79200.raw /home/data/km0903/raw/wh300/km2009_032_00000.raw /home/data/km0903/raw/wh300/km2009_032_07200.raw /home/data/km0903/raw/wh300/km2009_032_14400.raw /home/data/km0903/raw/wh300/km2009_032_21600.raw /home/data/km0903/raw/wh300/km2009_032_28800.raw /home/data/km0903/raw/wh300/km2009_032_36000.raw /home/data/km0903/raw/wh300/km2009_032_43200.raw /home/data/km0903/raw/wh300/km2009_032_50400.raw /home/data/km0903/raw/wh300/km2009_032_57600.raw /home/data/km0903/raw/wh300/km2009_032_64800.raw /home/data/km0903/raw/wh300/km2009_032_72000.raw /home/data/km0903/raw/wh300/km2009_032_79200.raw /home/data/km0903/raw/wh300/km2009_033_00000.raw /home/data/km0903/raw/wh300/km2009_033_07200.raw /home/data/km0903/raw/wh300/km2009_033_14400.raw /home/data/km0903/raw/wh300/km2009_033_21600.raw /home/data/km0903/raw/wh300/km2009_033_28800.raw /home/data/km0903/raw/wh300/km2009_033_36000.raw /home/data/km0903/raw/wh300/km2009_033_43200.raw /home/data/km0903/raw/wh300/km2009_033_50400.raw /home/data/km0903/raw/wh300/km2009_033_57600.raw /home/data/km0903/raw/wh300/km2009_033_64800.raw /home/data/km0903/raw/wh300/km2009_033_72000.raw /home/data/km0903/raw/wh300/km2009_033_79200.raw /home/data/km0903/raw/wh300/km2009_034_00000.raw /home/data/km0903/raw/wh300/km2009_034_07200.raw /home/data/km0903/raw/wh300/km2009_034_14400.raw /home/data/km0903/raw/wh300/km2009_034_21600.raw /home/data/km0903/raw/wh300/km2009_034_28800.raw /home/data/km0903/raw/wh300/km2009_034_36000.raw /home/data/km0903/raw/wh300/km2009_034_43200.raw /home/data/km0903/raw/wh300/km2009_034_50400.raw /home/data/km0903/raw/wh300/km2009_034_57600.raw /home/data/km0903/raw/wh300/km2009_034_64800.raw 2009-02-04 19:34:27,594 DEBUG quick_adcp Wed Feb 4 19:34:27 2009 running quick_adcp.py as follows: --cntfile /home/data/km0903/proc/wh300/wh300_qpy.cnt ----- adcpsect variables ------ afilebase a_km cbasename contour dbname a_km dbpath ../adcpdb deeper_boundaries [30, 50, 70, 90, 110, 130, 150] firstdepth 15 gridnum 40 increment 4 loaded_time_range all numbins 128 outdir . pgmin 50 prefix allbins_ proc_yearbase 2009 rl_endbin 20 rl_startbin 2 ss_string separate timegrid 60 vbasename vector ----- quick_adcp.py variables and current values ------ M acc_heading_cutoff 0.018 adjust_time 1 afilebase a_km allow_reload True auto True bindir /home/currents/programs/codas3/bin/lnx binos lnx btrk_step 1 cfgbase km0903 cfgpath /home/data/km0903/proc/wh300/config cntfile /home/data/km0903/proc/wh300/wh300_qpy.cnt commands None cruisename km0903 data_def vmadcp.def datadir /home/data/km0903/raw/wh300 datafile_glob *.raw datatype uhdas dbname a_km dday_bailout None debug False delblks 1 diarystr %% no diary written %% displaystr set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') ducer_depth 0 editcfg_file override_editcfg enddday_file None ens_halign None ens_len 120 ensgyrorbin False expert None filelist ['/home/data/km0903/raw/wh300/km2009_029_65010.raw', '/home/data/km0903/raw/wh300/km2009_029_72000.raw', '/home/data/km0903/raw/wh300/km2009_029_79200.raw', '/home/data/km0903/raw/wh300/km2009_030_00000.raw', '/home/data/km0903/raw/wh300/km2009_030_07200.raw', '/home/data/km0903/raw/wh300/km2009_030_14400.raw', '/home/data/km0903/raw/wh300/km2009_030_21600.raw', '/home/data/km0903/raw/wh300/km2009_030_28800.raw', '/home/data/km0903/raw/wh300/km2009_030_36000.raw', '/home/data/km0903/raw/wh300/km2009_030_43200.raw', '/home/data/km0903/raw/wh300/km2009_030_50400.raw', '/home/data/km0903/raw/wh300/km2009_030_57600.raw', '/home/data/km0903/raw/wh300/km2009_030_64800.raw', '/home/data/km0903/raw/wh300/km2009_030_72000.raw', '/home/data/km0903/raw/wh300/km2009_030_79200.raw', '/home/data/km0903/raw/wh300/km2009_031_00000.raw', '/home/data/km0903/raw/wh300/km2009_031_07200.raw', '/home/data/km0903/raw/wh300/km2009_031_14400.raw', '/home/data/km0903/raw/wh300/km2009_031_21600.raw', '/home/data/km0903/raw/wh300/km2009_031_28800.raw', '/home/data/km0903/raw/wh300/km2009_031_36000.raw', '/home/data/km0903/raw/wh300/km2009_031_43200.raw', '/home/data/km0903/raw/wh300/km2009_031_50400.raw', '/home/data/km0903/raw/wh300/km2009_031_57600.raw', '/home/data/km0903/raw/wh300/km2009_031_64800.raw', '/home/data/km0903/raw/wh300/km2009_031_72000.raw', '/home/data/km0903/raw/wh300/km2009_031_79200.raw', '/home/data/km0903/raw/wh300/km2009_032_00000.raw', '/home/data/km0903/raw/wh300/km2009_032_07200.raw', '/home/data/km0903/raw/wh300/km2009_032_14400.raw', '/home/data/km0903/raw/wh300/km2009_032_21600.raw', '/home/data/km0903/raw/wh300/km2009_032_28800.raw', '/home/data/km0903/raw/wh300/km2009_032_36000.raw', '/home/data/km0903/raw/wh300/km2009_032_43200.raw', '/home/data/km0903/raw/wh300/km2009_032_50400.raw', '/home/data/km0903/raw/wh300/km2009_032_57600.raw', '/home/data/km0903/raw/wh300/km2009_032_64800.raw', '/home/data/km0903/raw/wh300/km2009_032_72000.raw', '/home/data/km0903/raw/wh300/km2009_032_79200.raw', '/home/data/km0903/raw/wh300/km2009_033_00000.raw', '/home/data/km0903/raw/wh300/km2009_033_07200.raw', '/home/data/km0903/raw/wh300/km2009_033_14400.raw', '/home/data/km0903/raw/wh300/km2009_033_21600.raw', '/home/data/km0903/raw/wh300/km2009_033_28800.raw', '/home/data/km0903/raw/wh300/km2009_033_36000.raw', '/home/data/km0903/raw/wh300/km2009_033_43200.raw', '/home/data/km0903/raw/wh300/km2009_033_50400.raw', '/home/data/km0903/raw/wh300/km2009_033_57600.raw', '/home/data/km0903/raw/wh300/km2009_033_64800.raw', '/home/data/km0903/raw/wh300/km2009_033_72000.raw', '/home/data/km0903/raw/wh300/km2009_033_79200.raw', '/home/data/km0903/raw/wh300/km2009_034_00000.raw', '/home/data/km0903/raw/wh300/km2009_034_07200.raw', '/home/data/km0903/raw/wh300/km2009_034_14400.raw', '/home/data/km0903/raw/wh300/km2009_034_21600.raw', '/home/data/km0903/raw/wh300/km2009_034_28800.raw', '/home/data/km0903/raw/wh300/km2009_034_36000.raw', '/home/data/km0903/raw/wh300/km2009_034_43200.raw', '/home/data/km0903/raw/wh300/km2009_034_50400.raw', '/home/data/km0903/raw/wh300/km2009_034_57600.raw', '/home/data/km0903/raw/wh300/km2009_034_64800.raw'] filter_hwidth 0.0208 find_pflags True firstdepth 15 fixfile a_km.gps hcorr_inst posmv head_func None help False hidedisplay True howto_lta False howto_ping False instclass wh instname wh300 jitter 15 lastfiles False matcfgstr % begin "matcfgstr" string, created by quick_adcp.py instclass = wh; instname = 'wh300'; pingtype = 'bb'; proc_yearbase = 2009; yearbase = 2009; cfg =get_uhdascfg('cfgbase' , 'km0903',... 'cfgpath' , '/home/data/km0903/proc/wh300/config',... 'instclass', instclass,... 'instname' , instname,... 'proc_yearbase', proc_yearbase,... 'yearbase', yearbase,... 'pingtype' , pingtype); gbindirbase = cfg.gbindirbase; allparams = cfg.allparams; % end "matcfgstr" string, created by quick_adcp.py max_BLKprofiles 399 maxrunsecs None min_filter_fraction 0.5 nosave_editcfg 0 num_persistence 24 numbins 128 orig_fixfile a_km.gps overview False pgmin 50 ping_headcorr True pingtype bb post_headcorr False proc_yearbase 2009 procdir wh300 progdir /home/currents/programs quiet True rawstd_cutoff None rl_endbin 20 rl_startbin 2 rotate_amplitude 1 rotate_angle 0 rotate_file None save_editcfg 1 save_lastens 0 scanfilelist ['/home/data/km0903/raw/wh300/km2009_029_65010.raw', '/home/data/km0903/raw/wh300/km2009_029_72000.raw', '/home/data/km0903/raw/wh300/km2009_029_79200.raw', '/home/data/km0903/raw/wh300/km2009_030_00000.raw', '/home/data/km0903/raw/wh300/km2009_030_07200.raw', '/home/data/km0903/raw/wh300/km2009_030_14400.raw', '/home/data/km0903/raw/wh300/km2009_030_21600.raw', '/home/data/km0903/raw/wh300/km2009_030_28800.raw', '/home/data/km0903/raw/wh300/km2009_030_36000.raw', '/home/data/km0903/raw/wh300/km2009_030_43200.raw', '/home/data/km0903/raw/wh300/km2009_030_50400.raw', '/home/data/km0903/raw/wh300/km2009_030_57600.raw', '/home/data/km0903/raw/wh300/km2009_030_64800.raw', '/home/data/km0903/raw/wh300/km2009_030_72000.raw', '/home/data/km0903/raw/wh300/km2009_030_79200.raw', '/home/data/km0903/raw/wh300/km2009_031_00000.raw', '/home/data/km0903/raw/wh300/km2009_031_07200.raw', '/home/data/km0903/raw/wh300/km2009_031_14400.raw', '/home/data/km0903/raw/wh300/km2009_031_21600.raw', '/home/data/km0903/raw/wh300/km2009_031_28800.raw', '/home/data/km0903/raw/wh300/km2009_031_36000.raw', '/home/data/km0903/raw/wh300/km2009_031_43200.raw', '/home/data/km0903/raw/wh300/km2009_031_50400.raw', '/home/data/km0903/raw/wh300/km2009_031_57600.raw', '/home/data/km0903/raw/wh300/km2009_031_64800.raw', '/home/data/km0903/raw/wh300/km2009_031_72000.raw', '/home/data/km0903/raw/wh300/km2009_031_79200.raw', '/home/data/km0903/raw/wh300/km2009_032_00000.raw', '/home/data/km0903/raw/wh300/km2009_032_07200.raw', '/home/data/km0903/raw/wh300/km2009_032_14400.raw', '/home/data/km0903/raw/wh300/km2009_032_21600.raw', '/home/data/km0903/raw/wh300/km2009_032_28800.raw', '/home/data/km0903/raw/wh300/km2009_032_36000.raw', '/home/data/km0903/raw/wh300/km2009_032_43200.raw', '/home/data/km0903/raw/wh300/km2009_032_50400.raw', '/home/data/km0903/raw/wh300/km2009_032_57600.raw', '/home/data/km0903/raw/wh300/km2009_032_64800.raw', '/home/data/km0903/raw/wh300/km2009_032_72000.raw', '/home/data/km0903/raw/wh300/km2009_032_79200.raw', '/home/data/km0903/raw/wh300/km2009_033_00000.raw', '/home/data/km0903/raw/wh300/km2009_033_07200.raw', '/home/data/km0903/raw/wh300/km2009_033_14400.raw', '/home/data/km0903/raw/wh300/km2009_033_21600.raw', '/home/data/km0903/raw/wh300/km2009_033_28800.raw', '/home/data/km0903/raw/wh300/km2009_033_36000.raw', '/home/data/km0903/raw/wh300/km2009_033_43200.raw', '/home/data/km0903/raw/wh300/km2009_033_50400.raw', '/home/data/km0903/raw/wh300/km2009_033_57600.raw', '/home/data/km0903/raw/wh300/km2009_033_64800.raw', '/home/data/km0903/raw/wh300/km2009_033_72000.raw', '/home/data/km0903/raw/wh300/km2009_033_79200.raw', '/home/data/km0903/raw/wh300/km2009_034_00000.raw', '/home/data/km0903/raw/wh300/km2009_034_07200.raw', '/home/data/km0903/raw/wh300/km2009_034_14400.raw', '/home/data/km0903/raw/wh300/km2009_034_21600.raw', '/home/data/km0903/raw/wh300/km2009_034_28800.raw', '/home/data/km0903/raw/wh300/km2009_034_36000.raw', '/home/data/km0903/raw/wh300/km2009_034_43200.raw', '/home/data/km0903/raw/wh300/km2009_034_50400.raw', '/home/data/km0903/raw/wh300/km2009_034_57600.raw', '/home/data/km0903/raw/wh300/km2009_034_64800.raw'] setup_info False skip_avg True smfile refsm.sm steps2rerun time_angle_base ens_hcorr time_angle_file ens_hcorr.ang timeout_secs 86400 tips False tktail False top_plotbin 1 ub_type 1920 update_gbin False use_matplotlib False use_refsm True use_smoothr False use_topo4edit True vardoc False varvals False wtrk_step 7 xducer_dx False xducer_dy False yearbase 2009 configured to run the following steps: editsetup scandata loaddata setflags getnav get_headcorr rotate adcpsect refabs smoothnav putnav refplots find_pflags apply_edit navsteps lst_temp calib matfiles 2009-02-04 19:34:27,594 DEBUG quick_run ------------ step 1: scan data (create .scn file) ------------- 2009-02-04 19:34:27,594 DEBUG quick_run scanning files for time ranges... 2009-02-04 19:34:27,595 DEBUG quick_setup starting in /home/data/km0903/proc/wh300/scan 2009-02-04 19:34:27,595 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/scan 2009-02-04 19:34:27,595 DEBUG quick_setup running python command "method" 2009-02-04 19:34:27,595 DEBUG call_matlab --> clear all 2009-02-04 19:34:27,600 DEBUG call_matlab <-- >> 2009-02-04 19:34:27,600 DEBUG call_matlab --> close all 2009-02-04 19:34:27,661 DEBUG call_matlab <-- >> 2009-02-04 19:34:27,662 DEBUG call_matlab --> cd /home/data/km0903/proc/wh300/scan 2009-02-04 19:34:27,664 DEBUG call_matlab <-- >> 2009-02-04 19:34:27,665 DEBUG call_matlab --> scan_tmp 2009-02-04 19:34:28,512 DEBUG call_matlab <-- getting config files from "/home/data/km0903/proc/wh300/config" running "km0903_cfg.m" running "km0903_proc.m" writing scan info to a_km.scn >> 2009-02-04 19:34:28,513 DEBUG quick_run writing time range from a_km.scn to a_km.tr 2009-02-04 19:34:28,513 DEBUG quick_run getting scan time range 2009-02-04 19:34:28,513 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:28,513 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/scan 2009-02-04 19:34:28,514 DEBUG quick_setup running python command "method" 2009-02-04 19:34:28,514 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-04 19:34:28,515 DEBUG quick_subs extracting time range 2009-02-04 19:34:28,516 DEBUG quick_subs start_end_time 2009/01/30 18:03:31 to 2009/02/04 19:32:43 2009-02-04 19:34:28,517 DEBUG quick_subs dd0: 29.752442 dd1: 34.814387 2009-02-04 19:34:28,517 DEBUG quick_adcp in quick_adcp.py: after scan, about to look for database timesin /home/data/km0903/proc/wh300 2009-02-04 19:34:28,517 DEBUG quick_adcp looking for database with adcpdb/a_km*.blk 2009-02-04 19:34:28,518 DEBUG quick_adcp database found: listing blocks 2009-02-04 19:34:28,518 DEBUG quick_subs removing a_kmdir.blk 2009-02-04 19:34:28,519 DEBUG quick_subs about to run mkblkdir 2009-02-04 19:34:28,519 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-02-04 19:34:28,519 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-02-04 19:34:28,530 DEBUG quick_subs database passes. 2009-02-04 19:34:28,531 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-04 19:34:28,531 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:28,531 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/adcpdb 2009-02-04 19:34:28,531 DEBUG quick_setup running python command "method" 2009-02-04 19:34:28,531 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-04 19:34:28,532 DEBUG quick_subs extracting time range 2009-02-04 19:34:28,533 DEBUG quick_subs start_end_time 2009/01/30 18:05:32 to 2009/02/04 19:02:26 2009-02-04 19:34:28,533 DEBUG quick_subs dd0: 29.753843 dd1: 34.793356 2009-02-04 19:34:28,533 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-04 19:34:28,533 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:28,533 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/adcpdb 2009-02-04 19:34:28,534 DEBUG quick_setup running python command "method" 2009-02-04 19:34:28,534 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-04 19:34:28,534 DEBUG quick_subs extracting time range 2009-02-04 19:34:28,535 DEBUG quick_subs start_end_time 2009/01/30 18:05:32 to 2009/02/04 19:02:26 2009-02-04 19:34:28,535 DEBUG quick_subs dd0: 29.753843 dd1: 34.793356 2009-02-04 19:34:28,535 DEBUG quick_adcp in quick_adcp.py: before load, just looked for database times 2009-02-04 19:34:28,536 DEBUG quick_adcp origdb_time_range is 2009/01/30 18:05:32 to 2009/02/04 19:02:26 2009-02-04 19:34:28,536 DEBUG quick_adcp (29.753843 to 34.793356) 2009-02-04 19:34:28,536 DEBUG quick_run ------------ step 2: load data into codas database ------------- 2009-02-04 19:34:28,537 DEBUG quick_subs getting current (remaining after deletion) database times 2009-02-04 19:34:28,537 DEBUG quick_subs ['adcpdb/a_kmdir.blk', 'adcpdb/a_km017.blk', 'adcpdb/a_km021.blk', 'adcpdb/a_km018.blk', 'adcpdb/a_km003.blk', 'adcpdb/a_km001.blk', 'adcpdb/a_km025.blk', 'adcpdb/a_km019.blk', 'adcpdb/a_km011.blk', 'adcpdb/a_km007.blk', 'adcpdb/a_km009.blk', 'adcpdb/a_km024.blk', 'adcpdb/a_km012.blk', 'adcpdb/a_km008.blk', 'adcpdb/a_km006.blk', 'adcpdb/a_km004.blk', 'adcpdb/a_km020.blk', 'adcpdb/a_km022.blk', 'adcpdb/a_km002.blk', 'adcpdb/a_km010.blk', 'adcpdb/a_km005.blk', 'adcpdb/a_km013.blk', 'adcpdb/a_km016.blk', 'adcpdb/a_km023.blk', 'adcpdb/a_km014.blk', 'adcpdb/a_km015.blk'] 2009-02-04 19:34:28,537 DEBUG quick_subs length is 26 2009-02-04 19:34:28,537 DEBUG quick_subs removing a_kmdir.blk 2009-02-04 19:34:28,538 DEBUG quick_subs about to run mkblkdir 2009-02-04 19:34:28,538 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-02-04 19:34:28,538 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-02-04 19:34:28,549 DEBUG quick_subs database passes. 2009-02-04 19:34:28,549 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-04 19:34:28,549 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:28,549 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/adcpdb 2009-02-04 19:34:28,550 DEBUG quick_setup running python command "method" 2009-02-04 19:34:28,550 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-04 19:34:28,551 DEBUG quick_subs extracting time range 2009-02-04 19:34:28,551 DEBUG quick_subs start_end_time 2009/01/30 18:05:32 to 2009/02/04 19:02:26 2009-02-04 19:34:28,551 DEBUG quick_subs dd0: 29.753843 dd1: 34.793356 2009-02-04 19:34:28,551 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-04 19:34:28,552 DEBUG quick_subs reading time range 2009-02-04 19:34:28,552 DEBUG quick_subs start_end_time 2009/01/30 18:05:32 to 2009/02/04 19:02:26 2009-02-04 19:34:28,552 DEBUG quick_subs dd0: 29.753843 dd1: 34.793356 2009-02-04 19:34:28,553 INFO quick_subs Wed Feb 4 19:34:28 2009 2009-02-04 19:34:28,553 INFO quick_subs checking database time range by listblk 2009-02-04 19:34:28,553 DEBUG quick_subs removing a_kmdir.blk 2009-02-04 19:34:28,554 DEBUG quick_subs about to run mkblkdir 2009-02-04 19:34:28,554 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-02-04 19:34:28,554 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-02-04 19:34:28,565 DEBUG quick_subs database passes. 2009-02-04 19:34:28,565 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-04 19:34:28,565 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:28,565 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/adcpdb 2009-02-04 19:34:28,566 DEBUG quick_setup running python command "method" 2009-02-04 19:34:28,566 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-04 19:34:28,567 DEBUG quick_subs extracting time range 2009-02-04 19:34:28,567 DEBUG quick_subs start_end_time 2009/01/30 18:05:32 to 2009/02/04 19:02:26 2009-02-04 19:34:28,567 DEBUG quick_subs dd0: 29.753843 dd1: 34.793356 2009-02-04 19:34:28,569 INFO quick_subs found line /* 0 n= 146 a_km001.blk */ 2009/01/30 18:05:32 to 2009/01/30 22:55:53 2009-02-04 19:34:28,569 INFO quick_subs found line /* 1 n= 146 a_km002.blk */ 2009/01/30 22:57:54 to 2009/01/31 03:50:15 2009-02-04 19:34:28,570 INFO quick_subs found line /* 2 n= 146 a_km003.blk */ 2009/01/31 03:52:15 to 2009/01/31 08:42:36 2009-02-04 19:34:28,570 INFO quick_subs found line /* 3 n= 146 a_km004.blk */ 2009/01/31 08:44:37 to 2009/01/31 13:34:58 2009-02-04 19:34:28,570 INFO quick_subs found line /* 4 n= 146 a_km005.blk */ 2009/01/31 13:36:58 to 2009/01/31 18:27:19 2009-02-04 19:34:28,570 INFO quick_subs found line /* 5 n= 146 a_km006.blk */ 2009/01/31 18:29:19 to 2009/01/31 23:19:40 2009-02-04 19:34:28,570 INFO quick_subs found line /* 6 n= 146 a_km007.blk */ 2009/01/31 23:21:41 to 2009/02/01 04:12:02 2009-02-04 19:34:28,571 INFO quick_subs found line /* 7 n= 146 a_km008.blk */ 2009/02/01 04:14:02 to 2009/02/01 09:04:24 2009-02-04 19:34:28,571 INFO quick_subs found line /* 8 n= 146 a_km009.blk */ 2009/02/01 09:06:24 to 2009/02/01 13:56:46 2009-02-04 19:34:28,571 INFO quick_subs found line /* 9 n= 146 a_km010.blk */ 2009/02/01 13:58:46 to 2009/02/01 18:49:07 2009-02-04 19:34:28,571 INFO quick_subs found line /* 10 n= 146 a_km011.blk */ 2009/02/01 18:51:07 to 2009/02/01 23:41:28 2009-02-04 19:34:28,571 INFO quick_subs found line /* 11 n= 146 a_km012.blk */ 2009/02/01 23:43:29 to 2009/02/02 04:33:50 2009-02-04 19:34:28,572 INFO quick_subs found line /* 12 n= 146 a_km013.blk */ 2009/02/02 04:35:50 to 2009/02/02 09:26:11 2009-02-04 19:34:28,572 INFO quick_subs found line /* 13 n= 146 a_km014.blk */ 2009/02/02 09:28:11 to 2009/02/02 14:18:32 2009-02-04 19:34:28,572 INFO quick_subs found line /* 14 n= 146 a_km015.blk */ 2009/02/02 14:20:33 to 2009/02/02 19:10:54 2009-02-04 19:34:28,572 INFO quick_subs found line /* 15 n= 146 a_km016.blk */ 2009/02/02 19:12:54 to 2009/02/03 00:03:16 2009-02-04 19:34:28,573 INFO quick_subs found line /* 16 n= 146 a_km017.blk */ 2009/02/03 00:05:16 to 2009/02/03 04:55:38 2009-02-04 19:34:28,573 INFO quick_subs found line /* 17 n= 146 a_km018.blk */ 2009/02/03 04:57:38 to 2009/02/03 09:47:59 2009-02-04 19:34:28,573 INFO quick_subs found line /* 18 n= 146 a_km019.blk */ 2009/02/03 09:49:59 to 2009/02/03 14:40:20 2009-02-04 19:34:28,573 INFO quick_subs found line /* 19 n= 146 a_km020.blk */ 2009/02/03 14:42:20 to 2009/02/03 19:32:42 2009-02-04 19:34:28,573 INFO quick_subs found line /* 20 n= 146 a_km021.blk */ 2009/02/03 19:34:42 to 2009/02/04 00:25:03 2009-02-04 19:34:28,574 INFO quick_subs found line /* 21 n= 146 a_km022.blk */ 2009/02/04 00:27:03 to 2009/02/04 05:17:25 2009-02-04 19:34:28,574 INFO quick_subs found line /* 22 n= 146 a_km023.blk */ 2009/02/04 05:19:25 to 2009/02/04 10:09:47 2009-02-04 19:34:28,574 INFO quick_subs found line /* 23 n= 146 a_km024.blk */ 2009/02/04 10:11:47 to 2009/02/04 15:02:08 2009-02-04 19:34:28,574 INFO quick_subs found line /* 24 n= 120 a_km025.blk */ 2009/02/04 15:04:08 to 2009/02/04 19:02:26 2009-02-04 19:34:28,574 INFO quick_subs scan data start at 29.7524421 2009-02-04 19:34:28,575 INFO quick_subs scan time range: 2009/01/30 18:03:31 to 2009/02/04 19:32:43 2009-02-04 19:34:28,575 INFO quick_subs codasdb ends at 34.7933565 (2009/02/04 19:02:26) 2009-02-04 19:34:28,575 DEBUG quick_subs ... changed dirs, in /home/data/km0903/proc/wh300/adcpdb 2009-02-04 19:34:28,576 DEBUG quick_subs deleting these files: ['a_km025.blk'] 2009-02-04 19:34:28,576 DEBUG quick_subs getting current (remaining after deletion) database times 2009-02-04 19:34:28,577 DEBUG quick_subs ['adcpdb/a_km017.blk', 'adcpdb/a_km021.blk', 'adcpdb/a_km018.blk', 'adcpdb/a_km003.blk', 'adcpdb/a_km001.blk', 'adcpdb/a_km019.blk', 'adcpdb/a_km011.blk', 'adcpdb/a_km007.blk', 'adcpdb/a_km009.blk', 'adcpdb/a_km024.blk', 'adcpdb/a_km012.blk', 'adcpdb/a_km008.blk', 'adcpdb/a_km006.blk', 'adcpdb/a_km004.blk', 'adcpdb/a_km020.blk', 'adcpdb/a_km022.blk', 'adcpdb/a_km002.blk', 'adcpdb/a_km010.blk', 'adcpdb/a_km005.blk', 'adcpdb/a_km013.blk', 'adcpdb/a_km016.blk', 'adcpdb/a_km023.blk', 'adcpdb/a_km014.blk', 'adcpdb/a_km015.blk'] 2009-02-04 19:34:28,577 DEBUG quick_subs length is 24 2009-02-04 19:34:28,577 DEBUG quick_subs about to run mkblkdir 2009-02-04 19:34:28,577 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-02-04 19:34:28,578 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-02-04 19:34:28,588 DEBUG quick_subs database passes. 2009-02-04 19:34:28,589 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-04 19:34:28,589 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:28,589 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/adcpdb 2009-02-04 19:34:28,589 DEBUG quick_setup running python command "method" 2009-02-04 19:34:28,590 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-04 19:34:28,590 DEBUG quick_subs extracting time range 2009-02-04 19:34:28,591 DEBUG quick_subs start_end_time 2009/01/30 18:05:32 to 2009/02/04 15:02:08 2009-02-04 19:34:28,591 DEBUG quick_subs dd0: 29.753843 dd1: 34.626481 2009-02-04 19:34:28,591 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-04 19:34:28,591 DEBUG quick_subs reading time range 2009-02-04 19:34:28,592 DEBUG quick_subs start_end_time 2009/01/30 18:05:32 to 2009/02/04 15:02:08 2009-02-04 19:34:28,592 DEBUG quick_subs dd0: 29.753843 dd1: 34.626481 2009-02-04 19:34:28,592 DEBUG quick_subs codas database currently goes from 2009/01/30 18:05:32 to 2009/02/04 15:02:08 2009-02-04 19:34:28,592 DEBUG quick_subs (29.753843 to 34.626481) 2009-02-04 19:34:28,593 DEBUG quick_subs 001found existing adcpdb blocks: %s 002found existing adcpdb blocks: %s 003found existing adcpdb blocks: %s 004found existing adcpdb blocks: %s 005found existing adcpdb blocks: %s 006found existing adcpdb blocks: %s 007found existing adcpdb blocks: %s 008found existing adcpdb blocks: %s 009found existing adcpdb blocks: %s 010found existing adcpdb blocks: %s 011found existing adcpdb blocks: %s 012found existing adcpdb blocks: %s 013found existing adcpdb blocks: %s 014found existing adcpdb blocks: %s 015found existing adcpdb blocks: %s 016found existing adcpdb blocks: %s 017found existing adcpdb blocks: %s 018found existing adcpdb blocks: %s 019found existing adcpdb blocks: %s 020found existing adcpdb blocks: %s 021found existing adcpdb blocks: %s 022found existing adcpdb blocks: %s 023found existing adcpdb blocks: %s 024 2009-02-04 19:34:28,594 DEBUG quick_subs found existing ens_blk files: 001 002 003 004 005 006 007 008 009 010 011 012 013 014 015 016 017 018 019 020 021 022 023 024 025 2009-02-04 19:34:28,595 DEBUG quick_subs checked: loaded blkstrs: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019', '020', '021', '022', '023', '024'] 2009-02-04 19:34:28,595 DEBUG quick_subs checked: unloaded blkstrs: ['025'] 2009-02-04 19:34:28,595 DEBUG quick_subs first unloaded file is load/ens_blk025.cmd 2009-02-04 19:34:28,614 DEBUG quick_subs data goes from 2009/02/04 15:04:08 to 2009/02/04 19:32:43 2009-02-04 19:34:28,615 DEBUG quick_subs (34.627870 to 34.814387) 2009-02-04 19:34:28,615 DEBUG quick_run using data files (as seen from scan/ or load/ directory): /home/data/km0903/raw/wh300/km2009_029_65010.raw /home/data/km0903/raw/wh300/km2009_029_72000.raw /home/data/km0903/raw/wh300/km2009_029_79200.raw /home/data/km0903/raw/wh300/km2009_030_00000.raw /home/data/km0903/raw/wh300/km2009_030_07200.raw /home/data/km0903/raw/wh300/km2009_030_14400.raw /home/data/km0903/raw/wh300/km2009_030_21600.raw /home/data/km0903/raw/wh300/km2009_030_28800.raw /home/data/km0903/raw/wh300/km2009_030_36000.raw /home/data/km0903/raw/wh300/km2009_030_43200.raw /home/data/km0903/raw/wh300/km2009_030_50400.raw /home/data/km0903/raw/wh300/km2009_030_57600.raw /home/data/km0903/raw/wh300/km2009_030_64800.raw /home/data/km0903/raw/wh300/km2009_030_72000.raw /home/data/km0903/raw/wh300/km2009_030_79200.raw /home/data/km0903/raw/wh300/km2009_031_00000.raw /home/data/km0903/raw/wh300/km2009_031_07200.raw /home/data/km0903/raw/wh300/km2009_031_14400.raw /home/data/km0903/raw/wh300/km2009_031_21600.raw /home/data/km0903/raw/wh300/km2009_031_28800.raw /home/data/km0903/raw/wh300/km2009_031_36000.raw /home/data/km0903/raw/wh300/km2009_031_43200.raw /home/data/km0903/raw/wh300/km2009_031_50400.raw /home/data/km0903/raw/wh300/km2009_031_57600.raw /home/data/km0903/raw/wh300/km2009_031_64800.raw /home/data/km0903/raw/wh300/km2009_031_72000.raw /home/data/km0903/raw/wh300/km2009_031_79200.raw /home/data/km0903/raw/wh300/km2009_032_00000.raw /home/data/km0903/raw/wh300/km2009_032_07200.raw /home/data/km0903/raw/wh300/km2009_032_14400.raw /home/data/km0903/raw/wh300/km2009_032_21600.raw /home/data/km0903/raw/wh300/km2009_032_28800.raw /home/data/km0903/raw/wh300/km2009_032_36000.raw /home/data/km0903/raw/wh300/km2009_032_43200.raw /home/data/km0903/raw/wh300/km2009_032_50400.raw /home/data/km0903/raw/wh300/km2009_032_57600.raw /home/data/km0903/raw/wh300/km2009_032_64800.raw /home/data/km0903/raw/wh300/km2009_032_72000.raw /home/data/km0903/raw/wh300/km2009_032_79200.raw /home/data/km0903/raw/wh300/km2009_033_00000.raw /home/data/km0903/raw/wh300/km2009_033_07200.raw /home/data/km0903/raw/wh300/km2009_033_14400.raw /home/data/km0903/raw/wh300/km2009_033_21600.raw /home/data/km0903/raw/wh300/km2009_033_28800.raw /home/data/km0903/raw/wh300/km2009_033_36000.raw /home/data/km0903/raw/wh300/km2009_033_43200.raw /home/data/km0903/raw/wh300/km2009_033_50400.raw /home/data/km0903/raw/wh300/km2009_033_57600.raw /home/data/km0903/raw/wh300/km2009_033_64800.raw /home/data/km0903/raw/wh300/km2009_033_72000.raw /home/data/km0903/raw/wh300/km2009_033_79200.raw /home/data/km0903/raw/wh300/km2009_034_00000.raw /home/data/km0903/raw/wh300/km2009_034_07200.raw /home/data/km0903/raw/wh300/km2009_034_14400.raw /home/data/km0903/raw/wh300/km2009_034_21600.raw /home/data/km0903/raw/wh300/km2009_034_28800.raw /home/data/km0903/raw/wh300/km2009_034_36000.raw /home/data/km0903/raw/wh300/km2009_034_43200.raw /home/data/km0903/raw/wh300/km2009_034_50400.raw /home/data/km0903/raw/wh300/km2009_034_57600.raw /home/data/km0903/raw/wh300/km2009_034_64800.raw 2009-02-04 19:34:28,615 INFO quick_run Wed Feb 4 19:34:28 2009 2009-02-04 19:34:28,615 INFO quick_run about to load uhdas files 2009-02-04 19:34:28,616 INFO quick_run /home/data/km0903/raw/wh300/km2009_029_65010.raw /home/data/km0903/raw/wh300/km2009_029_72000.raw /home/data/km0903/raw/wh300/km2009_029_79200.raw /home/data/km0903/raw/wh300/km2009_030_00000.raw /home/data/km0903/raw/wh300/km2009_030_07200.raw /home/data/km0903/raw/wh300/km2009_030_14400.raw /home/data/km0903/raw/wh300/km2009_030_21600.raw /home/data/km0903/raw/wh300/km2009_030_28800.raw /home/data/km0903/raw/wh300/km2009_030_36000.raw /home/data/km0903/raw/wh300/km2009_030_43200.raw /home/data/km0903/raw/wh300/km2009_030_50400.raw /home/data/km0903/raw/wh300/km2009_030_57600.raw /home/data/km0903/raw/wh300/km2009_030_64800.raw /home/data/km0903/raw/wh300/km2009_030_72000.raw /home/data/km0903/raw/wh300/km2009_030_79200.raw /home/data/km0903/raw/wh300/km2009_031_00000.raw /home/data/km0903/raw/wh300/km2009_031_07200.raw /home/data/km0903/raw/wh300/km2009_031_14400.raw /home/data/km0903/raw/wh300/km2009_031_21600.raw /home/data/km0903/raw/wh300/km2009_031_28800.raw /home/data/km0903/raw/wh300/km2009_031_36000.raw /home/data/km0903/raw/wh300/km2009_031_43200.raw /home/data/km0903/raw/wh300/km2009_031_50400.raw /home/data/km0903/raw/wh300/km2009_031_57600.raw /home/data/km0903/raw/wh300/km2009_031_64800.raw /home/data/km0903/raw/wh300/km2009_031_72000.raw /home/data/km0903/raw/wh300/km2009_031_79200.raw /home/data/km0903/raw/wh300/km2009_032_00000.raw /home/data/km0903/raw/wh300/km2009_032_07200.raw /home/data/km0903/raw/wh300/km2009_032_14400.raw /home/data/km0903/raw/wh300/km2009_032_21600.raw /home/data/km0903/raw/wh300/km2009_032_28800.raw /home/data/km0903/raw/wh300/km2009_032_36000.raw /home/data/km0903/raw/wh300/km2009_032_43200.raw /home/data/km0903/raw/wh300/km2009_032_50400.raw /home/data/km0903/raw/wh300/km2009_032_57600.raw /home/data/km0903/raw/wh300/km2009_032_64800.raw /home/data/km0903/raw/wh300/km2009_032_72000.raw /home/data/km0903/raw/wh300/km2009_032_79200.raw /home/data/km0903/raw/wh300/km2009_033_00000.raw /home/data/km0903/raw/wh300/km2009_033_07200.raw /home/data/km0903/raw/wh300/km2009_033_14400.raw /home/data/km0903/raw/wh300/km2009_033_21600.raw /home/data/km0903/raw/wh300/km2009_033_28800.raw /home/data/km0903/raw/wh300/km2009_033_36000.raw /home/data/km0903/raw/wh300/km2009_033_43200.raw /home/data/km0903/raw/wh300/km2009_033_50400.raw /home/data/km0903/raw/wh300/km2009_033_57600.raw /home/data/km0903/raw/wh300/km2009_033_64800.raw /home/data/km0903/raw/wh300/km2009_033_72000.raw /home/data/km0903/raw/wh300/km2009_033_79200.raw /home/data/km0903/raw/wh300/km2009_034_00000.raw /home/data/km0903/raw/wh300/km2009_034_07200.raw /home/data/km0903/raw/wh300/km2009_034_14400.raw /home/data/km0903/raw/wh300/km2009_034_21600.raw /home/data/km0903/raw/wh300/km2009_034_28800.raw /home/data/km0903/raw/wh300/km2009_034_36000.raw /home/data/km0903/raw/wh300/km2009_034_43200.raw /home/data/km0903/raw/wh300/km2009_034_50400.raw /home/data/km0903/raw/wh300/km2009_034_57600.raw /home/data/km0903/raw/wh300/km2009_034_64800.raw 2009-02-04 19:34:28,616 DEBUG quick_setup load/ldcodas.tmp exists 2009-02-04 19:34:28,616 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:28,616 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/load 2009-02-04 19:34:28,616 DEBUG quick_setup running python command "method" 2009-02-04 19:34:28,617 DEBUG quick_subs in /home/data/km0903/proc/wh300/load 2009-02-04 19:34:28,617 DEBUG quick_subs found block strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019', '020', '021', '022', '023', '024'] 2009-02-04 19:34:28,618 DEBUG quick_subs found cmd blk strings: ['001', '002', '003', '004', '005', '006', '007', '008', '009', '010', '011', '012', '013', '014', '015', '016', '017', '018', '019', '020', '021', '022', '023', '024', '025'] 2009-02-04 19:34:28,619 DEBUG quick_subs starttime is 2009/02/04 15:04:08 2009-02-04 19:34:28,619 DEBUG quick_subs RESETTING thisload_time_range 2009-02-04 19:34:28,619 DEBUG quick_subs time range of data to be loaded: 2009/02/04 15:04:08 to 2009/02/04 19:32:43 2009-02-04 19:34:28,620 DEBUG quick_subs data startdd 34.627870 data enddd 34.814387 2009-02-04 19:34:28,620 DEBUG quick_subs about to load from these cmd files ['ens_blk025.cmd'] 2009-02-04 19:34:28,620 DEBUG quick_subs DATABASE_NAME: ../adcpdb/a_km DEFINITION_FILE: vmadcp.def LOG_FILE: load.log YEAR_BASE: 2009 cmd_file_list /* use only if specifying cmd paths, not "@" */ END ./ens_blk025.cmd 2009-02-04 19:34:28,620 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/ldcodas ldcodas.tmp 2009-02-04 19:34:28,658 DEBUG quick_subs removing a_kmdir.blk 2009-02-04 19:34:28,659 DEBUG quick_subs about to run mkblkdir 2009-02-04 19:34:28,659 DEBUG quick_subs database still exists; rerunning mkdirblk 2009-02-04 19:34:28,660 DEBUG quick_subs running /home/currents/programs/codas3/bin/lnx/mkblkdir mkblkdir.tmp 2009-02-04 19:34:28,672 DEBUG quick_subs database passes. 2009-02-04 19:34:28,673 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-04 19:34:28,673 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:28,673 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/adcpdb 2009-02-04 19:34:28,673 DEBUG quick_setup running python command "method" 2009-02-04 19:34:28,673 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-04 19:34:28,674 DEBUG quick_subs extracting time range 2009-02-04 19:34:28,675 DEBUG quick_subs start_end_time 2009/01/30 18:05:32 to 2009/02/04 19:32:28 2009-02-04 19:34:28,675 DEBUG quick_subs dd0: 29.753843 dd1: 34.814213 2009-02-04 19:34:28,675 DEBUG quick_subs writing time range from a_km.lst to a_km.tr 2009-02-04 19:34:28,675 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:28,675 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/adcpdb 2009-02-04 19:34:28,676 DEBUG quick_setup running python command "method" 2009-02-04 19:34:28,676 DEBUG quick_subs about to set opts to proc.opts, in get_time_range... 2009-02-04 19:34:28,676 DEBUG quick_subs extracting time range 2009-02-04 19:34:28,677 DEBUG quick_subs start_end_time 2009/01/30 18:05:32 to 2009/02/04 19:32:28 2009-02-04 19:34:28,677 DEBUG quick_subs dd0: 29.753843 dd1: 34.814213 2009-02-04 19:34:28,677 DEBUG quick_adcp loaded_time_range is 2009/01/30 18:05:32 to 2009/02/04 19:32:28 2009-02-04 19:34:28,677 DEBUG quick_adcp (29.753843 to 34.814213) 2009-02-04 19:34:28,678 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:28,678 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/adcpdb 2009-02-04 19:34:28,678 DEBUG quick_setup running python command "method" 2009-02-04 19:34:28,678 DEBUG quick_subs dbname: a_km output: a_km.cnh time_ranges: all 2009-02-04 19:34:28,679 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_conf lst_conf.tmp 2009-02-04 19:34:28,702 DEBUG quick_run ------------ step 3 (create suitable setup files for editing) ------------- 2009-02-04 19:34:28,702 DEBUG quick_run executing commands from /home/data/km0903/proc/wh300/edit 2009-02-04 19:34:28,703 DEBUG quick_run setup.m exists. not replacing 2009-02-04 19:34:28,703 DEBUG quick_run asetup.m exists. not replacing 2009-02-04 19:34:28,703 DEBUG quick_run aflagit_setup.m exists. not replacing 2009-02-04 19:34:28,705 DEBUG quick_run ------------ step 4: run setflags ------------- 2009-02-04 19:34:28,705 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:28,705 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/edit 2009-02-04 19:34:28,706 DEBUG quick_setup running python command "method" 2009-02-04 19:34:28,706 DEBUG quick_subs dbname: ../adcpdb/a_km pg_min: 50 set_range_bit time_ranges: all 2009-02-04 19:34:28,706 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-02-04 19:34:28,766 DEBUG quick_run ------------ step 5: get fixes from load/*.gps2 files ------------- 2009-02-04 19:34:28,766 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:28,766 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/nav 2009-02-04 19:34:28,767 DEBUG quick_setup running python command "method" 2009-02-04 19:34:28,969 DEBUG quick_run ------------ step 6: get heading correction (if applicable) ------------- 2009-02-04 19:34:28,969 DEBUG quick_run hcorr_inst is posmv 2009-02-04 19:34:28,970 DEBUG quick_setup cal/rotate/lst_hdg.tmp exists 2009-02-04 19:34:28,970 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:28,970 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/cal/rotate 2009-02-04 19:34:28,970 DEBUG quick_setup running python command "method" 2009-02-04 19:34:28,971 DEBUG quick_subs dbname: ../../adcpdb/a_km output: scn.hdg step_size= 1 year_base= 2009 time_ranges: all 2009-02-04 19:34:28,971 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_hdg lst_hdg.tmp 2009-02-04 19:34:29,012 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:29,012 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/cal/rotate 2009-02-04 19:34:29,013 DEBUG quick_setup running python command "method" 2009-02-04 19:34:29,383 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') hcorfile = 'ens_hcorr.asc'; proc_yearbase = 2009; cruiseid = 'km0903'; if exist(hcorfile) plot_hcorstats('comment', cruiseid,... 'proc_yearbase', proc_yearbase,... 'plot_ddrange', 1,... 'plottype','fancy',... 'hcorfile', hcorfile,... 'gps_attname', 'posmv',... 'cruiseid', cruiseid,... 'outfilebase', 'hcorr'); end 2009-02-04 19:34:31,545 DEBUG quick_run ------------ step 7: rotate ------------- 2009-02-04 19:34:31,545 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:31,545 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/cal/rotate 2009-02-04 19:34:31,546 DEBUG quick_setup running python command "method" 2009-02-04 19:34:31,565 DEBUG quick_subs last rotated time from log file: 2009/02/04 19:02:45 2009-02-04 19:34:31,565 DEBUG quick_subs time range of currently loaded data: 2009/01/30 18:05:32 to 2009/02/04 19:32:28 2009-02-04 19:34:31,566 DEBUG quick_subs (29.753843 to 34.814213) 2009-02-04 19:34:31,566 DEBUG quick_setup cal/rotate/rotate.tmp exists 2009-02-04 19:34:31,566 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:31,567 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/cal/rotate 2009-02-04 19:34:31,567 DEBUG quick_setup running python command "method" 2009-02-04 19:34:31,567 DEBUG quick_subs DB_NAME: ../../adcpdb/a_km LOG_FILE: rotate.log TIME_RANGE: 2009/02/04 15:04:08 to 2009/02/04 19:32:43 /* only from scanned files */ OPTION_LIST: water_and_bottom_track: year_base= 2009 /* time_angle_file: (NOT USED -- rotation is done in ensembles) */ amplitude= 1 angle_0= 0 end end 2009-02-04 19:34:31,568 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/rotate rotate.tmp 2009-02-04 19:34:31,574 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-02-04 19:34:31,575 DEBUG quick_setup nav/as_nav.tmp exists 2009-02-04 19:34:31,575 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:31,575 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/nav 2009-02-04 19:34:31,575 DEBUG quick_setup running python command "method" 2009-02-04 19:34:31,576 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/01/30 18:05:32 to 2009/02/04 19:32:28 /* the whole time range */ 2009-02-04 19:34:31,576 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-02-04 19:34:31,678 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-02-04 19:34:31,679 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:31,679 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/nav 2009-02-04 19:34:31,679 DEBUG quick_setup running python command "method" 2009-02-04 19:34:31,679 DEBUG quick_subs fix_file_type: simple reference_file: a_km.nav fix_file: a_km.gps output: a_km.ref year_base= 2009 ensemble_length= 120 gap_tolerance= 10 2009-02-04 19:34:31,680 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-02-04 19:34:31,748 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-02-04 19:34:31,749 DEBUG quick_setup nav/smoothr.tmp exists 2009-02-04 19:34:31,749 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:31,749 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/nav 2009-02-04 19:34:31,749 DEBUG quick_setup running python command "method" 2009-02-04 19:34:31,750 DEBUG quick_subs reference_file: a_km.nav refabs_output: a_km.ref output: a_km.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 120 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-02-04 19:34:31,750 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-02-04 19:34:32,120 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:32,121 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/nav 2009-02-04 19:34:32,121 DEBUG quick_setup running python command "method" 2009-02-04 19:34:32,121 DEBUG call_matlab --> clear all 2009-02-04 19:34:32,157 DEBUG call_matlab <-- >> 2009-02-04 19:34:32,157 DEBUG call_matlab --> close all 2009-02-04 19:34:32,245 DEBUG call_matlab <-- >> 2009-02-04 19:34:32,245 DEBUG call_matlab --> cd /home/data/km0903/proc/wh300/nav 2009-02-04 19:34:32,248 DEBUG call_matlab <-- >> 2009-02-04 19:34:32,248 DEBUG call_matlab --> refsm 2009-02-04 19:34:34,420 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_km opened Searching CODAS database ==> ../adcpdb/a_km for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 3639 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 90 percent done... 100 percent done... >> 2009-02-04 19:34:34,421 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-02-04 19:34:34,421 DEBUG quick_setup nav/putnav.tmp exists 2009-02-04 19:34:34,421 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:34,421 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/nav 2009-02-04 19:34:34,422 DEBUG quick_setup running python command "method" 2009-02-04 19:34:34,422 DEBUG quick_subs dbname: ../adcpdb/a_km position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-02-04 19:34:34,422 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-02-04 19:34:34,532 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-02-04 19:34:34,533 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:34,533 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/nav 2009-02-04 19:34:34,533 DEBUG quick_setup running python command "method" 2009-02-04 19:34:34,534 DEBUG quick_subs Created callrtmp.m 2009-02-04 19:34:34,535 DEBUG call_matlab --> clear all 2009-02-04 19:34:34,542 DEBUG call_matlab <-- >> 2009-02-04 19:34:34,542 DEBUG call_matlab --> close all 2009-02-04 19:34:34,604 DEBUG call_matlab <-- >> 2009-02-04 19:34:34,604 DEBUG call_matlab --> cd /home/data/km0903/proc/wh300/nav 2009-02-04 19:34:34,606 DEBUG call_matlab <-- >> 2009-02-04 19:34:34,607 DEBUG call_matlab --> callrtmp_tmp 2009-02-04 19:34:36,634 DEBUG call_matlab <-- cruise = km0903 cruise = km0903 cruise = km0903 cruise = km0903 >> 2009-02-04 19:34:36,634 DEBUG quick_run ------------ step 13: automatically find profile flags ------------- 2009-02-04 19:34:36,634 DEBUG quick_run find profile flags ------------ *** ------------- 2009-02-04 19:34:36,634 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:36,635 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/edit 2009-02-04 19:34:36,635 DEBUG quick_setup running python command "method" 2009-02-04 19:34:38,114 DEBUG quick_run ------------ step 14: apply all profile flags to database ------------- 2009-02-04 19:34:38,114 DEBUG quick_run starting in: /home/data/km0903/proc/wh300 2009-02-04 19:34:38,115 DEBUG quick_run executing commands from: edit 2009-02-04 19:34:38,118 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/dbupdate ../adcpdb/a_km abadprf_tmp.asc 2009-02-04 19:34:38,123 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/badbin ../adcpdb/a_km abadbin_tmp.asc 2009-02-04 19:34:38,131 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/set_lgb ../adcpdb/a_km 2009-02-04 19:34:38,136 DEBUG quick_run about to run /home/currents/programs/codas3/bin/lnx/setflags setflags.tmp 2009-02-04 19:34:38,185 DEBUG quick_run changing directories back to /home/data/km0903/proc/wh300 2009-02-04 19:34:38,185 DEBUG quick_adcp ------------ step 15: rerun nav steps, redo reflayer plots ------------- 2009-02-04 19:34:38,186 DEBUG quick_run ------------ step 8: run adcpsect (for calib) ------------- 2009-02-04 19:34:38,186 DEBUG quick_setup nav/as_nav.tmp exists 2009-02-04 19:34:38,186 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:38,186 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/nav 2009-02-04 19:34:38,187 DEBUG quick_setup running python command "method" 2009-02-04 19:34:38,187 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/01/30 18:05:32 to 2009/02/04 19:32:28 /* the whole time range */ 2009-02-04 19:34:38,187 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-02-04 19:34:38,292 DEBUG quick_run ------------ step 9: run refabs (for calib) ------------- 2009-02-04 19:34:38,293 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:38,293 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/nav 2009-02-04 19:34:38,293 DEBUG quick_setup running python command "method" 2009-02-04 19:34:38,293 DEBUG quick_subs fix_file_type: simple reference_file: a_km.nav fix_file: a_km.gps output: a_km.ref year_base= 2009 ensemble_length= 120 gap_tolerance= 10 2009-02-04 19:34:38,294 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabs refabs.tmp 2009-02-04 19:34:38,364 DEBUG quick_run ------------ step 10: get smoothed navigation (for calib) ------------- 2009-02-04 19:34:38,364 DEBUG quick_setup nav/smoothr.tmp exists 2009-02-04 19:34:38,364 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:38,364 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/nav 2009-02-04 19:34:38,365 DEBUG quick_setup running python command "method" 2009-02-04 19:34:38,365 DEBUG quick_subs reference_file: a_km.nav refabs_output: a_km.ref output: a_km.sm filter_hwidth= 0.0208 min_filter_fraction= 0.5 max_gap_ratio= 0.05 max_gap_distance= 50 max_gap_time= 30 /* 0.5 minutes */ ensemble_time= 120 max_speed= 5.0 min_speed= 1.0 iterations= 5 fix_to_dr_limit= 0.00050 2009-02-04 19:34:38,365 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/smoothr smoothr.tmp 2009-02-04 19:34:38,730 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:39,154 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/nav 2009-02-04 19:34:39,155 DEBUG quick_setup running python command "method" 2009-02-04 19:34:39,155 DEBUG call_matlab --> clear all 2009-02-04 19:34:39,168 DEBUG call_matlab <-- >> 2009-02-04 19:34:39,168 DEBUG call_matlab --> close all 2009-02-04 19:34:39,232 DEBUG call_matlab <-- >> 2009-02-04 19:34:39,232 DEBUG call_matlab --> cd /home/data/km0903/proc/wh300/nav 2009-02-04 19:34:39,235 DEBUG call_matlab <-- >> 2009-02-04 19:34:39,235 DEBUG call_matlab --> refsm 2009-02-04 19:34:41,812 DEBUG call_matlab <-- Starting getmat ... Filename prefix is: refsm_ INFO: database ../adcpdb/a_km opened Searching CODAS database ==> ../adcpdb/a_km for block 0 profile 0 Max no. of profiles ==> 100001 Max no. of bins ==> 20 % WARNING: Reached end of database Retrieved 3639 profiles, 20 bins INFO: database closed loading getmat output 10 percent done... 20 percent done... 30 percent done... 40 percent done... 50 percent done... 60 percent done... 70 percent done... 80 percent done... 90 percent done... 100 percent done... >> 2009-02-04 19:34:41,812 DEBUG quick_run ------------ step 11: put smoothed navigation back into database ------------- 2009-02-04 19:34:41,813 DEBUG quick_setup nav/putnav.tmp exists 2009-02-04 19:34:41,813 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:41,813 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/nav 2009-02-04 19:34:41,813 DEBUG quick_setup running python command "method" 2009-02-04 19:34:41,814 DEBUG quick_subs dbname: ../adcpdb/a_km position_file: refsm.sm year_base= 2009 tolerance= 5 navigation_sources: gps end 2009-02-04 19:34:41,814 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/putnav putnav.tmp 2009-02-04 19:34:41,927 DEBUG quick_run ------------ step 12: plot reference layer ------------- 2009-02-04 19:34:41,928 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:41,928 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/nav 2009-02-04 19:34:41,928 DEBUG quick_setup running python command "method" 2009-02-04 19:34:41,930 DEBUG quick_subs Created callrtmp.m 2009-02-04 19:34:41,931 DEBUG call_matlab --> clear all 2009-02-04 19:34:41,938 DEBUG call_matlab <-- >> 2009-02-04 19:34:41,938 DEBUG call_matlab --> close all 2009-02-04 19:34:41,998 DEBUG call_matlab <-- >> 2009-02-04 19:34:41,998 DEBUG call_matlab --> cd /home/data/km0903/proc/wh300/nav 2009-02-04 19:34:42,003 DEBUG call_matlab <-- >> 2009-02-04 19:34:42,003 DEBUG call_matlab --> callrtmp_tmp 2009-02-04 19:34:43,663 DEBUG call_matlab <-- cruise = km0903 cruise = km0903 cruise = km0903 cruise = km0903 >> 2009-02-04 19:34:43,663 DEBUG quick_run ------------ step 16: list temperature and plot it ------------- 2009-02-04 19:34:43,663 DEBUG quick_setup edit/lst_temp.tmp exists 2009-02-04 19:34:43,663 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:43,663 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/edit 2009-02-04 19:34:43,664 DEBUG quick_setup running python command "method" 2009-02-04 19:34:43,664 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km.tem step_size= 1 year_base= 2009 time_ranges: all 2009-02-04 19:34:43,664 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_temp lst_temp.tmp 2009-02-04 19:34:43,711 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:43,712 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/edit 2009-02-04 19:34:43,712 DEBUG quick_setup running python command "method" 2009-02-04 19:34:44,697 DEBUG quick_run ------------ step 17: bottom track and watertrack calibrations ------------- 2009-02-04 19:34:44,697 DEBUG quick_setup cal/botmtrk/lst_btrk.tmp exists 2009-02-04 19:34:44,698 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:44,698 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/cal/botmtrk 2009-02-04 19:34:44,698 DEBUG quick_setup running python command "method" 2009-02-04 19:34:44,698 DEBUG quick_subs dbname: ../../adcpdb/a_km output: a_km.btm step_size= 1 year_base= 2009 time_ranges: 2009/01/30 18:05:32 to 2009/02/04 19:32:28 /* whole time range */ 2009-02-04 19:34:44,699 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/lst_btrk lst_btrk.tmp 2009-02-04 19:34:44,713 DEBUG quick_setup cal/botmtrk/refabsbt.tmp exists 2009-02-04 19:34:44,714 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:44,714 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/cal/botmtrk 2009-02-04 19:34:44,714 DEBUG quick_setup running python command "method" 2009-02-04 19:34:44,714 DEBUG quick_subs fix_file_type: simple reference_file: a_km.btm fix_file: ../../nav/a_km.gps output: a_km.ref year_base= 2009 ensemble_length= 120 gap_tolerance= 60 2009-02-04 19:34:44,714 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/refabsbt refabsbt.tmp 2009-02-04 19:34:44,719 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:44,720 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/cal/botmtrk 2009-02-04 19:34:44,720 DEBUG quick_setup running python command "method" 2009-02-04 19:34:44,720 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') [a, ph, gd_mask, d] = ... btcaluv('a_km.ref','a_km.btm',... 'ADCP km0903 step size 1 ', 1); 2009-02-04 19:34:44,896 DEBUG quick_setup nav/as_nav.tmp exists 2009-02-04 19:34:44,896 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:44,896 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/nav 2009-02-04 19:34:44,896 DEBUG quick_setup running python command "method" 2009-02-04 19:34:44,897 DEBUG quick_subs dbname: ../adcpdb/a_km output: a_km step_size: 1 ndepth: 20 time_ranges: separate year_base= 2009 option_list: pg_min= 50 navigation: reference_bins 2 to 20 end statistics: mean units= 0.01 /* cm/s instead of default m/s */ end flag_mask: ALL_BITS end end 2009/01/30 18:05:32 to 2009/02/04 19:32:28 /* the whole time range */ 2009-02-04 19:34:44,897 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_nav.tmp 2009-02-04 19:34:45,000 DEBUG quick_setup cal/watertrk/timslip.tmp exists 2009-02-04 19:34:45,001 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:45,001 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/cal/watertrk 2009-02-04 19:34:45,001 DEBUG quick_setup running python command "method" 2009-02-04 19:34:45,001 DEBUG quick_subs fix_file_type: simple fix_file: ../../nav/a_km.gps reference_file: ../../nav/a_km.nav output_file: a_km_7.cal year_base= 2009 min_n_fixes= 7 /* 5 7 9 */ n_refs= 7 /* 5 7 9 */ i_ref_l0= 1 i_ref_l1= 2 /* 1 2 3 */ i_ref_r0= 5 /* 4 5 6 */ i_ref_r1= 6 /* 4 6 8 */ up_thresh= 3.0 /* m/s */ down_thresh= 3.0 /* m/s */ turn_speed= 2.0 /* m/s */ turn_thresh= 60 /* degrees */ dtmax= 360 /* seconds, for 300-second ensembles */ tolerance= 5.e-5 /* days, about 5 seconds */ grid: ensemble use_shifted_times? no 2009-02-04 19:34:45,002 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timslip timslip.tmp 2009-02-04 19:34:45,033 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:45,034 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/cal/watertrk 2009-02-04 19:34:45,034 DEBUG quick_setup running python command "method" 2009-02-04 19:34:45,034 DEBUG quick_subs about to run %% no diary written %% set(0,'defaultfigureposition',[0 0 300 400]) set(0,'defaultfiguremenubar','none') set(0,'defaultfiguretoolbar','none') adcpcal('a_km_7.cal', 'ADCP km0903 7ens') 2009-02-04 19:34:45,034 DEBUG call_matlab --> clear all 2009-02-04 19:34:45,040 DEBUG call_matlab <-- >> 2009-02-04 19:34:45,040 DEBUG call_matlab --> close all 2009-02-04 19:34:45,101 DEBUG call_matlab <-- >> 2009-02-04 19:34:45,101 DEBUG call_matlab --> cd /home/data/km0903/proc/wh300/cal/watertrk 2009-02-04 19:34:45,104 DEBUG call_matlab <-- >> 2009-02-04 19:34:45,104 DEBUG call_matlab --> calladcpcal_tmp 2009-02-04 19:34:46,781 DEBUG call_matlab <-- figure saved as cal1.ps figure saved as cal2.ps ans = 40 ans = j_ph: 11 j_amp: 10 j_t: 2 j_du: 5 j_dv: 6 j_dt: 9 j_mvar: 8 j_var: 7 calr: [41x11 double] igood: [39x1 double] >> 2009-02-04 19:34:46,782 DEBUG quick_asect ------------ step 18: make matlab files for plotting ------------- 2009-02-04 19:34:46,782 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:46,782 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/vector 2009-02-04 19:34:46,782 DEBUG quick_setup running python command "method" 2009-02-04 19:34:46,783 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_km.tmp 2009-02-04 19:34:46,788 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:46,788 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/vector 2009-02-04 19:34:46,788 DEBUG quick_setup running python command "method" 2009-02-04 19:34:46,789 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_vect.tmp 2009-02-04 19:34:46,875 DEBUG quick_asect done making vector matfiles 2009-02-04 19:34:46,876 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:46,876 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/contour 2009-02-04 19:34:46,876 DEBUG quick_setup running python command "method" 2009-02-04 19:34:46,876 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/timegrid a_km.tmp 2009-02-04 19:34:46,883 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:46,883 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/contour 2009-02-04 19:34:46,883 DEBUG quick_setup running python command "method" 2009-02-04 19:34:46,884 DEBUG quick_setup about to run /home/currents/programs/codas3/bin/lnx/adcpsect as_cont.tmp 2009-02-04 19:34:46,999 DEBUG quick_setup starting in /home/data/km0903/proc/wh300 2009-02-04 19:34:46,999 DEBUG quick_setup executing commands from /home/data/km0903/proc/wh300/contour 2009-02-04 19:34:46,999 DEBUG quick_setup about to run getmat -qrs -f allbins_ ../adcpdb/a_km 2009-02-04 19:34:47,281 DEBUG quick_asect done running getmat with "allbins" 2009-02-04 19:34:47,282 INFO root copying NOFIG to /home/adcp/www/figures/wh300_hcorr_plot.png 2009-02-04 19:34:47,282 INFO root copying NOFIG to /home/adcp/www/figures/thumbnails/wh300_hcorr_plot_thumb.png 2009-02-04 19:34:47,282 DEBUG root matfile is contour/contour_uv.mat 2009-02-04 19:34:47,284 INFO root copying contour/contour_uv.mat to /home/adcp/www/data/wh300_cont_uv.mat 2009-02-04 19:34:47,284 DEBUG root matfile is vector/vector_uv.mat 2009-02-04 19:34:47,285 INFO root copying vector/vector_uv.mat to /home/adcp/www/data/wh300_vect_uv.mat 2009-02-04 19:34:47,285 DEBUG root matfile is contour/contour_xy.mat 2009-02-04 19:34:47,286 INFO root copying contour/contour_xy.mat to /home/adcp/www/data/wh300_cont_xy.mat 2009-02-04 19:34:47,286 DEBUG root matfile is vector/vector_xy.mat 2009-02-04 19:34:47,286 INFO root copying vector/vector_xy.mat to /home/adcp/www/data/wh300_vect_xy.mat 2009-02-04 19:34:47,286 DEBUG root about to copy file edit/a_km.tem to /home/adcp/www/data/wh300_temp.asc 2009-02-04 19:34:47,287 INFO root copying edit/a_km.tem to /home/adcp/www/data/wh300_temp.asc 2009-02-04 19:34:47,288 INFO root Ending quick_adcp.py 2009-02-04 19:34:47,392 DEBUG quick_setup killed matlab engine